BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479304
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18140.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1831 0.0
AT2G22040.1 | Symbols: | Transducin/WD40 repeat-like superfami... 953 0.0
> AT3G18140.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:6212596-6214785 REVERSE LENGTH=1283
Length=1283
Score = 1831 bits (991), Expect = 0.0
Identities = 1131/1199 (94%), Gaps = 7/1199 (1%)
Strand=Plus/Plus
Query 1 TTTTTGATCCTCAATCAGGAAACCCTAGCTTGTTCTTCTGTTGATTATTTCGAAAAAGGG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 80 TTTTTGATCCTCAATCACCAAACCCTAGCTTGTTCTTCTGTTGATTATTTCGAAAAGGGG 139
Query 61 GTTTGTTTGGTTTCTGGGAATCAGCAAAAATCACGAAATGGTTGGTTCATTATTTCGATC 120
||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct 140 GTTTGTTTGTTTTCTGGGAATCAGCAAAAATCACGAAATGGTTGGTTTAATATTTCAATC 199
Query 121 GGGATAAAATCGATCGAAAATGAGTCAGCCTTCTGTGATTCTTGCTACAGCTAGCTATGA 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 200 GGGATAAAATCGATCGAAAATGAGTCAGCCTTCTGTGATTCTTGCTACGGCTAGCTATGA 259
Query 181 TCACACGATTCGATTCTGGGAAGCCGAAACTGGTCGCTGTTACCGTACCATTCAGTATCC 240
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TCACACCATCCGATTCTGGGAAGCCGAAACTGGTCGCTGTTACCGTACCATTCAGTATCC 319
Query 241 TGATTCGCATGTAAATAGGCTTGAGATAACCCCAGATAAGCGTTATCTAGCTGCAGCTTG 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 320 TGATTCGCATGTAAATAGGCTTGAGATAACCCCAGATAAGCATTATCTAGCTGCAGCTTG 379
Query 301 TAATCCTCATATACGGCTTTTTGATGTCAATTCCAACAGTCCTCAACCTGTGATGACTTA 360
||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 380 CAATCCTCATATTCGACTCTTTGATGTCAATTCCAATAGTCCTCAACCTGTGATGACTTA 439
Query 361 TGATTCACACACCAACAATGTTATGGCAGTAGGATTCCAATGTGATGGGAAATGGATGTA 420
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 440 CGATTCACACACCAACAATGTTATGGCAGTAGGATTTCAATGTGATGCAAAATGGATGTA 499
Query 421 TTCAGGATCAGAGGATGGCACAGTTAAGATCTGGGACTTGAGGGCTCCCGGTTGCCAAAA 480
|||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 500 TTCAGGATCAGAAGATGGCACAGTTAAGATCTGGGACTTAAGGGCTCCGGGTTGCCAAAA 559
Query 481 GGAGTATGAAAGTGTTGCCGCAGTTAACACTGTTGTTTTACACCCAAATCAGACTGAATT 540
|||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct 560 GGAGTATGAAAGTGTTGCAGCGGTTAATACAGTTGTTTTACACCCAAATCAGACTGAATT 619
Query 541 GATATCTGGAGACCAAAATGGAAATATACGTGTATGGGATCTCAGAGCAAATTCGTGTAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 GATATCTGGAGACCAAAATGGAAATATACGTGTATGGGATCTCAGAGCAAATTCGTGTAG 679
Query 601 TTGTGAACTGGTACCAGAAGTTGATACAGCTGTACGGTCTTTGACGGTTATGTGGGATGG 660
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 680 CTGTGAACTGGTACCAGAAGTTGATACAGCTGTACGGTCTTTAACTGTTATGTGGGATGG 739
Query 661 TACAATGGTGGTTGCTGCTAACAACCGTGGAACATGTTATGTGTGGCGCTTGTTGCGTGG 720
|||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 740 GACAATGGTAGTCGCTGCTAACAACCGTGGAACATGTTATGTATGGCGCTTGTTGCGTGG 799
Query 721 AAAACAGACGATGACCGAGTTTGAACCCCTTCATAAGCTGCAAGCTCATAATGGCCACAT 780
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 800 AAAACAGACAATGACAGAGTTTGAGCCCCTTCATAAGCTGCAAGCTCATAATGGCCACAT 859
Query 781 CCTTAAATGCCTTCTCTCTCCTGCAAACAAGTATCTAGCAACCGTATCGTCTGATAAAAC 840
||||||||| || ||||||||||||||||| |||||||| || | ||| |||||||||||
Sbjct 860 CCTTAAATGTCTCCTCTCTCCTGCAAACAAATATCTAGCGACTGCATCATCTGATAAAAC 919
Query 841 CGTCAAAATATGGAACGTCGATGGTTTCAAACTAGAGAAAGTTTTAACAGGACATCAAAG 900
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 920 TGTCAAAATATGGAACGTCGATGGTTTTAAACTAGAGAAAGTTTTAACAGGACATCAAAG 979
Query 901 ATGGGTCTGGGACTGCGTCTTCTCAGTGGATGGAGAATTTCTTGTTACCGCATCATCTGA 960
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 980 ATGGGTTTGGGACTGCGTCTTCTCAGTGGATGGAGAATTTCTTGTAACAGCATCATCGGA 1039
Query 961 CATGACGGCTAGATTGTGGTCGATGCCAGCGGGTAAAGAAGTGAAGGTATACCAAGGTCA 1020
|||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||
Sbjct 1040 CATGACGGCTAGATTGTGGTCGATGCCAGCAGGCAAAGAAGTGAAAGTGTACCAAGGTCA 1099
Query 1021 TCACAAAGCCACTGTGTGCTGTGCACTCCACGATTAAAACCTTT-TAAGAATTAATGAAG 1079
||||||||||||||||||||||||||| ||||||||||||||| ||||||| || | |
Sbjct 1100 TCACAAAGCCACTGTGTGCTGTGCACTTCACGATTAAAACCTTAATAAGAATCAA--A-G 1156
Query 1080 CTAAATTATGGACAAACTACGATTGTGTTATTTGTGTTTTAGAAAACTCTTGTACATTTT 1139
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1157 CTAAATTATGAACAAACTACGATTGTGTTATTTGTGTTTTAGTAAACTCTTGTACATTTC 1216
Query 1140 AATCGAATTCGTTCAAATTGCTCTTTATGTCTCC-TCTGTGATCAAACATTTCTCAACT 1197
||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||||
Sbjct 1217 AATCGAATTCGTTCAAATTGCTCTT-ATGT-TCCCTCTCTGATCAAACATTTCTCAACT 1273
> AT2G22040.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:9374438-9376260 REVERSE LENGTH=1080
Length=1080
Score = 953 bits (516), Expect = 0.0
Identities = 846/1000 (85%), Gaps = 43/1000 (4%)
Strand=Plus/Plus
Query 160 TCTTGCTACAGCTAGCTATGATCACACGATTCGATTCTGGGAAG-CCGAAACTGGTCGCT 218
||| || ||||| ||| ||||||| || || ||||| ||| ||| ||| ||| |||||||
Sbjct 36 TCTCGCAACAGCAAGCCATGATCAAACCATCCGATTATGGCAAGCCCG-AACCGGTCGCT 94
Query 219 GTTACCGTACCATTCAG-TATCCTGATTCGCATGTAAATAGGCTTGAGATAACCCCAGAT 277
||||| | || ||| | |||||||||| |||||| |||||||||||| ||||||| ||
Sbjct 95 GTTACTTTTCCTTTC-GCTATCCTGATTTGCATGTGAATAGGCTTGAGCTAACCCCTGAA 153
Query 278 AAGCGTTATCTAGCT-GCAGCTTGTAATCCTCATATACGGCTTTTTGATGTCA-ATTCCA 335
||| || | |||| | |||||||| |||||||| ||||| || |||||| ||| | |||
Sbjct 154 AAGGGTAAACTAG-TAGCAGCTTGCAATCCTCACATACGACTCTTTGATCTCAGA-TCCT 211
Query 336 ACAGTCCTC--A-ACCTGTGATGACTTATGAT-TCACACACCAACAATGTTATGGCAGTA 391
||| |||| | |||||||| || || || | ||||||||||| ||||||||||| |||
Sbjct 212 ACAACCCTCATATACCTGTGAGGAATTTTG-TATCACACACCAAAAATGTTATGGCGGTA 270
Query 392 GGATTCCAATGTGA-TGGGA-A-ATGGATGTATTCAGGATCAGAGGATGGCACAGTTAAG 448
|||||||||| | | | ||| | || |||||||||||| ||||| |||||| | ||||||
Sbjct 271 GGATTCCAATAT-ACT-GGACACAT-GATGTATTCAGGGTCAGAAGATGGCTCTGTTAAG 327
Query 449 ATCTGGGACTTGAGGGCTCCCGGTTGCCAAAAGGAGTATGA-AAGTGTTGC-CGCAGTTA 506
|||||||||||||||| || | ||||||| ||||| | | ||||||| | | ||||||
Sbjct 328 ATCTGGGACTTGAGGGTTCGAGAATGCCAAAGGGAGT-TTAGAAGTGTTTCAC-CAGTTA 385
Query 507 ACACTGTTGTTTTACACCCAAATCAGACTGAATTGATATCTGGAGACCAAAATGGAAATA 566
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 386 ACACAGTTGTTTTACACCCAAATCAGACTGAATTGATATCTGGAGACCAAAACGGTAATA 445
Query 567 TACGTGTATGGGATCTCAGAGCAAATTCGTGTAGTTGTGAACTGGTACCAGAAGTTGATA 626
||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| | ||
Sbjct 446 TACGTGTATGGGATCTCAGAGCAGATTTGTGTAGCTGTGAACTGGTACCAGAAGTCGGTA 505
Query 627 CAGCTGTACGGTCTTTGACGGTTATGTGGGATGGTACAATGGTGGTTGCTGCTAACAACC 686
|| || |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 506 CACCTATACGGTCTTTAACGGTTATGTGGGATGGGACAATGGTGGTTGCTGCTAACGACC 565
Query 687 GTGGAACATGTTATGTGTGGCGCTTGTTGCGTGGAAA-ACAGACGATGACCGAGTTTGAA 745
|||||||||||||||| ||||||| ||| ||| ||| ||| |||||||||||||||||
Sbjct 566 GTGGAACATGTTATGTATGGCGCTCCTTGTGTG-AAAGACAAACGATGACCGAGTTTGAG 624
Query 746 CCCCTTCATAAGCTGCAAGCTCATAATGGCCACATCCTTAAATGCCTTCTCTCTCCTGCA 805
|||||||||||||| |||||||||||| |||||||||||||||| || || ||||||| |
Sbjct 625 CCCCTTCATAAGCTACAAGCTCATAATAGCCACATCCTTAAATGTCTCCTTTCTCCTGGA 684
Query 806 AACAA--G-TATCTAGCAACCGTATCGTCTGATAAAACCGTCAAAATATGGAACGTCGAT 862
||||| | |||||||| |||| ||| ||||||||||| ||||||||||||||| | |||
Sbjct 685 AACAACAGATATCTAGCGACCGCATCATCTGATAAAACAGTCAAAATATGGAACCTTGAT 744
Query 863 GGTTTCAAACTAGAGAAAGTTTTAACAGGACATCAAAGATGGGTCTGGGACTGCGTCTTC 922
||||||||||| ||||||||||||||||| ||| |||||||||| |||||||| | ||||
Sbjct 745 GGTTTCAAACTTGAGAAAGTTTTAACAGGTCATGAAAGATGGGTATGGGACTGTGACTTC 804
Query 923 TCAGTGGATGGAGAATTTCTTGTTACCGCATCATCTGACATGACGGCTAGATTGTGGTCG 982
||| |||||||||||| |||||| || |||||||| |||| ||||||||||||||||||
Sbjct 805 TCAATGGATGGAGAATATCTTGTAACAGCATCATCGGACACCACGGCTAGATTGTGGTCG 864
Query 983 ATGCCAGCGGGTAAAGAAGTGAAGGTATACCAAGGTCATCACAAAGCCACTGTGTGCTGT 1042
|||| |||||| ||||||| || ||| ||||||| ||||| |||||| |||||||| |||
Sbjct 865 ATGCGAGCGGGAAAAGAAGAGATGGTGTACCAAGCTCATCGCAAAGCTACTGTGTGTTGT 924
Query 1043 GCACTCCA-CG--ATTAAAACCTTTTAAGAATTAATGAAGCTAAATTATGGACAAACTAC 1099
|||| | || |||||| ||| | || ||||| | || ||| ||| ||| ||
Sbjct 925 ACACTACTGCGTGATTAAATCCTGT-AA-AATTA-TCAA---AAA----GGATAAATTAT 974
Query 1100 GATTGTGTTATTTGTGTTTTAGA-AAACTCTTGTACATTT 1138
||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 975 GATTGTGTTGTTTGTGTTTTAGACAAA-TCTTGTACATTT 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5