BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479421 Length=454 Score E Sequences producing significant alignments: (Bits) Value AT3G19030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 676 0.0 > AT3G19030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pyridoxine biosynthetic process, homoserine biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49500.1); Has 22 Blast hits to 22 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6563979-6564424 REVERSE LENGTH=446 Length=446 Score = 676 bits (366), Expect = 0.0 Identities = 426/454 (94%), Gaps = 8/454 (2%) Strand=Plus/Plus Query 1 GACTCACAAAGACAAGAGTTCTCTAGACGCGgaaaacatagagaaaacaaaaaaccctca 60 |||||||||||||||||||||||||||||||||||||||||| || | |||||| ||| | Sbjct 1 GACTCACAAAGACAAGAGTTCTCTAGACGCGGAAAACATAGA-AAGA-AAAAAA-CCTAA 57 Query 61 aaagcgcaaaacacgaaacaagaagaaaagtaaaacaTTTTTAGTTCTCTCCTACGAATT 120 |||||||||||||||||||||||||||||| |||||| ||| ||| ||||||||||| Sbjct 58 AAAGCGCAAAACACGAAACAAGAAGAAAAGAAAAACA--TTT--CTCT-TCCTACGAATT 112 Query 121 AAGTACGTACAACATGGTGTCTCAAAAGCTAGAGATTTGCATCGAATTGGTGAAAATAGC 180 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 113 AAGCACAAACAACATGGTGTCTCAAAAGCTAGAGATTTGCATCGAATTGGTGAAAATTGC 172 Query 181 TGTTGTTTTCGTCGCCACCGTTGCTGAATCAATAGAAGAAGCTTTCCGTAAGCCTCCACC 240 ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 173 TGTTGTTTTCGTCACCACCGTGGCTGAATCAGTAGAAGAAGCTTTCCGTAAGCCTCCACC 232 Query 241 GTCGCTTCCAACAGTTCACGGTGGTCGCCGGAATAATTACGCCGCCGTTCCCATTCCTCT 300 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 GTCTCTTCCAGCAGTTCACGGTGGTCGCCGGAATAATTACGCCGCCGTTCCCATTCCTCT 292 Query 301 TGTTGGATTCATGTGATGAGCtttttagttttttttttttttttGGTTTTGGCCTCGTTA 360 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| Sbjct 293 TGTTGGATTCATGTGATGAGCTTCTTAGTTTTTTATTTTTTTTTGGTTTTGGCCTCATTA 352 Query 361 AAGTTAGTAGTTCTCGTGCCTTGTGGCGTTTTGGATGTTGTTGATTTGTGTATAAAGTAT 420 ||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 353 AAGTTAGTAGTTCCCGTGCCTTGTGGCGTTTTGGATATTGTTTATTTGTGTATAAAGTAT 412 Query 421 AACCAAAAGATAATGAAGAGTTTACAGATGAATC 454 |||||||| ||||||||||||||||||||||||| Sbjct 413 AACCAAAACATAATGAAGAGTTTACAGATGAATC 446 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21615132070 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5