BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479405
Length=2349
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18890.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 2215 0.0
> AT3G18890.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr3:6511023-6514994 FORWARD LENGTH=2337
Length=2337
Score = 2215 bits (1199), Expect = 0.0
Identities = 1323/1384 (96%), Gaps = 4/1384 (0%)
Strand=Plus/Plus
Query 33 TGTACTAGTGTTTTCGTGATAGAAAATTTTCAAAGTTAATGAGCATTA-GCTAAATAGAG 91
|||| |||||||||||||||||||||||||||||||||||| ||| || ||| ||| |
Sbjct 65 TGTAGTAGTGTTTTCGTGATAGAAAATTTTCAAAGTTAATGTGCA-TACACTAGCTAGTG 123
Query 92 AAGAAGAAGAAGACTAAAGAACAATGGAAGGAACTTGTTTTCTCCGTGGGCAACCTCTCA 151
||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||
Sbjct 124 AAGAAGAAGAAGACTAACTAAGAATGGAAGGAACTTGTTTTCTCCGTGGACAACCTCTCA 183
Query 152 CCACAATACCATCTCTTCCCAGCAGAAAAGGGTTTCTTCTCCAAAGATGGAAGACCAATC 211
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CAACAATACCCTCTCTTCCCAGCAGAAAAGGGTTTCTTCTCCAAAGATGGAAGACCAATC 243
Query 212 GTATTGTCAGGTTTTCTGGTTTAAAGAATCACTCGGTTTCTGGAAAGTCCAGGTCTTTCG 271
| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 244 GGATTGTCAGGTTTTCAGGTTTTAAGAATCACTCGGTTTCTGGAAAGTCGAGGTCTTTCG 303
Query 272 ATCTTAGTTTCAG-GTCATCAGGTCCCATAAGAGCAAGCTCTGCAGTAACAGAAACAAAC 330
||||||| |||| | | ||||||||||| ||||||||||||| |||||||||| ||| |
Sbjct 304 ATCTTAGCCTCAGAG-CTTCAGGTCCCATTAGAGCAAGCTCTGTAGTAACAGAAGCAAGC 362
Query 331 CCTGCTAACTTAAATTCCAAAGAAGAAGACCTTGTCTTTGTAGCCGGTGCTACTGGTAAA 390
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CCTACCAACTTAAATTCCAAAGAAGAAGACCTTGTCTTTGTAGCCGGTGCTACTGGTAAA 422
Query 391 GTTGGTTCTAGAACTGTGAGAGAGCTACTGAAGCTCGGATTTCGGGTTAGAGCTGGAGTT 450
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 423 GTTGGTTCTAGAACTGTGAGAGAGCTACTGAAGCTGGGATTTCGGGTTAGAGCTGGAGTT 482
Query 451 CGAAGCGCTCAGAGAGCAGGAAGTCTTGTGCAATGTGTTAAGGAAATGAAGCTCCAGAAC 510
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 483 CGAAGTGCTCAGAGAGCAGGAAGTCTTGTGCAAAGTGTTAAGGAAATGAAGCTCCAGAAC 542
Query 511 ACTGATGAAGGAACTCAACCTGTAGAAAAGCTTGAAATTGTGGAGTGTGACTTGGAGAAG 570
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 ACAGATGAAGGAACTCAACCTGTAGAAAAGCTTGAAATTGTGGAGTGTGACTTGGAGAAG 602
Query 571 AAAGATTCAATACAGCCCGCATTGGGAAATGCATCAGTGATTATATGCTGTATCGGTGCT 630
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 603 AAAGATTCAATACAGCCCGCATTGGGAAATGCATCGGTGATTATATGCTGTATTGGTGCT 662
Query 631 AGCGAGAAAGAGATCTCTGATATTACCGGCCCTTACAGGATTGATTACCTCGCCACCAAA 690
||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 663 AGCGAGAAAGAGATCTCCGATATTACCGGTCCTTACAGGATCGATTACCTAGCCACCAAA 722
Query 691 AACCTTGTTGATGCTGCAACATCTGCAAAAGTTAATAACTTCATTTTGGTGACATCCTTG 750
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 723 AACCTTGTTGATGCTGCAACATCAGCAAAAGTTAATAACTTCATTTTGGTGACATCCTTG 782
Query 751 GGGACAAATAAATTTGGATTTCCTGCTGCGATTCTCAACCTATTCTGGGGAGTTCTTTGT 810
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 783 GGGACAAATAAATTTGGATTTCCCGCTGCGATTCTCAACCTATTCTGGGGAGTTCTTTGC 842
Query 811 TGGAAGAGAAAAGCTGAAGAAGCATTGATTGCAAGCGGTCTCAATTACGCAATAGTTAGA 870
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 843 TGGAAGAGAAAAGCTGAAGAAGCATTGATTGAAAGCGGTCTTAATTACGCAATAGTTAGA 902
Query 871 CCTGGAGGAATGGAGAGACCGACTGATGCATACAAAGAAACTCATAATCTCACTCTTTCT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 903 CCTGGAGGAATGGAGAGACCGACTGATGCATACAAAGAAACTCATAATCTCACTCTTGCT 962
Query 931 CTAGACGATACATTGTTTGGTGGTCAGGTCTCAAATCTCCAGGTGGCAGAGTTGCTTGCT 990
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 963 CTAGACGATACATTGTTTGGTGGTCAGGTCTCAAATCTCCAGGTTGCAGAGTTGCTTGCT 1022
Query 991 TGCATGGCAAAGAATCCTCAACTTTCTTTCTCCAAGATTGTGGAAGTGGTTGCTGAAACA 1050
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1023 TGCATGGCAAAGAATCCTCAACTTTCTTTCTCTAAGATTGTGGAAGTGGTTGCTGAAACA 1082
Query 1051 ACTGCACCATTAACTCCAATTGAAAAGCTTCTTGAAAAGATTCCTTCCAAACGTCCTTAT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1083 ACTGCACCATTAACTCCAATTGAAAAGCTTCTTGAAAAGATTCCTTCCAAACGGCCTTAT 1142
Query 1111 GTGCCTCCACCGAAGGCATCAGTTGCAGCCAAAGAGGTCAAACCAGTCCCTACTAAGCCT 1170
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1143 GTCCCTCCACCGAAGGCATCAGTTGCAACCAAAGAGGTCAAACCAGTCCCTACTAAGCCT 1202
Query 1171 GTCACTCAAGAGCCAACAGCTCCCAAAGAGGATGAAGCACCTCCAAAAGAAAAAGATGTG 1230
||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1203 GTCACTCAAGAACCAACAGCTCCTAAAGAGGATGAAGCACCTCCAAAAGAAAAAAATGTG 1262
Query 1231 AAACCTAGGCCGCTGTCTCCTTATGCCGCCTACGAAGACTTGAAAACTCCAACATCTCCT 1290
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1263 AAACCTAGGCCGCTGTCTCCTTATGCCTCCTACGAAGACTTGAAACCTCCAACATCTCCT 1322
Query 1291 ATTCCAAGTTCGACCACATCAGTCGGTCCTGCCAAATCTAAGGAAGTAGATGCCACTCAG 1350
||||||| |||||||||||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct 1323 ATTCCAAATTCGACCACATCGGTCAGTCCTGCCAAATCTAAGGAGGTAGATGCCACTCAG 1382
Query 1351 GTTCTTGTTGATGCCAATGTAGTGCCAGTGCCAGATAGTACCTCAAATGTCCCagtagta 1410
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GTTCCTGTTGAGGCCAATGTAGTGCCAGTGCCAGATAGTACCTCAAATGTCCCAGTAGTA 1442
Query 1411 gaag 1414
||||
Sbjct 1443 GAAG 1446
Score = 887 bits (480), Expect = 0.0
Identities = 692/785 (88%), Gaps = 51/785 (6%)
Strand=Plus/Plus
Query 1443 agtagaagtaaagcaagctgaggaaaagaaagagaGGCCTCTTTCCCCTTATGCCCGCTA 1502
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AGTAGAAGTAAAGCAAGTTGAGGAAAAGAAAGAGAGGCCTCTTTCCCCTTATGCCCGCTA 1498
Query 1503 TGAAG-ATCTAAAACCACCCTCATCGCCCTCTCCTACAGCTTCGGGTACCAAAAAGAATG 1561
|| || | |||||||||||||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 1499 TG-AGAACCTAAAACCACCCTCATCGCCCTCTCCTACAGCTTCGAGTACCAGAAAGAGTG 1557
Query 1562 ATTCTTTGTCGCCTGGTCCAACAGATTCTGATACTGATAAAAGCTCAACAGTTGCAACAA 1621
|||||||||||||||||||||| |||||||||||||||||||| | | |||| |
Sbjct 1558 ATTCTTTGTCGCCTGGTCCAACCGATTCTGATACTGATAAAAG-----C---T-CAAC-A 1607
Query 1622 GTGTCACTGAGACAGCAGTTGAAACAAGTGCCACTGAGACAGCAGTTGAAACAAGTGTCA 1681
|| | | || | |||| || ||||||||| ||||||| |||||||||||
Sbjct 1608 --GT---T--G-CA--A----AAAC---TGTCACTGAGACGGCAGTTGCAACAAGTGTCA 1650
Query 1682 CTGAGACAGCAGTTGAAACAAGTGTCCCTGAGACAGCAGTTGCATCAAGTGCCACTGAGA 1741
||||||| |||||| ||||||||| |||||||||||||||||| | |||| ||||||||
Sbjct 1651 CTGAGACCTCAGTTGCAACAAGTGTACCTGAGACAGCAGTTGCAACGAGTGTCACTGAGA 1710
Query 1742 CAGCAGCCCCAGCCACACCAAGAATGAGGCCTCTTTCTCCTTATGCAGTTTACGCAGACC 1801
||||||| ||||||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1711 CAGCAGCACCAGCCACATCAAAAATGAGGCCTCTTTCTCCTTATGCAATTTACGCAGACC 1770
Query 1802 TGAAACCACCAACCTCACCAACTCCTGCATCAACTGGTCCCAAGGAAGCAGCATCTGAGA 1861
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1771 TGAAACCACCAACCTCACCAACTCCTGCATCAACAGGTCCCAAGGAAGCAGCATC----- 1825
Query 1862 TAACAGCATCTGCAGAAGATAACTCAGAGTTGCCTGGAGGCAATAATGATGTGCTGAAAA 1921
| | | |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1826 T----G----T--AGAAGACAACTCAGAGTTACCTGGAGGCAATAATGATGTGCTGAAAA 1875
Query 1922 CAGTTGATGGAAGTGTGAACACTACTCCATCTTCCTCTATACCGGAAGCAGTACCTGTTG 1981
|||||||||||| | ||||||| | |||| |||| | | ||||||||||||||||||||
Sbjct 1876 CAGTTGATGGAAATCTGAACACAATTCCACCTTC-T--ACACCGGAAGCAGTACCTGTTG 1932
Query 1982 TTAGCAATGCGATAGACACTTCCCTTGCTTCAGAAGACAATACAGCTCAGCCAAAGCCAA 2041
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1933 TTAGCAGTGCGATAGACACTTCCCTTGCTTCAGGAGACAATACAGCTCAGCCAAAGCCAA 1992
Query 2042 GGCCCTTATCACCTTATACAATGTACGAGGACATGAAGCCTCCAACATCACCACTTCCAT 2101
|||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1993 GGCCTTTATCACCTTACACAATGTACGCGGACATGAAGCCTCCAACATCACCACTTCCAT 2052
Query 2102 CTCCAGTCATCAATCATTAGTTATGTGAGACGAGAATTGGCCTCTTAAACCCTGGAGCTT 2161
||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2053 CTCCAGTCACCAATCATTAGCTATGTGAGACGAGAATTGGCCTCCTAAACCCTGGAGCTT 2112
Query 2162 CTTCTTAATTGCAGATTATAAACAGTGAGTGAGTGAGAAAGAGATGGGGCAATTCAGTTT 2221
|||||||||||||| || |||||| ||||| || ||| | ||||||||||||||||||
Sbjct 2113 CTTCTTAATTGCAGGTTGTAAACAATGAGTAAG--AGA--GTGATGGGGCAATTCAGTTT 2168
Query 2222 TGCAG 2226
|||||
Sbjct 2169 TGCAG 2173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116615866035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5