BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479515
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19970.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2300 0.0
> AT3G19970.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:6958648-6961652 FORWARD LENGTH=1851
Length=1851
Score = 2300 bits (1245), Expect = 0.0
Identities = 1534/1667 (92%), Gaps = 46/1667 (3%)
Strand=Plus/Plus
Query 1 CAGGACTCTTTTTCTATTAATGAGATTGGTATGCTAAATTTGGAGTATATTGGATTAGAT 60
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 192 CAGGACTCTTTTTCTATTAATGAGATTGGTATGCTAGATTTGGAGTGTATTGGATTAGAT 251
Query 61 TGTGGTTATCATGGGTTCTTTGTCTGGGATCATTCAACGGCCTCTTGTTGCTGCTGCTGC 120
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 252 TGTGGCGATCATGGGTTCTTTGTCTGGGATCATTCAACGGCCACTTGTTGCTGCTGCTGC 311
Query 121 TGTTATTGCCGCTTCTGTGTCTGCAGATGTCTCTGAGAGGTTCTCATCTCTTAGATCACT 180
||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TGTGATTACAGCTTCTGTGTCTGCAGATGTCTCTGAGAGGTTCTCATCTCTTAGATCACT 371
Query 181 TGTTCGAGGTTCTGATTCGGAGCAGATTGCTCCTTCGGTGCCCGGTTCAGTTCAGGATGA 240
|||||||||||||| || ||||||||||||||||| ||| | |||| ||||||||| ||
Sbjct 372 AGTTCGAGGTTCTGAATCAGAGCAGATTGCTCCTTCAGTGTCTGGTTTAGTTCAGGAAGA 431
Query 241 AAGGTCCTTGTGGGTTTCTCAAATCTCGGCTTCCAAGCTCT-CGGATTTATCTTTTGTGT 299
|||||||||||||||||||||| ||||||| |||||||| | | ||||||||||||||||
Sbjct 432 AAGGTCCTTGTGGGTTTCTCAAGTCTCGGCCTCCAAGCT-TGCAGATTTATCTTTTGTGT 490
Query 300 CGAGGATTCATGTTCCTGTACCAAATGTTGATCTCTTAGCTTCTAATCCCAGCTGTAGTC 359
|||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 491 CGAGGATTTGTGTTCCTGTACCAAATGTTGATCTCCTAGCTTCTAATCCTAGCTGTAGTC 550
Query 360 TCGCTACTTCTGTTACTTCTCTGTCCGCTCTTCGTTGTGTTTATCAGTCTGCTGAATTGG 419
||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct 551 TCGCTACTTCTGTTACTTCTCTGTCCGCTCTTCGTAGTGTTTATCAGTCTGCAGAGTTGG 610
Query 420 CTAAAGCATCAAAACC-ATCGGCATTCACAATCAGG-GCCTCGCTTGTGGTTCCTGATAT 477
|||||||||| ||||| | |||||||||||| || ||||| |||||||||||||||||
Sbjct 611 CTAAAGCATCGAAACCGGT-TGCATTCACAATC-GGTGCCTCACTTGTGGTTCCTGATAT 668
Query 478 TTCCTACAGATGGCATTTACCTGAGCCCAATGCAATCGATTTGTCTGGTTCCTCGAGTTG 537
||||||||||||||||||||||||||| | |||| ||||| |||||||||| ||||||||
Sbjct 669 TTCCTACAGATGGCATTTACCTGAGCCTAGTGCAGTCGATATGTCTGGTTCTTCGAGTTG 728
Query 538 TGTGTCTGAGAAGAATAGAACCGTTGTGGTTTTGCTTGGATGGCTTGGATCGAAGCAGAA 597
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 729 TGTGTCTGAAAAGAATAGAACTGTTGTGGTTTTGCTTGGATGGCTTGGATCAAAGCAGAA 788
Query 598 GCATCTGAAGAAATATGCGGATTGGTATACTTCAAGGGGTTACCATGTCATTACATTTAC 657
|||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||
Sbjct 789 GCATCTGAAGAAATATGCTGATTGGTACACTTCAAAGGGTTACCATGTCATTACATTTAC 848
Query 658 TCTTCCCATGAATGAGATTATGAGTTATCAAGTTGGAGGAAAAGCAGAGAAGAACATCGA 717
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 849 TCTTCCGATGAATGAGATTATGAGTTATCAAGTTGGAGGGAAAGCAGAGAAGAACATCGA 908
Query 718 GTCGTTGGTTAATCACTTGGCCGATTGGTTGGATGAAGAGCAAAAGAAAAATCTCGTCTT 777
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 909 GTCGCTGGTTAATCACTTGGCTGATTGGTTGGATGAAGAGCAAAAGAAAAATCTCGTCTT 968
Query 778 TCACACCTTCAGCAACACCGGGTGGTTAACATATGGAGCTATTCTAGAAAAGTTTCAGAA 837
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 969 TCACACCTTCAGCAACACCGGGTGGTTAACATATGGAGCCATTTTGGAAAAGTTTCAGAA 1028
Query 838 GCAAGATTCATCATTGATGGGAAGGGTTAAAGGTTGCATAGTGGACTCAGCTCCTGTTGC 897
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1029 GCAAGATTCATCATTGATGGGAAGAGTTAAAGGTTGCATAGTGGACTCAGCTCCTGTTGC 1088
Query 898 TGATGCAGATCCTACGGTATGGGCATCAGGTTTCTCAGCAGCGTTCTTGAAGAAAAACAG 957
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1089 TGCTGCAGATCCTACGGTATGGGCATCAGGTTTCTCAGCTGCGTTCTTGAAGAAAAGCAG 1148
Query 958 CGTAGCTACTAAAGGATCTACGAGCTCGTCAAATGAGTCAAACGGTATAAACTTCTCCCA 1017
||||| |||||||||||| ||||||| ||| |||||||||||||||||||| |||||||
Sbjct 1149 TGTAGCCACTAAAGGATCTGCGAGCTCATCATATGAGTCAAACGGTATAAACATCTCCCA 1208
Query 1018 GCCTAAACCGGGC-GCAACAGAAACAGCTCTGCTTTTGGTTCTTGAAAAGTTCTTTGCGG 1076
||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1209 GCCTAAACC-CGCTGCAACAGAAACAGCTTTGCTTTTGGTTCTTGAAAAGTTCTTTGCGG 1267
Query 1077 TGATTCTAAATCTTCCCAAAGTAAACAGGAGACTTGCCGATGTTCTAGACACTTTATCAT 1136
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1268 TGATTCTAAATCTTCCCAAAGTAAACAGGAGACTTGCCGATGTTCTTGACACATTATCAA 1327
Query 1137 CAGCACAACCAAGATGTCCACAGCTATACATATACAGCTCTGCAGATAGAGTTATACCCG 1196
||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||| |
Sbjct 1328 CAGCACAACCAAGTTGTCCACAGTTATACATTTACAGCTCTGCAGACAGAGTTATACCGG 1387
Query 1197 CGGAACAAGTTGAATCATTCATTGTAGAACAGAGGAAAGCTGGACACGAGGTCCGTGCTT 1256
||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 1388 TGGAACAAGTTGAATCATTCATTGTAGAGCAGAGGAAAGCAGGACATGAGGTCCGTGCTT 1447
Query 1257 GCAACTTCATATCTTCACCTCATGTAGACCATTTCCGGAGTAACCCAGAACTGTATACAG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1448 GCAACTTCATATCTTCACCTCATGTAGACCATTTCCGGAGTAACCCAGAACTGTATACAG 1507
Query 1317 CTGAGCTCAACCATTTCATGGACAACTTTGTCCTTTCTTGCTGCAACCATTCTTCATAGC 1376
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1508 CTGAGCTCAACCATTTCATGAACAACTTTGTCCTTTCTTGCTGCCACCATTCTTCATAGC 1567
Query 1377 GACTTCCACAAGTGTTGTTGTCGCTAACCTTTTTTGGGGTC-----A--T-TT-TA-AA- 1425
||||||||||||||||||||| ||||||| ||||||||||| | | || || ||
Sbjct 1568 GACTTCCACAAGTGTTGTTGTTGCTAACCATTTTTGGGGTCCTTTTAACTCTTATACAAG 1627
Query 1426 AAAG-------T--T-ACTGATTGATGATTCTTTTTGGTTTGGATAGGTCTATAGATTCA 1475
|||| | | ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1628 AAAGAGAAAAATAGTTACTGATTGATGATTCTTTTTGGTTTGGATTGGTTTATAGATTCA 1687
Query 1476 AATTCATT---CCTTTGTAAATGGTTGGATATTGTACGTTTAGGAGAATGAGAAGATTCA 1532
|||||||| ||||||||||| |||||||||||||| ||||||||||||| | ||||||
Sbjct 1688 AATTCATTATTCCTTTGTAAATTGTTGGATATTGTACATTTAGGAGAATGA-A-GATTCA 1745
Query 1533 AGAAAGTGACGGTTCTTGTCCTTTGTATTGGA-A-----AT-TT--GG--GTCCTTTGTT 1581
||||||||||| | ||||||||||||| |||| | || || || ||| ||||||
Sbjct 1746 AGAAAGTGACG-TCCTTGTCCTTTGTAGTGGAGATTTGGATCTTATGGTTGTCTTTTGTT 1804
Query 1582 ATATGTTCAGAGAGGGTTGTTAAGACCCCAATCATAAAGTATTTGGC 1628
|| |||||| ||||||||||||||| |||||||||||||| ||||||
Sbjct 1805 ATTTGTTCAAAGAGGGTTGTTAAGAACCCAATCATAAAGTTTTTGGC 1851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5