BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479525
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20060.1 | Symbols: UBC19 | ubiquitin-conjugating enzyme19 |... 1254 0.0
AT1G50490.1 | Symbols: UBC20 | ubiquitin-conjugating enzyme 20 ... 614 5e-175
> AT3G20060.1 | Symbols: UBC19 | ubiquitin-conjugating enzyme19
| chr3:7002817-7004450 REVERSE LENGTH=823
Length=823
Score = 1254 bits (679), Expect = 0.0
Identities = 746/779 (96%), Gaps = 2/779 (0%)
Strand=Plus/Plus
Query 1 TCTCTATCTCTCTTCTCCTTCTTCTTCAATTTTGATCATTCTTGAATCTGATTCTCCTCG 60
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct 35 TCTCTATCTCTCTTCTCCTTCTTCTTCAGTTTCGATCATTCTTGAATCTGATTCTTCTCG 94
Query 61 A-TCAAAAGCATTTCAATTTCAGAAATTTCGACTACGATTGTTGGTTTGTTCAATTAGAA 119
| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 95 AGAAAAAAGCGTTTCAATTTCAGAAATTTCGACTACGATTGTTGCTTTGTTCAATTAGAA 154
Query 120 GAGGCGAAAAAGGATGGCGACGGTAAATGGGTACACAGGAAATACTCCGGCGGCGACTAC 179
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 155 GAGGCGAAAAAGGATGGCGACGGTTAATGGGTACACAGGGAATACTCCGGCGGCGACTAC 214
Query 180 GCCGGTAGCCACCGGATCAAAGCAACCTGCTCCTCCGACTAAGACCGTCGATAGTCAATC 239
|||| ||||||||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 215 ACCGGCAGCCACCGGATCAAAGCAATCTGCTCCTCCGACTAAGACCGTCGATAGCCACTC 274
Query 240 CGTCCTCAAAAGGCTGCAATCTGAACTGATGGGCTTGATGATGGGAGGTGATCCGGGGAT 299
||| || |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct 275 CGTTCTAAAAAGGCTGCAATCTGAACTAATGGGATTGATGATGGGAGCTGATCCGGGGAT 334
Query 300 ATCTGCTTTTCCAGAGGAAGACAACATATTTTGCTGGAAAGGAACAATCACAGGAAGCAA 359
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 335 ATCTGCGTTTCCAGAGGAAGACAACATATTTTGCTGGAAAGGAACAATTACAGGAAGCAA 394
Query 360 AGATACTGTGTTCGAAGGAACTGAGTACAGACTCTCACTCACTTTCTCAAACGATTATCC 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 395 AGATACTGTGTTCGAAGGAACTGAGTACAGACTCTCACTCACTTTCTCTAACGATTATCC 454
Query 420 TTTTAAATCTCCCAAAGTTAAGTTTGAGACATGCTGCTTCCACCCCAATGTGGATCTCTA 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TTTTAAGTCTCCCAAAGTTAAGTTTGAGACATGCTGCTTCCACCCCAATGTGGATCTCTA 514
Query 480 TGGCAACATTTGCTTGGACATTCTTCAGGATAAATGGTCATCTGCTTACGATGTGAGGAC 539
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 515 TGGCAATATTTGCTTGGACATTCTTCAGGATAAATGGTCATCTGCTTATGATGTGAGGAC 574
Query 540 GATATTACTCTCAATTCAGAGCCTTCTTGGAGAACCGAACATCAGCTCACCATTGAACAA 599
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 575 GATATTACTCTCAATTCAAAGCCTTCTCGGAGAACCGAACATCAGCTCACCATTGAACAA 634
Query 600 TCAAGCGGCTCAGCTTTGGAGCAATCAAGAAGAGTATAGGAAGATGGTTGAGAAGCTCTA 659
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 635 TCAAGCGGCTCAGCTTTGGAGCAATCAAGAAGAGTACAGGAAGATGGTTGAGAAGCTCTA 694
Query 660 CAAGCCTTTAAACGCATGATTCTCAAAAGCCACTGTAACTGATTT-AAAATCTCAACTGT 718
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 695 CAAGCCTTTAAACGCATGATTCTCAAAAATCACTGTAACTGATTTTAAAATCTCAACTGT 754
Query 719 ATTGGATCATGTCTCTTTTACTTTTATAATCTCAATTTGAGCCAATATTAGCAATCAAA 777
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 ATTGGATCATATCTCTTTTACTTTTATAATCTCAATTTGAGCCAATATTAGCAATCAAA 813
> AT1G50490.1 | Symbols: UBC20 | ubiquitin-conjugating enzyme 20
| chr1:18704805-18706478 REVERSE LENGTH=918
Length=918
Score = 614 bits (332), Expect = 5e-175
Identities = 571/683 (84%), Gaps = 30/683 (4%)
Strand=Plus/Plus
Query 10 CTCTTCTCCTTCTTCTTCAATTTTGATCATTCTTGAATCTGATTCTCCTCGA-TC-AA-- 65
||||||||||||||| | | ||| || || || ||||||||||||| ||| | || ||
Sbjct 56 CTCTTCTCCTTCTTC-T-ACTTTCGAACACTCGTGAATCTGATTCTACTCTAGTCTAATT 113
Query 66 --AAGCATTTCAATTTCAGAAATTTCGACTACGATTGTTGGTTTGTTCAATT-AGAAGAG 122
|| |||| ||||| | || | | | ||||| ||||| || | ||| |||| |
Sbjct 114 GGGTGC-TTTCGATTTCTG-AA-TAAAAATTCGATT-TTGGTCTG-ACGATTAAGAA-A- 166
Query 123 GCGAAAAAG-GATGG-CGACGGTAAATGGGTACACA-GGAAATACTCCGGCGGCGACTAC 179
||| |||| ||||| || | |||||||| || || |||||||||||||| || | |
Sbjct 167 GCG--AAAGTGATGGCCG-CCGTAAATGGATA-TCAGGGAAATACTCCGGC--AGA-TCC 219
Query 180 GCCGGTAG-CCACCGGATCAAAGCAACCTGCTCCTCCGACTAAGACCGTCGATAGTCAAT 238
|||| | | | |||||||| |||||||| ||||||| ||||| || || || ||||
Sbjct 220 TCCGG-CGTCTAATGGATCAAAACAACCTGCGGCTCCGACCAAGACTGTTGACAGCCAAT 278
Query 239 CCGTCCTCAAAAGGCTGCAATCTGAACTGATGGGCTTGATGATGGGAGGTGATCCGGGGA 298
| || |||||||| |||||||||||| ||||||||||||||||||| |||| ||| || |
Sbjct 279 CTGTTCTCAAAAGACTGCAATCTGAATTGATGGGCTTGATGATGGGCGGTGGTCCAGGAA 338
Query 299 TATCTGCTTTTCCAGAGGAAGACAACATATTTTGCTGGAAAGGAACAATCACAGGAAGCA 358
|||| ||||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 339 TATCGGCTTTCCCTGAGGAAGACAACATATTCTGCTGGAAAGGGACAATAACAGGAAGCA 398
Query 359 AAGATACTGTGTTCGAAGGAACTGAGTACAGACTCTCACTCACTTTCTCAAACGATTATC 418
||||||||||||| ||||||||||||||||||||||||||| ||||||| || || ||||
Sbjct 399 AAGATACTGTGTTTGAAGGAACTGAGTACAGACTCTCACTCTCTTTCTCCAATGACTATC 458
Query 419 CTTTTAAATCTCCCAAA-GTTAAGTTTGAGACATGCTGCTTCCACCCCAATGTGGATCTC 477
|||| || || ||||| ||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 459 CTTTCAAGCCT-CCAAAGGTTAAGTTTGAGACATGTTGCTTCCACCCCAATGTTGATGTC 517
Query 478 TATGGCAACATTTGCTTGGACATTCTTCAGGATAAATGGTCATCTGCTTACGATGTGAGG 537
|||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 518 TATGGCAATATCTGCTTAGACATTCTTCAGGATAAGTGGTCATCTGCTTACGATGTGAGG 577
Query 538 ACGATATTACTCTCAATTCAGAGCCTTCTTGGAGAACCGAACATCAGCTCACCATTGAAC 597
|||||| |||| || ||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 578 ACGATACTACTATCGATTCAGAGCCTCCTGGGAGAACCGAACATCAGTTCACCATTGAAC 637
Query 598 AATCAAGCGGCTCAGCTTTGGAGCAATCAAGAAGAGTATAGGAAGATGGTTGAGAAGCTC 657
| |||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 638 ACTCAAGCAGCTCAGCTTTGGAGTAACCAAGAAGAGTACAGGAAGATGGTTGAGAAGCTT 697
Query 658 TACAAGCCTTTAAACGCATGATT 680
||||||||| || ||||||||
Sbjct 698 TACAAGCCTCCAAGTGCATGATT 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5