BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479607
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20810.2 | Symbols: JMJD5 | 2-oxoglutarate (2OG) and Fe(II)-... 2361 0.0
> AT3G20810.2 | Symbols: JMJD5 | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:7275674-7278379
FORWARD LENGTH=1665
Length=1665
Score = 2361 bits (1278), Expect = 0.0
Identities = 1551/1674 (93%), Gaps = 54/1674 (3%)
Strand=Plus/Plus
Query 1 ATCACTTCCTAATATCTTTCTTTCCCTTTCCACTTTTTCGCTTACACTTTCCCCAA--C- 57
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATCACTTCAAAATATCTTTCTTTCCCTTTCCACTTTTTCGCTTACACTTTCCCCAACTCA 60
Query 58 TCATCACTCTAAAATATCTCCCACCACATACCACTTAA---GA--CGACCCGACCCGAAA 112
|||||||||||||||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 61 TCATCACTCTAAAATATCTCCCACCACATACCACTTAACCCGACCCGACCCGACCGGAAA 120
Query 113 ACCCGACCCGATCCATCCCAATGTCTGGAGCTTCCACCGCTTCCTCCGGTGACCACAACA 172
||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||
Sbjct 121 ACCCGACCCGATCCATCCCAATGTCAGGAGCTACCACCGCTTCCTCCGGAGACCACAACA 180
Query 173 ACGTCCGTCTCCCAACTCCGACGCTTGACGCCGAATTTCATTCTCTGCTGCAATCGATTT 232
|| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 181 ACCTCCGTCTCCCAACTCCGACGCTTGACGCCGAATCGCAAACTCTGCTGCAATCGATTT 240
Query 233 CTGCTCAAGGCGGTTACGCCTATGCTCGCATGGCGGCGTTAGCGGTGGCCGGTGACCAAA 292
||||| |||| |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 241 CTGCTGAAGGGGGTTACGCTTATGCTCGCATGGCGGTGTTAGCGGTGGCCGGTGACCAAA 300
Query 293 GTGCGGCGGAGGCGGCGCGTGATATGGCTTGGGAGCAACTTCACTCTGGTCCATGGCACT 352
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 GCGCGGCGGAGGCGGCGCGTGATATGGCTTGGGAGCAACTTCACTCTGGTCCGTGGCACT 360
Query 353 CAGTTCTCCCC-TTGTGGCGCGACGCTTACTCAATGGCTTGTCTCCTCGTCGCTAAAATT 411
| ||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 361 CGGTTCTCCCCGTT-TGGCGCGACGCTTACTCAATGGCTTGTCTCCACGTAGCTAAAATC 419
Query 412 CATTTCGCCGACGGCGAGTTTGGTGAAGCGCTTGGTGCGCTTGATATGGGGCTTATCATG 471
|||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 420 CATTTCGCCGCCGGCGAGTTTGGTGAGGCGCTTGGTGCGCTTGATATGGGTCTTATCATG 479
Query 472 GGAGGGATGCTTCTCCGCAAGGATCTTCATGATTCTGTTTTATTGGTCTCCTCCGAAGCT 531
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 480 GGAGGTATGCTTCTCCGCAAGGATCTTCATGATTCTGTTTTGTTGGTCTCCTCTGAAGCT 539
Query 532 CGTAAGAAGACAAAGAGTCTTGAAGAAGCTTCTGGAGAGTTCATGGGTGAGAAATTGGTC 591
||||||| ||| |||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct 540 CGTAAGATGACGAAGAGTCTTGAAGAAGCTTCTGGAGATTTCAAAGGTGAGAGATTGGTC 599
Query 592 CCGGAAGTTCCCGTTGACGTCAATGAGGTGAGACATGGTTTT-GCTAATCTACAAGTACT 650
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 600 CCGGAAGTTCCCGTCGACGTCAATGAGGTGAGACAT-GTTTTGGCTAATCTACAATTACT 658
Query 651 TGTGCTTAAGATTCTACCTTGCAGGTCCTTAACTTGTAGAAGAGTAGAGAAGAGGTCTGG 710
||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 659 TGTCCTTAAGATTCTACCTTGCAGGTCTTTAACTTGTAAAAGAGTAGAGAAGAGGTCTGG 718
Query 711 TTTATCTTTGGAGGGGTTTCTGCGTGATTATTTTCTGTCGGGTACACCAGTTGTTATAAC 770
|||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct 719 TTTATCTTTGGAGGGGTTTCTGCGTGATTATTATCTGCCAGGTACACCAGTTGTTATAAC 778
Query 771 CAATTCTATGGCTCATTGGCCAGCCAGGGCCAAGTGGAACCACTTGGACTACCTCAATGC 830
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 779 CAATTCTATGGCTCATTGGCCAGCCAGGACCAAGTGGAATCACTTGGACTACCTCAATGC 838
Query 831 TGTTGCTGGTAACCGCACCGTTCCCGTGGAGGTGGGGAAAAACTATTTGTGTTCTGATTG 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGTTGCTGGTAACCGCACCGTTCCCGTGGAGGTGGGGAAAAACTATTTGTGTTCTGATTG 898
Query 891 GAAGCAAGAGCTTGTGACATTTTCTAAGTTCCTTGAACGGATTCGGACCAATAAATCGTC 950
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 899 GAAGCAAGAGCTTGTGACATTTTCTAAGTTCCTTGAACGGATGCGGACCAATAAATCGTC 958
Query 951 TCCAATGGAGCCTACCTATCTTGCGCAGCATCCTTTGTTTGATCAGATAAATGAACTGAG 1010
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 959 TCCAATGGAGCCTACTTATCTTGCCCAGCATCCTTTGTTTGATCAGATAAATGAACTGAG 1018
Query 1011 AGATGATATATGTATACCTGATTACTGTTTTGTCGGTGGTGGGGAACTCCAATCACTTAA 1070
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGATGATATATGTATTCCTGATTACTGTTTTGTCGGTGGTGGGGAACTCCAATCACTTAA 1078
Query 1071 TGCGTGGTTTGGCCCGGCTGGGACAGTTACTCCGTTACACCATGATCCACATCATAATAT 1130
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TGCATGGTTTGGCCCGGCTGGGACAGTTACTCCGTTACACCATGATCCACATCATAATAT 1138
Query 1131 ACTTGCTCAGGTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTCCCTACAAGACGA 1190
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1139 ACTTGCTCAGGTTGTTGGCAAGAAGTATATAAGGCTTTACCCATCCTTCCTGCAAGACGA 1198
Query 1191 ACTTTACCCTTACTCTGAGACAATGCTCTGCAACTCTAGCCAGGTTGATCTAGACAATAT 1250
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1199 ACTTTACCCTTACTCTGAGACAATGCTCTGCAACTCTAGTCAGGTTGATCTAGACAATAT 1258
Query 1251 CGAC-AAGACCGAGTTCCCAAAGGCAACGGAGTTGGAGTTTATGGATTGTATTCTAGAAG 1309
|||| || ||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1259 CGACGAA-ACCGAGTTCCCAAAGGCCATGGAGTTGGAGTTTATGGATTGTATTCTAGAAG 1317
Query 1310 AAGGTGAAATGCTGTACATCCCTCCCAAATGGTGGCACTATGTCAGGTCCTTAACAATGA 1369
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AAGGTGAAATGTTGTACATCCCTCCCAAATGGTGGCACTATGTCAGGTCCTTAACAATGA 1377
Query 1370 GTTTCTCGGTTAGCTTCTGGTGGAGCAATGAAACAGATTCTTCTAGCTCATAGCGAAAGG 1429
|| ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||
Sbjct 1378 GTCTCTCGGTTAGCTTCTGGTGGAGCAATGAAGCAGAATCTTCTAGCTCGTAGCGAATGG 1437
Query 1430 AGTTACTATTAATCTC----T---G---T---TTCA-G--G-GTC--TGTGT---AAG-- 1465
| ||| | |||||||| | | | |||| | | ||| | ||| |||
Sbjct 1438 ATTTATTTTTAATCTCTGTTTCAGGTTCTAAGTTCACGTTGTGTCTTTATGTAAGAAGAA 1497
Query 1466 A--A-G-A-A-AAG-AAACAATTGCTCCGAGCATGAAGATGTTTGTTTGGTTTACGTCTA 1518
| | | | | ||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ACTATGTAGAGAAGAAAACAACTGCTCCGAGCATGAAGATGTTTGTTTGGTTTACGTCTA 1557
Query 1519 TGTTGTAAAAGACAATTGAGAGCTCTTTGGTACAGACATTTTTTAGGTATTTCATATTTG 1578
||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1558 TGTTGTAAAAGACAATTGAGAGCTCTT-GGTACAGACATTTTTTAGGTATTG-------G 1609
Query 1579 TAATGTTTGTCTTTGCTTCAAGTAAGAAAAAGGTTTAATCAAAAGCTACTCTTC 1632
||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||
Sbjct 1610 TAATGTTTGTCTTTGTTTCAAGTAAGAAAT-GGTTTAATCAAAATCTAATCTTC 1662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80622075270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5