BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479237 Length=655 Score E Sequences producing significant alignments: (Bits) Value AT3G17609.2 | Symbols: HYH | HY5-homolog | chr3:6023866-6024698... 977 0.0 > AT3G17609.2 | Symbols: HYH | HY5-homolog | chr3:6023866-6024698 FORWARD LENGTH=668 Length=668 Score = 977 bits (529), Expect = 0.0 Identities = 615/656 (94%), Gaps = 7/656 (1%) Strand=Plus/Plus Query 1 GCAATATCCTTTGGTTTAATATTCTCTTGAACCTCTTACCTCTCTACTCTGGTCTTTACC 60 ||||| ||||||||||| |||||||||| ||||||||||||||||| ||| ||||||| | Sbjct 19 GCAATTTCCTTTGGTTTGATATTCTCTTCAACCTCTTACCTCTCTATTCTCGTCTTTAGC 78 Query 61 AAAATCTCAAAAGACAAAAAGATATTGATGTCTCTTCAACGACCCAATGGGCACTCGAGT 120 ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 79 AAAATCTCAAAAGACAAAAAGATATTGATGTCTCTCCAACGACCCAATGGGAACTCGAGT 138 Query 121 TCGTCTTCTTCCCACATGAAGCACAAAACTGAGGAAAGTGATGAGGAGTTGTTGATGGTT 180 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 139 TCGTCTTCTTCCCACAAGAAGCACAAAACTGAGGAAAGTGATGAGGAGTTGTTGATGGTT 198 Query 181 CCTAACATGGAAGCAGCTGGATCAACATGTGTTCTAAGCAGCAGCGCCGATGATGGAGTC 240 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 199 CCTGACATGGAAGCAGCTGGATCAACATGTGTTCTAAGCAGCAGCGCCGACGATGGAGTC 258 Query 241 AATAATCCGGAGCTTGACCCGACTCAAAATGAAGTCTCTACCGCTAAACGCCGCCGTGGT 300 || |||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| Sbjct 259 AACAATCCGGAGCTTGACCAGACTCAAAATGGAGTCTCTACAGCTAAACGCCGCCGTGGA 318 Query 301 CGAAACCCAGTTGATAAAGAGTATAGAAGCCTCAAGAGATTGTTGAGGAACAGAGTATCA 360 ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 319 AGAAACCCTGTTGATAAAGAATATAGAAGCCTCAAGAGATTATTGAGGAACAGAGTATCA 378 Query 361 GCACAACAAGCGAGAGAGAGGAAGAAAGTGTATGTGAGTGATTTGGAATCAAGAGCTAAT 420 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 GCGCAACAAGCAAGAGAGAGGAAGAAAGTGTATGTGAGTGATTTGGAATCAAGAGCTAAT 438 Query 421 GAGTTACAGAACAACAATGATCAACTTGAAGAGAAGATATCGACTTTGACGAACGAGAAC 480 |||||||||||||||||||| || || ||||||||||| || |||||||||||||||||| Sbjct 439 GAGTTACAGAACAACAATGACCAGCTCGAAGAGAAGATTTCTACTTTGACGAACGAGAAC 498 Query 481 ACAATGCTTCGTAAAATGCTTATTAACACAAGGCCTAAAGCTGATGACAATCACTAAATA 540 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 499 ACAATGCTTCGTAAAATGCTTATTAACACAAGGCCTAAAACTGATGACAATCACTAAATA 558 Query 541 TTTACCCTTGAATCCATTGTTCAGTGTTGTATAATTATCTTA-TTTAtttttttGGTTTC 599 ||||||||| |||||||||||||||||||||| |||||||| ||| |||||| ||||| Sbjct 559 TTTACCCTTTAATCCATTGTTCAGTGTTGTATGATTATCTTTCTTTCTTTTTT-GGTTTT 617 Query 600 GGTTTGTATACAATTTTTGTTCGAATAACAATCAGTTCACTTTGAGCATCATTGTC 655 |||||||||||| ||||||||||||||||| | | ||||||||||||||||||| Sbjct 618 GGTTTGTATACACTTTTTGTTCGAATAACA-T---T-CACTTTGAGCATCATTGTC 668 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31647512610 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5