BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479366 Length=1856 Score E Sequences producing significant alignments: (Bits) Value AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin lik... 1784 0.0 AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like... 198 1e-49 > AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2 | chr3:6404083-6407822 REVERSE LENGTH=2098 Length=2098 Score = 1784 bits (966), Expect = 0.0 Identities = 1255/1386 (91%), Gaps = 54/1386 (4%) Strand=Plus/Plus Query 502 GATGATTCTTCTTCAGACGAGGAATCTGCCCC--TGCGAAGAAGCAA-CC--C-GCAGCC 555 ||||| ||||||||||| |||||| | |||| || ||||||| || || | ||| Sbjct 715 GATGAATCTTCTTCAGATGAGGAAAC--CCCCGTTGTGAAGAAG-AAGCCAACAACAGTT 771 Query 556 CTTAAGAATACCAAAGCAGATAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGAGGAA 615 ||||| || |||| ||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 772 GTTAAGGATGCCAAGGCAGAAAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGATGAA 831 Query 616 CTC-ACACCTGCCATTAAGCCAACAGTTGTTAAGAATATC-AAACCAGCTGCAAAAGATT 673 | | |||||||||| ||||||||||||||||||||| | ||||||||||||||||||| Sbjct 832 C-CAACACCTGCCAAGAAGCCAACAGTTGTTAAGAAT-GCTAAACCAGCTGCAAAAGATT 889 Query 674 CATCATCCTCAGAGGAAGATTCTGATGAGGAGGAAAGTGATGATGAAAAACCTCCTACAA 733 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 890 CATCATCCTCAGAGGAAGATTCTGATGAGGAGGAAAGTGATGATGAAAAACCTCCTACGA 949 Query 734 AGAAGGCTAAAGTTTCATTAACAAAAACATCTAAAAAAGAAAGCTCTAGTGAGGAATCTA 793 |||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||| Sbjct 950 AGAAGGCTAAAGTTTCAT---CAAAAACTTCTAAACAAGAAAGCTCTAGTGATGAATCTA 1006 Query 794 GTGATGAATCTGATAAGGAGGAGAGTAAAGAAGAGAAAGTGACCCCAAAGAAAAAGGACT 853 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct 1007 GTGATGAATCTGATAAGGAGGAGAGTAAAGATGAGAAAGTGACACCAAAGAAAAAGGATT 1066 Query 854 CTGATATTGAAATGGTGGATGCAGAGCAGAAATCAAATGCAAAGCAGCCAAAGACACC-A 912 ||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| | Sbjct 1067 CTGATGTTGAAATGGTGGATGCAGAGCAGAAATCTAATGCAAAGCAGCCGAAGACACCTA 1126 Query 913 TCTACTGAGACTCAGGGAGGATCAAAGACGCTATTTGCTGGAAATCTTTCCTTTCAAATT 972 ||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1127 -CTAATCAGACTCAGGGAGGATCAAAGACGCTATTTGCTGGAAATCTTTCCTATCAAATT 1185 Query 973 GAGAGATCTGACATAGAGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTT 1032 | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 1186 GCGAGATCTGACATAGAGAATTTCTTCAAAGAAGCTGGTGAAGTTGTCGATGTTAGACTT 1245 Query 1033 TCTTCATATGATGATGGGACATTTAAGGGATATGGGCATGTTGAATTTGCTTCTCCAGAA 1092 ||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 1246 TCTTCATTTGATGATGGGAGTTTTAAGGGATATGGGCATATTGAATTTGCTTCTCCAGAA 1305 Query 1093 GAAGCTCAGAAGGCATTGGAACTGAACGGTAAAATGTTACTAGGGCGCGATGTTCGGCTT 1152 ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||| Sbjct 1306 GAAGCTCAGAAGGCATTGGAAATGAACGGTAAATTGTTACTAGGCCGCGATGTTCGTCTT 1365 Query 1153 GATCTTGCTAACGAGAGGGGT-CA--ACGAAACAGCAATTCTGGTCGCAAAGGAGAAGGA 1209 ||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| Sbjct 1366 GATCTTGCTAACGAGAGGGGTACTCCACGAAACAGCAATCCTGGTCGCAAAGGAGAAGGA 1425 Query 1210 AGCCAAAGTCGAACGATTTTTGTTAGAGGATTCAATTCTTCTCTTGGCGAAGATGAAATC 1269 ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1426 AGCCAAAGTCGAACGATTTACGTTAGAGGATTCAGTTCTTCTCTTGGCGAAGATGAAATC 1485 Query 1270 AAGAAAGAGTTGAGAAGTCTTTTTAGTAACTGCGGAGAGGTGACAAGGGTTCATGTTCCA 1329 ||||||||||||||||||| |||||| || || ||||||||||||||||||||||||||| Sbjct 1486 AAGAAAGAGTTGAGAAGTCATTTTAGCAAGTGTGGAGAGGTGACAAGGGTTCATGTTCCA 1545 Query 1330 ACAGATCGTGAGACTGGTGCTTGCAGGGGGTTGGCTTACATAGATTTGACGAATGGATTC 1389 |||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||| Sbjct 1546 ACAGATCGTGAGACTGGTGCTTCCAGGGGCTTTGCTTACATAGATTTGACGAGTGGATTC 1605 Query 1390 GATGAGGCGTTGCAACTGAGCGGAAGTGAAATTGGAGGATGGAACATACATGTGGAAGAG 1449 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1606 GATGAGGCGTTGCAACTGAGCGGAAGTGAAATTGGAGGAGGGAACATACATGTGGAAGAG 1665 Query 1450 TCTAGACCAAGAGATAGTGATGAGGGGCGTTCCTCAAACAGAGCACCTGGTAGAG---CA 1506 |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || Sbjct 1666 TCTAGACCAAGAGATAGTGATGAGGGCCGTTCCTCAAACAGAGCACCTGCTAGAGGAGCA 1725 Query 1507 CCTCGTGGACGTTACTCGGATAGAGGAGCACCTCGTGGC---CGTTTCTCAGATAGAGGA 1563 |||||||| ||| |||| ||||||| |||||||||| |||||||| ||||||| Sbjct 1726 CCTCGTGGCCGTCACTCAGATAGAG---CACCTCGTGGAGGACGTTTCTCGGATAGAG-- 1780 Query 1564 GCACCTCGTGGCCGTTTCTCGGATAGAGGAGCACCTCGTGGCCGTTTCAGTACGCGTGGA 1623 |||| ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1781 -CACCACGTGGACGTCACTCAGATAGAGGAGCACCTCGTGGCCGTTTCAGTACGCGTGGA 1839 Query 1624 AGAGGACCCAGCAAACCAAGTGTAATTGAATCAGCTCTA-GGGAAGAAGACGGTCTTTAA 1682 |||||||||||||||||||||||||| |||||| | | | |||| ||||||||||||||| Sbjct 1840 AGAGGACCCAGCAAACCAAGTGTAATGGAATCATC-CAAAGGGACGAAGACGGTCTTTAA 1898 Query 1683 AGATGAAGACTAGAAGAA-GCtttttttttttggttctatcttatagtag-----ctttt 1736 |||||||| |||||||| ||| ||||| |||||||||||||||||| | ||| Sbjct 1899 TGATGAAGAGTAGAAGAAAGCTGTTTTT----GGTTCTATCTTATAGTAGTAGAGCGTTT 1954 Query 1737 ttggcctagtttcttttgttttctATTGAGAAAAGCATTAAGCTTTATACTCTTCTCAAG 1796 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1955 TTGGCCTAGTTTCTTTTGTTTTCTGTTGAGAAAAGCATTAAGCTTTATACTCTTCTTAAG 2014 Query 1797 ATA-TTTTGTGTTGGtttttttCTTAAA-CTTA--A-GAGCACTTTACTTTGCTGCTCAA 1851 || |||| ||||||||||| |||||| |||| | ||||||||||||||||||||||| Sbjct 2015 ATTCTTTT-TGTTGGTTTTT--CTTAAAACTTATTAAGAGCACTTTACTTTGCTGCTCAA 2071 Query 1852 A-TTTT 1856 | |||| Sbjct 2072 AATTTT 2077 Score = 501 bits (271), Expect = 1e-140 Identities = 518/626 (83%), Gaps = 61/626 (10%) Strand=Plus/Plus Query 1 ATGGGCAAGTCTAGCAAAAAATCCGCCACCAAAGTTGAATCACCTGCTTCAATGACAAAG 60 |||||||||||||| || ||||||| |||| |||||||| |||||||||||||||||||| Sbjct 1 ATGGGCAAGTCTAGTAAGAAATCCGTCACCGAAGTTGAAACACCTGCTTCAATGACAAAG 60 Query 61 CCACTCAAGAAAGGTAAGAGAGATGCGGAACAGGATTTGGACATCCAAGTTCCGAAGAAG 120 |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| Sbjct 61 CCACTCAAGAAAGGTAAGAGAGATGCGGAAGAGGATTTGGACATGCAAGTTACGAAGAAG 120 Query 121 CAGAAGAAAGAGTTGATTGATGCTGTTCAGAAGGAGATATCTGAGAAAACCGTACCGAAG 180 |||||||||||||||||||||| |||||||||||||| | |||||||||| ||||| ||| Sbjct 121 CAGAAGAAAGAGTTGATTGATGTTGTTCAGAAGGAGAAAGCTGAGAAAACGGTACCTAAG 180 Query 181 AAGGTAGAGAGTAGCAGTTCTGACTCATCAGCTTCTTCTGATTCTGAGGATGATCAGAAG 240 |||||||||||||||||||||||| |||||| |||||||| ||| ||| | Sbjct 181 AAGGTAGAGAGTAGCAGTTCTGAC------GCTTCT---GATTCTGA---TGA--AGAGG 226 Query 241 ACTAAGAAAGTCCTTGCAAAGGAACCTCCTTCTAAGCAGAAGGGTGACTCTTCTTCTGA- 299 | |||| | | || |||| |||| |||||| ||||| ||| ||||||||||| Sbjct 227 AG-AAGA----C-T---AA-GGAAACTCCATCTAAGTTGAAGGATGAGTCTTCTTCTGAA 276 Query 300 --------TGACTCTTCTTCGGATGAGGAACCTGCGCCTGTGAAGAAGCAACCAGAACCT 351 |||||||||||| ||||||||| |||||||| |||||||| |||||||||| Sbjct 277 GAGGAGGATGACTCTTCTTCAGATGAGGAAATTGCGCCTGCGAAGAAGCGACCAGAACCT 336 Query 352 ATCAAGAAAGAC-AAGGAAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGA 410 || ||||| | | |||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 337 ATTAAGAAGG-CTAAGGTAGAGAGCAGCTCATCTGATGATGATTCTACTTCAGACGAGGA 395 Query 411 AACTGCCCCTGTGAAGAAGCAACCAGCAGCAGTCCTTGAGAAGCAACCAGAACCTATTAA 470 ||||||||||||||||||||||||||||| ||||||||||| | | || | Sbjct 396 AACTGCCCCTGTGAAGAAGCAACCAGCAG---TCCTTGAGAAG------G--C-TA--A- 440 Query 471 GAAAGACAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAATCTGC 530 | | |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 441 G---G------TAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAACTGT 491 Query 531 CCCTGCGAAGAAGCAACCCGCAGCCCTTAAGAATACCAA-AGCAGATAGCAGTTCATCAG 589 ||||| |||||||||||| |||| |||| |||| | || | ||| ||||| ||||| | Sbjct 492 CCCTGTGAAGAAGCAACCAGCAGTCCTTGAGAAGGCTAAGAT-AGAGAGCAGCTCATCTG 550 Query 590 AGGAGGAATCTTCTTCGGACGAGGAA 615 | || || |||||||| ||||||||| Sbjct 551 ATGATGATTCTTCTTCAGACGAGGAA 576 Score = 257 bits (139), Expect = 2e-67 Identities = 294/362 (81%), Gaps = 37/362 (10%) Strand=Plus/Plus Query 297 TGATGACTCTTCTTCGGATGAGGAACCTGCGCCTGTGAAGAAGCAACCAG-A-ACCTATC 354 |||||| ||| |||| || |||||| |||| ||||||||||||||||||| | ||| | Sbjct 372 TGATGATTCTACTTCAGACGAGGAAACTGCCCCTGTGAAGAAGCAACCAGCAGTCCT-T- 429 Query 355 AAGAAAGAC-AAGGAAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAAC 413 || ||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 430 GAG-AAGGCTAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAAC 488 Query 414 TGCCCCTGTGAAGAAGCAACCAGCAGCAGTCCTTGAGAAGCAACCAGAACCTATTAAGAA 473 || ||||||||||||||||||||||| ||||||||||| | | || | || Sbjct 489 TGTCCCTGTGAAGAAGCAACCAGCAG---TCCTTGAGAAG------G--C-TA--A-GA- 532 Query 474 AGACAAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAATCTGCCCC 533 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 533 --------TAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAAACTGTCCC 584 Query 534 TGCGAAGAAGCAACCCGCAGCCCTTAAGAATACCAAAGCAGATAGCAGTTCATCAGAGGA 593 | |||||||||| | |||| |||| |||| | || ||||| ||||||||||| || || Sbjct 585 TATGAAGAAGCAAACAGCAGTCCTTGAGAAGGCTAAGGCAGAGAGCAGTTCATCCGACGA 644 Query 594 -GGAATCTTCTTCGGACGAGGAACTCACACCTGCCATTAA-G--CCAA-CAGTTGTTAAG 648 ||| ||||||||||||||||||| ||| ||||| | || | |||| | ||||||||| Sbjct 645 TGGA-TCTTCTTCGGACGAGGAACCCACCCCTGCAAAGAAAGAACCAATC-GTTGTTAAG 702 Query 649 AA 650 || Sbjct 703 AA 704 Score = 187 bits (101), Expect = 3e-46 Identities = 146/168 (87%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 449 AGAAGCAACCAGAACCTATTAAGAAAGAC-AAGGTAGAGAGCAGCTCATCTGATGATGAT 507 |||||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||| Sbjct 320 AGAAGCGACCAGAACCTATTAAG-AAGGCTAAGGTAGAGAGCAGCTCATCTGATGATGAT 378 Query 508 TCTTCTTCAGACGAGGAATCTGCCCCTGCGAAGAAGCAACCCGCAGCCCTTAAGAATACC 567 ||| |||||||||||||| ||||||||| |||||||||||| |||| |||| |||| | Sbjct 379 TCTACTTCAGACGAGGAAACTGCCCCTGTGAAGAAGCAACCAGCAGTCCTTGAGAAGGCT 438 Query 568 AAAGCAGATAGCAGTTCATCAGAGGAGGAATCTTCTTCGGACGAGGAA 615 || | ||| ||||| ||||| || || || |||||||| ||||||||| Sbjct 439 AAGGTAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAA 486 Score = 165 bits (89), Expect = 1e-39 Identities = 140/162 (86%), Gaps = 13/162 (8%) Strand=Plus/Plus Query 297 TGATGACTCTTCTTCGGATGAGGAACCTG-CGCCTGTGAAGAAGCAACCAG-A-ACCTAT 353 |||||| |||||||| || |||||| ||| | ||||||||||||||||||| | ||| | Sbjct 462 TGATGATTCTTCTTCAGACGAGGAAACTGTC-CCTGTGAAGAAGCAACCAGCAGTCCT-T 519 Query 354 CAAGAAAGAC-AAGGA-AGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAA 411 || ||| | || || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 520 -GAG-AAGGCTAA-GATAGAGAGCAGCTCATCTGATGATGATTCTTCTTCAGACGAGGAA 576 Query 412 ACTGCCCCTGTGAAGAAGCAACCAGCAGCAGTCCTTGAGAAG 453 |||| |||| ||||||||||| | ||||||||||||||||| Sbjct 577 ACTGTCCCTATGAAGAAGCAA--A-CAGCAGTCCTTGAGAAG 615 Score = 91.6 bits (49), Expect = 2e-17 Identities = 74/85 (87%), Gaps = 6/85 (7%) Strand=Plus/Plus Query 1500 TAGAGCACCTCGT---GGACGTTACTCGGATAGAGGAGCACCTCGTGGCCGTTTCTCAGA 1556 ||||||||||||| ||||||| ||||||| | ||||||| ||||| ||| |||||| Sbjct 1746 TAGAGCACCTCGTGGAGGACGTTTCTCGGAT--A-GAGCACCACGTGGACGTCACTCAGA 1802 Query 1557 TAGAGGAGCACCTCGTGGCCGTTTC 1581 ||||||||||||||||||||||||| Sbjct 1803 TAGAGGAGCACCTCGTGGCCGTTTC 1827 > AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 | chr1:18098095-18101623 FORWARD LENGTH=1966 Length=1966 Score = 198 bits (107), Expect = 1e-49 Identities = 240/302 (79%), Gaps = 18/302 (6%) Strand=Plus/Plus Query 814 GAGAGTAAAGAAGAGAAAGTGACCCCAAAGAAAAAGGA-CTCTGATATTGAAATGGTGGA 872 |||||| |||| ||| | | ||||| |||||||| || ||||||| | |||||||| || Sbjct 860 GAGAGTGAAGACGAGGAGGAAACCCCTAAGAAAAA-GAGCTCTGATGTAGAAATGGTTGA 918 Query 873 TGCAGAGCAGAAATCAAATGC-AAAGCAGCCAAAGACACCATCTACT-GAGACT-CAGGG 929 ||| | ||||||||| ||| ||| ||||||||||||||||| ||| | || | || Sbjct 919 TGC--TG-AGAAATCAAGTGCTAAA-CAGCCAAAGACACCATCCACTCCTG-CTGC-TGG 972 Query 930 AGGATCAAAGACGCTATTTGCTGGAAATCTTTCCTTTCAA-ATTGAGAGATCTGACATAG 988 |||||||||||| || ||||||| ||||| | |||| || ||||| ||| | || | | Sbjct 973 AGGATCAAAGACACTCTTTGCTGCCAATCTCT-CTTTTAACATTGAAAGAGCAGATGTTG 1031 Query 989 AGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTTTCTTC-AT-AT-GATG 1045 ||||||||||||||||||||||||||||||||||||||||||| ||| | | | || | Sbjct 1032 AGAATTTCTTCAAAGAAGCTGGTGAAGTTGTTGATGTTAGATTCTCTACCAACAGAGACG 1091 Query 1046 ATGGGACATTTAAGGG-ATATGGGCATGTTGAATTTGCTTCTCCAGAAGAAGCTCAGAAG 1104 |||| | ||| |||| || ||| |||||||| || || ||| | |||||||| |||||| Sbjct 1092 ATGGTTC-TTTCAGGGGATTTGGCCATGTTGAGTTCGCATCTTCTGAAGAAGCACAGAAG 1150 Query 1105 GC 1106 || Sbjct 1151 GC 1152 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91866997350 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5