BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479265 Length=1688 Score E Sequences producing significant alignments: (Bits) Value AT3G17810.1 | Symbols: PYD1 | pyrimidine 1 | chr3:6094098-60965... 2477 0.0 > AT3G17810.1 | Symbols: PYD1 | pyrimidine 1 | chr3:6094098-6096566 FORWARD LENGTH=1739 Length=1739 Score = 2477 bits (1341), Expect = 0.0 Identities = 1596/1715 (93%), Gaps = 33/1715 (2%) Strand=Plus/Plus Query 1 TTAAGTTGTTTACTTTGTTCTTCGATTTGATCACCAACTCTCACATATCTCGATATCCAA 60 ||||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 22 TTAAGTTCTTTCCTTTGTTCTTCGATTTGATCACCAACTCTCACATATTTCGAAATCGTC 81 Query 61 ACACTTTGTTGCGTGTTATCTTCTCCctctc-t-ctctctT-A---T-A-ATC-CTTGAG 111 |||||||||||||||| ||||||| ||||| | | |||| | | | || | || Sbjct 82 ACACTTTGTTGCGTGTCGTCTTCTCTCTCTCATAAT-TCTTGAGTTTCACGTCTCAAGAT 140 Query 112 TT--TCACGTCT--CAA---GCCAGATTGATCTCTGTAATCATGGCTTCCATGAGTTTCG 164 || |||| ||| ||| |||||||||||||| |||| ||||||||||||||||||| Sbjct 141 TTGATCACTTCTGCCAATTTTCCAGATTGATCTCTCTAATTATGGCTTCCATGAGTTTCG 200 Query 165 CCTTGAATCGCTTCTCTGGACTCTCCTCTAAAACCACCTTATCAGCTGACTTCGATCCAT 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 CCTTGAATCGCTTCTCTGGACTCTCCTCTAAAACCACCTTATCAGCTGACTTCGATCCAT 260 Query 225 CAACTCGCCGGAGTTTTCTACCGCCGACTAGAGTTGGACTTAAGATCTCTTCCGCCGCCG 284 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 261 CCTCTCGCCGGAGTTTTCTACCGCCGACTAGAGTTGGACTTAAGATCTCTTCCGCCGCCG 320 Query 285 AATCGGAGCCTGATCTCAGTGTCACTGTAAATGGCCTGAAAATGCCTAATCCTTTCGTGA 344 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 321 AATCGGAGCCTGATCTCAGTGTCACTGTAAATGGCCTGAAAATGCCCAATCCTTTCGTGA 380 Query 345 TCGGGTCGGGTCCACCGGGTACCAACTACACCGTCATGAAGAGAGCCTTTGACGAAGGTT 404 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 381 TCGGGTCGGGTCCACCGGGTACCAACTACACCGTCATGAAGAGAGCCTTTGATGAAGGTT 440 Query 405 GGGGAGCCGTCATCGCCAAAACCGTATCATTAGATGCAGCCAAAGTTATCAACGTGACAC 464 |||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 441 GGGGGGCCGTCATCGCCAAAACCGTATCTTTAGATGCATCCAAAGTTATCAACGTGACAC 500 Query 465 CTCGATATGCTCGGCTACGAACTGGTTCCAGTGGCTCAGCCAAAACAGATGTAATTGGGT 524 || ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||| Sbjct 501 CTAGATATGCTCGGCTACGAACCGGATCCAATGGCTCAGCCAAAACAGATGTAATTGGGT 560 Query 525 GGCAGAACATAGAACTCATCAGTGACCGACCTCTTGAAACCATGCTCAGAGAGTTTGAGC 584 |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 561 GGCAGAACATAGAACTCATCAGTGACAGACCTCTTGAAACCATGCTCAAAGAGTTTGAGC 620 Query 585 GATTGAAAAAAGAGTATCCTGATCGGATTTTGATTGCTTCCA-TCATGGAGGAATACAAC 643 | ||||||||||||||||||||||||||| |||||||||| | ||||||||||||| ||| Sbjct 621 GGTTGAAAAAAGAGTATCCTGATCGGATTCTGATTGCTTC-AGTCATGGAGGAATATAAC 679 Query 644 AAAACTGCTTGGGAAGAGCTTATCGACCGTGTTGAGCAAACTGGTGTTGATGCTTTAGAA 703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 680 AAAACTGCTTGGGAAGAGCTTATCGACCGTGTTGAGCAAACTGGTGTTGATGCTTTAGAA 739 Query 704 ATCAACTTCTCGTGTCCTCACGGTATGCCAGAGCGCAGAATGGGTGCCGCTGTTGGACAA 763 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 740 ATCAACTTCTCGTGTCCTCATGGTATGCCAGAGCGCAGAATGGGTGCCGCTGTTGGACAA 799 Query 764 GATTGTGCGCTTCTCGACGAGGTTTGCGGATGGATTAATGCTAAAGCTACAGTTCCTGTT 823 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 800 GATTGTGCGCTTCTCGACGAGGTTTGCGGATGGATTAATGCTAAAGCTACAGTTCCTGTA 859 Query 824 TGGGCTAAGATGACTCCTAATATCACTGACATAACAGAGCCTGCAAGGGTATCTCTAAAA 883 ||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |||||| Sbjct 860 TGGGCTAAGATGACTCCTAATATTACTGACATAACTGAGCCTGCTAGGGTGTCACTAAAA 919 Query 884 TCAGGATGTGAAGGAATTTCAGCTATCAATACAATCATGAGTGTTATGGGAATTGATATG 943 || ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| Sbjct 920 TCCGGATGTGAAGGAATTGCAGCGATCAATACAATCATGAGTGTAATGGGAATTGATATG 979 Query 944 AAGACGCTGCGTCCTGAGCCATGCGTTGAAGGTTATTCAACTCCAGGAGGCTACTCTTAT 1003 |||||| |||||||||||||||||||||||||||| || |||||||| || ||||||||| Sbjct 980 AAGACGTTGCGTCCTGAGCCATGCGTTGAAGGTTACTCCACTCCAGGGGGATACTCTTAT 1039 Query 1004 AAGGCCGTTCGCCCCATTGCGCTTGCGAAAGTTATGAACATTGCCAAAATGATGAAATCT 1063 |||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||| Sbjct 1040 AAGGCCGTTCGCCCAATTGCACTGGCAAAAGTTATGAACATTGCCAAAATGATGAAATCT 1099 Query 1064 GAGTTCAGTGAAAATCACTCGCTTTCGGGTATCGGAGGTGTTGAAACTGGCTATGATGCC 1123 ||||| ||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1100 GAGTTTAGTGAGGATCGCTCGCTTTCGGGTATTGGAGGAGTTGAAACTGGCTATGATGCC 1159 Query 1124 GCTGAGTTCATTCTCCTTGGATCAAATACTGTACAGGTATGCACCGGTGTGATGATGCAC 1183 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1160 GCTGAATTCATTCTCCTTGGATCAAATACTGTACAGGTATGCACCGGTGTGATGATGCAC 1219 Query 1184 GGCTATGGTCATGTGAAAACCCTTTGCGCCGAGCTTCAAGATTTCATGAAACAACACAAC 1243 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1220 GGCTATGGTCATGTGAAAACCCTTTGCGCTGAGCTGAAAGATTTCATGAAACAACACAAC 1279 Query 1244 TTCTCGACGATAGAAGAGTTCAGAGGGCATTCGCTGCAGTACTTTACGACACACACAGAT 1303 ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1280 TTCTCTACAATAGAAGAGTTCAGAGGGCATTCGCTGCAGTACTTTACAACACACACAGAT 1339 Query 1304 TTAGTTAAGAGACAGAAAGAAGCAGTTGAGCAGCGAAAAGCTGAGAAGAGAGGCTTGAAA 1363 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1340 TTAGTTAAGAGACAGAAAGAAGCAGTTGAGCAGAGAAAAGCTGAGAAGAGAGGCTTGAAA 1399 Query 1364 TCTGACAAAGATTGGACCGGAGATGGGTTCGTGAAGGAGACTGAAAGTATGGTTTCTAAC 1423 ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1400 TCTGATAAAGATTGGACCGGGGATGGGTTCGTGAAGGAGACTGAGAGTATGGTTTCTAAC 1459 Query 1424 TAAGTTAGTAGCCTGTTGAAGTAGTGATGACCACCCAAATATTT-AATAAAGGTTCTGCA 1482 ||||||||||||||| |||||| | |||||||||||||||||| ||||||||||| ||| Sbjct 1460 TAAGTTAGTAGCCTGATGAAGT--T-ATGACCACCCAAATATTTCAATAAAGGTTCAGCA 1516 Query 1483 GCTTCATTCACAA-TCAAAT-CAC-T-A--A-GGCTCTTTCTTTCAAATGTTTCAAATCG 1535 |||||||||||| ||| || || | | | ||||||||||||||||||||| ||||| Sbjct 1517 ACTTCATTCACAACTCACATGCAAATTACGAAGGCTCTTTCTTTCAAATGTTTAAAATCA 1576 Query 1536 ACTTCGTTAA-TCTCACTTGAAAGGAAATAACTAAATTT-ATGTATCTTAATTTTCTTCT 1593 ||||| |||| |||||||||||| ||||||||||||||| |||| ||||||||||||||| Sbjct 1577 ACTTC-TTAAATCTCACTTGAAAAGAAATAACTAAATTTTATGTTTCTTAATTTTCTTCT 1635 Query 1594 CCTTGTGTACTATTCATCTTGTATCCATCCATAGCAACCATTTCTTTGTTCCTTCAAGTT 1653 | ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1636 CGTTGTGTATTATTCATCTTGTATCCATCCATAGCAACCATTTCTTTGTTACTTCAAGTT 1695 Query 1654 GGCTTAATTTTTGGCCAATAATAATATCATAGACC 1688 ||||||| |||||||||||||||||| |||||||| Sbjct 1696 GGCTTAAATTTTGGCCAATAATAATACCATAGACC 1730 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83433305790 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5