BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479461
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19450.1 | Symbols: CAD4, ATCAD4, CAD, CAD-C | GroES-like zi... 1958 0.0
AT4G34230.1 | Symbols: CAD5, ATCAD5, CAD-5 | cinnamyl alcohol d... 634 0.0
> AT3G19450.1 | Symbols: CAD4, ATCAD4, CAD, CAD-C | GroES-like
zinc-binding alcohol dehydrogenase family protein | chr3:6744598-6747214
FORWARD LENGTH=1568
Length=1568
Score = 1958 bits (1060), Expect = 0.0
Identities = 1349/1478 (91%), Gaps = 61/1478 (4%)
Strand=Plus/Plus
Query 1 AAGAGGTTTGGTTGGTCGAGCTTACTGACTTaaaaaa-aTACACATCCACCAAAAATTAA 59
|||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||
Sbjct 1 AAGAGGTTTGGTTGGTCGAGCTTACTGA-TTAAAAAATATACACGTCCACCAAATATTAA 59
Query 60 AATAATGTATTCCATTTTTCCTCCTCTCTTTTGGTATTAAATAAATCTCTTATAATTTCC 119
|| ||| ||| |||||||||||||||||||||||||||| || ||| | |||| ||||||
Sbjct 60 AACAATATATCCCATTTTTCCTCCTCTCTTTTGGTATTACATTAATATTTTATTATTTCC 119
Query 120 CCATTTGCTCTG--TATAT--ACATATGTCAATAGAGTGCCTCTATAGTCATGTTTCCAT 175
|||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 120 CCATTTGCTCTGTATATATAAACATATGTCAATAGAGTGCCTCTACAGTCATGTTTCCAT 179
Query 176 AG-----A-----CA-C--------TCT-T-Caaaactaaagaaa-acaaaaa-aaaatt 212
|| | || | ||| | |||||||||||||| | ||||| |||| |
Sbjct 180 AGACATAATCTCTCACCATTGTTTTTCTCTGCAAAACTAAAGAAACAAAAAAAGAAAAAT 239
Query 213 ccggagaaaccaagaaaacaaaaaatgggaa--gt-gaaggaggagaaaagaagGCTTTA 269
||||||||||||||||| || ||||||||| || |||| |||||||||||||||||||
Sbjct 240 -CGGAGAAACCAAGAAAA-AAGAAATGGGAAGTGTAGAAGCAGGAGAAAAGAAGGCTTTA 297
Query 270 GGATGGGCTGCAAGAGATCCTTCTGGTGTTCT-TGCTCCTTACTCCTACACTTTAAGGAG 328
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 298 GGATGGGCTGCAAGAGATCCTTCTGGTGTTCTCT-CTCCTTACTCCTACACTTTAAGGAG 356
Query 329 CACCGGAGCTGATGATGTGTATATAAAGGTTATATGCTGTGGAATATGCCATACTGATAT 388
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CACAGGAGCAGATGATGTGTATATAAAGGTTATATGCTGTGGAATATGCCATACTGATAT 416
Query 389 CCACCAGATTAAAAATGATCTTGGAATGTCTAATTATCCTATGGTTCCTGGGCACGAGGT 448
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TCACCAAATTAAAAATGATCTTGGAATGTCTAATTATCCTATGGTTCCTGGGCACGAGGT 476
Query 449 GGTAGGTGAGGTGGTGGAAGTGGGATCAGATGTGAGCAAGTTCACCGTAGGAGATGTAGT 508
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGTAGGTGAGGTGTTGGAAGTGGGATCAGATGTGAGCAAGTTCACCGTAGGAGATGTAGT 536
Query 509 CGGAGTCGGCGTGATTGTCGGATGCTGCGGAAGCTGCAAACCATGCAGCTCAGAACTTGA 568
||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 537 CGGAGTCGGCGTGGTCGTTGGATGCTGCGGTAGCTGCAAACCATGCAGCTCAGAACTTGA 596
Query 569 GCAGTACTGTAACAAGAGAATCTGGAGTTACAATGATGTCTACACCGATGGAAAACCCAC 628
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 597 GCAGTATTGTAACAAGAGAATCTGGAGTTACAACGATGTCTACACCGATGGAAAACCTAC 656
Query 629 ACAAGGTGGATTCGCCGACACCATGATCGTCAATCAAAAGTTTGTGGTGAAGATTCCAGA 688
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCAAGGTGGCTTCGCCGACACCATGATCGTCAATCAAAAGTTTGTGGTGAAGATTCCAGA 716
Query 689 AGGAATGGCGGTGGAGCAGGCTGCACCGCTGCTATGCGCCGGAGTAACCGTTTACAGTCC 748
|||||||||||||||||||||||||||||| || ||||| |||||||| ||||| |||||
Sbjct 717 AGGAATGGCGGTGGAGCAGGCTGCACCGCTACTCTGCGCGGGAGTAACGGTTTATAGTCC 776
Query 749 GTTGAGCCATTTCGGTCTAATGGCAAGTGGGCTCAAAGGAGGGATTCTAGGGTTAGGTGG 808
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 777 GTTGAGCCACTTCGGTCTAATGGCGAGTGGGCTTAAAGGAGGGATTCTAGGGTTAGGTGG 836
Query 809 AGTAGGACACATGGGTGTGAAGATAGCTAAAGCAATGGGACATCATGTGACTGTGATAAG 868
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 AGTAGGGCACATGGGTGTGAAGATAGCTAAAGCAATGGGACACCATGTGACTGTGATAAG 896
Query 869 CTCATCAGATAAGAAAAAAGAAGAAGCAATGGAACATTTAGGAGCTGATGACTATGTGGT 928
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 897 CTCATCAGATAAGAAAAAAGAAGAAGCTATCGAACATTTAGGAGCTGACGACTATGTGGT 956
Query 929 GAGCTCTGATCCAGCAGAGATGCAAAGACTCGCAGATTCTCTTGACTACATCATCGACAC 988
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 957 GAGCTCTGATCCAGCAGAGATGCAAAGACTCGCAGATTCCCTTGACTACATCATTGACAC 1016
Query 989 CGTACCTGTGTTTCACCCTCTCGAGCCTTACTTAGCTTGTCTTAAACTCGATGGGAAATT 1048
|||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 1017 CGTACCGGTGTTTCACCCTCTCGACCCTTACTTGGCTTGTCTTAAACTCGACGGGAAATT 1076
Query 1049 GATTCTCATGGGTGTTATCAACACTCCTCTTCAGTTCTTGACTCCTCTCGTCATTCTTGG 1108
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1077 GATTCTCATGGGTGTTATCAACACTCCTCTTCAGTTCGTGACCCCTCTCGTCATTCTTGG 1136
Query 1109 GAGGAAAGTGATATCGGGGAGCTTCATAGGGAGCATTAAAGAGACAGAAGAAGTGTTGGC 1168
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1137 GAGGAAAGTGATATCAGGGAGCTTTATAGGGAGCATTAAAGAGACAGAAGAAGTGTTGGC 1196
Query 1169 TTTCTGCAAAGAGAAAGGGCTTACGTCGACCATTGAAACTGTGAAGATTGATGAACTTAA 1228
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1197 TTTCTGCAAAGAGAAAGGGCTTACGTCGACGATTGAAACTGTGAAGATCGATGAGCTTAA 1256
Query 1229 CACTGCGTTTGAGAGGCTTAGCAAGAACGATGTTCGTTACAGATTTGTCGTTGATGTTGC 1288
|| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1257 CATTGCGTTTGAGAGGCTTCGCAAGAACGATGTTCGTTACAGATTTGTGGTTGATGTTGC 1316
Query 1289 TGGAAGTAACCTCGTGGAGGAGGCTGCAACAACTACAAGCTAAAGAGGGCA----A-A-- 1341
|||||||| || ||||||||||||||||||||||||| |||||||||||| | |
Sbjct 1317 AGGAAGTAATCTGGTGGAGGAGGCTGCAACAACTACAAACTAAAGAGGGCAGGGCACATT 1376
Query 1342 -ATA--T----------T-GTAACGGGCCTGGTAGGTCCAACGAATGTTTTGTTGT-GTC 1386
||| | | ||||||||| || | | |||||||||||||||||||| |||
Sbjct 1377 GATACATGAACGAAAAATTGTAACGGGCTTGTTTG-TCCAACGAATGTTTTGTTGTTGTC 1435
Query 1387 tttttttCAAATGGTTCAAAAACGAATGCTTTGGTTTT 1424
||||| ||||||||||||| ||||||||||||| |||
Sbjct 1436 TTTTT--CAAATGGTTCAAACACGAATGCTTTGGCTTT 1471
> AT4G34230.1 | Symbols: CAD5, ATCAD5, CAD-5 | cinnamyl alcohol
dehydrogenase 5 | chr4:16386727-16388722 REVERSE LENGTH=1301
Length=1301
Score = 634 bits (343), Expect = 0.0
Identities = 865/1108 (78%), Gaps = 72/1108 (6%)
Strand=Plus/Plus
Query 231 caaaaaatgggaagtgaa-ggagg-agaaaagaagGCTTTAGGATGGGCTGCAAGAGATC 288
||||||||||||| | || ||||| ||| | ||| | ||| |||||||| ||||| |
Sbjct 51 CAAAAAATGGGAA-T-AATGGAGGCAGAGAGGAAAACAACAGGCTGGGCTGCCAGAGACC 108
Query 289 CTTCTGGTG-TTCT-TGCTCCTTACTCCTACACT-TTAAG-GAGCACCGGAGCTGATGAT 344
| ||||| | | || | |||||||| | |||||| || || ||| || ||| | || |||
Sbjct 109 CATCTGG-GATCCTCT-CTCCTTACACTTACACTCTT-AGAGAG-ACTGGACCAGAGGAT 164
Query 345 GTGTATATAAAG-GTTATATGCTGTGGAATATGCCATACTGATATCCACCAGATTAAAAA 403
||| | || ||| | || ||||||||||| ||||| || ||| | || || | ||||||
Sbjct 165 GTGAACAT-AAGAATCATTTGCTGTGGAATCTGCCACACCGATCTTCATCAAACTAAAAA 223
Query 404 TGATCTTGGAATGTCTAATTATCCTATGGTTCCTGGGCACGAGGTGGTAGGTGAGGTGGT 463
||||||||| ||||||||||| || |||||||||||||| || |||||||| || || ||
Sbjct 224 TGATCTTGGCATGTCTAATTACCCCATGGTTCCTGGGCATGAAGTGGTAGGGGAAGTAGT 283
Query 464 GGAAGTGGGATCAGATGTGAGCAAGTTCACCGTAGGAGATGTAGTCGGAGTCGGCGTGAT 523
||| |||||||||||||||||||||||||||||||| || |||| ||||| || ||
Sbjct 284 GGAGGTGGGATCAGATGTGAGCAAGTTCACCGTAGGGGACATAGTTGGAGTTGGT-TGCC 342
Query 524 T-GTCGGATGCTGCGGAAGCTGCAAACCATGC-AGCTCAGAACTTGAGCAGTACTGTAAC 581
| || ||||| |||||| | || | || ||| || ||| || || ||||| ||| |
Sbjct 343 TCGTTGGATGTTGCGGAGGTTGTAGCCCCTGCGAGAG-AGATCTGGAACAGTATTGTC-C 400
Query 582 AA-GA-GAATCTGGAGTTACAATGATGTCTACACCGATGGAAAACCCACACAAGGTGGAT 639
|| || || | ||||| ||||||||||| |||| | |||| |||| |||||||| || |
Sbjct 401 AAAGAAGATT-TGGAGCTACAATGATGTTTACATCAATGGTCAACCTACACAAGGCGGCT 459
Query 640 TCGCCGACA-CCAT-GATCGT-CAATCAAAAGTTTGTGGTGAAGATTCCAGAAGGAATGG 696
|||| | | ||| | |||| || |||||||||||||| |||||||||||||||||||
Sbjct 460 TCGCTAA-AGCCACCG-TCGTTCAC-CAAAAGTTTGTGGTCAAGATTCCAGAAGGAATGG 516
Query 697 CGGTGGAGCAGGCTGCACCGCTGCTATGCGCCGGAGTAACCGTTTACAGTCCGTTGAGCC 756
|||| ||||||||||| ||||| || ||||| || || || || |||||||| ||||||
Sbjct 517 CGGTTGAGCAGGCTGCGCCGCTACTGTGCGCTGGTGTGACTGTGTACAGTCCACTGAGCC 576
Query 757 A-TTTCGGTCT-AATGGCAAGTGGGC-TCAA-AGGAGGGATTCTAGGGTTAGGTGGAGTA 812
| ||| ||||| || ||| ||| | || |||||| || |||||||||||||||||
Sbjct 577 ACTTT-GGTCTGAAA--CAACCAGGCCT-AAGAGGAGGTATACTAGGGTTAGGTGGAGTC 632
Query 813 GGACACATGGGTGTGAAGATAGCTAAAGCAATGGGACATCATGTGACTGTGATAAGCTCA 872
|| |||||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||
Sbjct 633 GGTCACATGGGTGTGAAAATAGCCAAAGCAATGGGTCACCATGTGACTGTCATAAGCTCA 692
Query 873 TCAGATAAGAAAAAAGAAGAAGCAATGGAACAT-TTAGGAGCTGATGACTATGTGGT-GA 930
||| | ||||| | |||||| ||| || || || || ||||||||||| || ||| | |
Sbjct 693 TCAAACAAGAAGAGAGAAGAGGCATTGCAAGATCTT-GGAGCTGATGATTACGTGATCG- 750
Query 931 GCTCTGATCCA-GCAGA-GATGCAAAGACTCG-CAGATTCTCTTG-ACTACATCATCGAC 986
| || || ||| || || |||| | || | | | ||||| ||| | ||| | || |||
Sbjct 751 GATCCGA-CCAAGC-GAAGATG-AGCGAATTGGCTGATTCG-TTGGATTACGTAATTGAC 806
Query 987 ACCGTACCTGTGTT-TCACCCTCTCGAGCCTTACTTAG-CT-TGTCTTAAACTCGATGGG 1043
|| || ||||| | ||| | || ||||| || || | || || ||||| || |||||
Sbjct 807 ACGGTGCCTGT-TCATCATGCACTTGAGCCATATTT-GTCTCTG-CTTAAGCTTGATGGT 863
Query 1044 AAATTGATTCTCATGGGTGTTATCAACACTCCTCTT-CAGTT-CTTGACTCCTCT-CGTC 1100
||| | ||||||||||| |||||||||| ||| || ||||| || |||||||| | |
Sbjct 864 AAACTCATTCTCATGGGAGTTATCAACAATCCA-TTACAGTTTCTC-ACTCCTCTGCTT- 920
Query 1101 ATTCTTGGGAGGAAAGTGATATCGGGGAGCTTCATAGGGAGCATTAAAGAGACAGAAGA- 1159
|| |||||||||||||||||| |||||||||||||||||||||| || |||||||| ||
Sbjct 921 ATGCTTGGGAGGAAAGTGATAACGGGGAGCTTCATAGGGAGCATGAAGGAGACAGAGGAG 980
Query 1160 AGTG-TTG-GCTTTCTGCAAAGAGAAAGGGCTT-ACGT-CGACCATTGAAACTGTGAAGA 1215
| || ||| | || ||| ||||| |||||| || | || ||| || ||| ||||||||
Sbjct 981 A-TGCTTGAG-TT-CTGTAAAGA-AAAGGGTTTGA-GTTCGATTATCGAAGTTGTGAAGA 1035
Query 1216 TTGATGAACTTAACACTGCGTTTGAGAGGCTT-AGCAAGAACGATGTTCGTTACAGATTT 1274
| ||| | ||||||||||||||||||| || || ||||||||||| ||||| || ||
Sbjct 1036 TGGATTATGTTAACACTGCGTTTGAGAGACTCGAG-AAGAACGATGTGCGTTATAGGTTC 1094
Query 1275 GTCGTTGATGTTGCTGGAAGTAACCTCG 1302
||||||||||| | ||||| || ||||
Sbjct 1095 GTCGTTGATGTCGAAGGAAGCAATCTCG 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70180361910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5