BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479643
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21230.1 | Symbols: 4CL5 | 4-coumarate:CoA ligase 5 | chr3:7... 2868 0.0
> AT3G21230.1 | Symbols: 4CL5 | 4-coumarate:CoA ligase 5 | chr3:7448040-7452000
REVERSE LENGTH=1957
Length=1957
Score = 2868 bits (1553), Expect = 0.0
Identities = 1815/1941 (94%), Gaps = 20/1941 (1%)
Strand=Plus/Plus
Query 33 AGT-AAGAAGAATTAGAATATCCACACAAATGGTGCTCCAACAACAAACGCATTTTCTCA 91
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 25 AGTAAAGAAGAATTAGAATCTCCACACAAATGGTGCTCCAACAACAAACGCATTTTCTCA 84
Query 92 CAaagaagatagatcaagaagaagaagaagaagaaCCTTCTCATGATTTCATTTTCCGAT 151
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 85 CAAAGAAGATAGATCAAGAAGACGAAGAAGAAGAACCTTCTCATGATTTCATTTTCCGAT 144
Query 152 CTAAGCTTCCTGATATCTTCATCCCCAATCACCTCCCTCTCACCGATTACGTCTTCCACA 211
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 145 CTAAGCTTCCTGATATCTTCATCCCTAACCACCTCCCTCTCACCGATTACGTCTTCCA-A 203
Query 212 A-ATTCTCCGCCGATGGCGACGGCGATTCCTCCACCACTTGTATCATTGACGGTGCCACA 270
| ||||||| |||||||||||| |||||||| || || |||||||| |||||||||||
Sbjct 204 AGGTTCTCCGGCGATGGCGACGGAGATTCCTCAACAACCTGTATCATCGACGGTGCCACT 263
Query 271 GGCCGTATCTTAACCTACGCCGATGTACAAATCAACATGCAGAGGATTGCTGCCGGAATC 330
|||||||| || ||||||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct 264 GGCCGTATTTTGACCTACGCCGATGTACAAACCAACATGCGGAGGATAGCTGCCGGAATC 323
Query 331 CACCGGTTCGGGATCCGCCACGGTGACGTCGTAATGCTCCTTCTCCCGAACTCACCGGAG 390
|||||| |||||||||||||||| |||||||||||||| || ||||||||||| ||||||
Sbjct 324 CACCGGCTCGGGATCCGCCACGGAGACGTCGTAATGCTTCTCCTCCCGAACTCGCCGGAG 383
Query 391 TTTGCTTTATCTTTCCTCGCCGTGGCTTACCTTGGAGCTGTCTCCACCACCGCGAATCCG 450
|||||| | ||||| || ||||| |||||||||||||| || ||||| ||||||||||||
Sbjct 384 TTTGCTCTGTCTTTTCTTGCCGTTGCTTACCTTGGAGCCGTTTCCACTACCGCGAATCCG 443
Query 451 TTCTATACGCAGCCGGAAATAGCAAAACAAGCAAAAGCCTCCGCCGCGAAGATGATCATC 510
||||| || |||||||| || || ||||| || |||||||||||||||||||||||||||
Sbjct 444 TTCTACACTCAGCCGGAGATCGCTAAACAGGCTAAAGCCTCCGCCGCGAAGATGATCATC 503
Query 511 ACGAAGAAATGTTTAGTAGATAAGCTAACAATCCTTAAAAACGACGGCGTTTTAATCGTT 570
||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||| ||||||
Sbjct 504 ACGAAGAAATGTTTAGTCGATAAACTAACAAACCTCAAAAACGACGGCGTTTTGATCGTT 563
Query 571 TGTGTAGATGATGACGGTG---ACGGCGTTGTTTCGCCGACTGATGATGGTTGCGTGAGT 627
|| |||| |||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 564 TGCCTAGACGATGACGGTGACAACGGCGTTGTTTCGTCGAGTGATGATGGTTGCGTGAGT 623
Query 628 TTTACGGAACTGACTCAAGATGACGAAACAGAGCTTCCT-AAACCTGAGATCTCGCCGGA 686
|| |||||||||||||||| ||||||||||| ||| || |||||| | || ||||||||
Sbjct 624 TTCACGGAACTGACTCAAGCGGACGAAACAGAACTT-CTAAAACCTAAAATATCGCCGGA 682
Query 687 TGACACAGTGGCGATGCCGTACTCCTCCGGGACAACGGGACTGCCAAAGGGAGTGATGAT 746
||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 683 AGACACGGTGGCGATGCCGTACTCTTCCGGAACAACGGGACTTCCAAAGGGAGTGATGAT 742
Query 747 TACTCACAAGGGTTTGGTAACAAGCATCGCTCAGAAAGTCGACGGAGAAAACCCTAACC- 805
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 743 TACTCACAAGGGTTTAGTTACAAGCATCGCTCAGAAAGTCGACGGAGAAAACCCTAACCT 802
Query 806 TACACTTCACGGCCAGTGACGTCATCCTCTGTTTTCTCCCAATGTTTCACATTTACGCTC 865
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TA-ACTTCACGGCCAATGACGTCATCCTCTGTTTTCTCCCAATGTTTCACATTTACGCTC 861
Query 866 TCGACGCGTTAATGCTTTCGGCGATGAGAACCGGTGCGGCGTTACTGATCGTGCCTAGGT 925
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 862 TCGACGCGTTGATGCTTTCGGCGATGAGAACCGGTGCAGCGTTACTGATCGTGCCGAGGT 921
Query 926 TCGAGTTGAATCTGGTGATGGAGCTGATTCAAAGGTACAAAGTCACGGTGGTTCCGGTGG 985
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 922 TCGAGTTGAATCTGGTGATGGAGCTGATTCAAAGGTACAAAGTCACGGTTGTGCCGGTGG 981
Query 986 CTCCTCCGGTTGTTCTAGCATT-AGTTAAGTCCCCGGATACGGAGAGATACGACTTGAGC 1044
|||||||||| ||| ||||||| | |||| ||||| || |||||||||||||||||||||
Sbjct 982 CTCCTCCGGTGGTTTTAGCATTCA-TTAAATCCCCTGAGACGGAGAGATACGACTTGAGC 1040
Query 1045 TCGGTGAGAATGATGCTATCGGGTGCAGCTACATTAAAGAAGGAGCTTGAAGACGCCGTG 1104
||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1041 TCGGTGAGAATTATGCTATCAGGTGCAGCTACACTAAAGAAGGAGCTTGAAGACGCCGTG 1100
Query 1105 CGACTCAAGTTTCCTAATGCCATTTTTGGTCAGGGTTATGGTATGACCGAGTCCGGAACG 1164
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1101 CGACTCAAGTTTCCTAATGCCATTTTTGGTCAGGGTTATGGAATGACCGAGTCCGGAACG 1160
Query 1165 GTGGCTAAGTCATTAGCGTTTGCAAAGAACCCATTTAAAACCAAGTCCGGTGCGTGTGGG 1224
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1161 GTAGCTAAGTCATTAGCGTTTGCAAAGAACCCATTTAAAACCAAGTCCGGTGCATGTGGG 1220
Query 1225 ACTGTGATCAGAAACGCCGAGATGAAAGTGGTCGATACC-ATAACCGGAATATCCTTACC 1283
||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||
Sbjct 1221 ACTGTGATCAGAAACGCCGAGATGAAAGTGGTCGATACCGA-AACCGGAATCTCCTTGCC 1279
Query 1284 GCGCAACAAATCTGGCGAGATCTGCGTCCGAGGCCATCAGCTCATGAAAGGTTATTTGAA 1343
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1280 GCGCAACAAATCTGGCGAGATCTGCGTCCGAGGTCATCAGCTCATGAAAGGTTATTTGAA 1339
Query 1344 TGATCCAGAATCTACTGCGCGAACCATAGACAAAGACGGGTGGTTACACACAGGAGATAT 1403
|||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1340 TGATCCGGAAGCTACTGCACGAACCATAGACAAAGACGGGTGGTTACATACAGGAGATAT 1399
Query 1404 TGGGTTTGTGGATGATGATGATGAGATCTTCATTGTTGATCGGTTGAAGGAACTGATCAA 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 TGGGTTTGTGGATGATGATGATGAGATCTTCATTGTTGATCGGTTGAAGGAACTGATCAA 1459
Query 1464 ATTCAAAGGCTACCAAGTGGCTCCAGCTGAGCTTGAAGCATTGCTTATTTCTCATCCTTC 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 ATTCAAAGGCTACCAAGTGGCTCCAGCTGAGCTTGAAGCATTGCTTATTTCTCATCCTTC 1519
Query 1524 TATTGATGATGCCGCAGTTGTTGCAATGAAGGATGAAGTAGCTGATGAAGTTCCAGTAGC 1583
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1520 TATCGATGATGCCGCAGTTGTTGCAATGAAGGATGAAGTAGCTGATGAGGTTCCAGTAGC 1579
Query 1584 ATTTGTAGTAAGATCTGAAGGGTCTCAGTTAACTGAAGAAGATGTCAAGAGTTATGTAAA 1643
|||||||| ||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1580 ATTTGTAGCAAGATCTCAAGGGTCTCAGTTAACTGAAGATGATGTCAAGAGTTACGTAAA 1639
Query 1644 CAAACAGGTGGTTCACTACAAGCGGATCAAGATGGTGTTTTTCATAGAAGCTATACCGAA 1703
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||
Sbjct 1640 CAAACAGGTGGTTCACTACAAGCGGATTAAGATGGTGTTTTTCATAGAAGTTATACCAAA 1699
Query 1704 AGCAGTTTCGGGCAAGATTCTGAGGAAGGATCTCCGAGCTAAATTGGAAACCGA-GTGCT 1762
||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 1700 AGCAGTTTCGGGCAAGATTCTGAGGAAGGATCTGCGAGCTAAATTGGAAACC-ATGTGCT 1758
Query 1763 CTAAATAGACACAAGAGAGTTTCAATTGTATGTGTAAATTCGAACATTAAAGTCTCTAAG 1822
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1759 CTAAATAGACACAAGAGAGTTTCAAATGTATGTGTAAATTCGAACATTATAGTCTCTAAG 1818
Query 1823 AAGTAAGCAGTAAGAAGCAAGTTGTTTGGTATTTGATTTGGTTT-CAAGACATCAATCAT 1881
||||||| |||||||||||||| |||||||||||||||||||| || || |||||||||
Sbjct 1819 AAGTAAGGAGTAAGAAGCAAGTA-TTTGGTATTTGATTTGGTTTTCACGAGATCAATCAT 1877
Query 1882 GTAAATTCTACACATCTAGGAGACCTAAAGCTATA-CTACCCTCAGAAACATAAGTTCAT 1940
||||| || ||| |||||||| ||||||||||| | |||||||||||||||||| |||||
Sbjct 1878 GTAAAGTCAACAAATCTAGGAAACCTAAAGCTA-AGCTACCCTCAGAAACATAAATTCAT 1936
Query 1941 TTCCTATAATCATCATTTCAC 1961
|||||||||||||||||||||
Sbjct 1937 TTCCTATAATCATCATTTCAC 1957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97138054575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5