BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479655
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21350.2 | Symbols: MED6 | RNA polymerase transcriptional re... 828 0.0
> AT3G21350.2 | Symbols: MED6 | RNA polymerase transcriptional
regulation mediator-related | chr3:7517070-7518744 FORWARD LENGTH=1090
Length=1090
Score = 828 bits (448), Expect = 0.0
Identities = 512/543 (94%), Gaps = 4/543 (1%)
Strand=Plus/Plus
Query 1 GCTCTTCTCCTTCCCGGCGAAGCGAGTCACACTCTTCCATGGACTCCTCTCTACTCTCGG 60
||||||||||||| |||||||| || | || |||||||||| |||||||| |||||||
Sbjct 3 GCTCTTCTCCTTCACGGCGAAGTGA--CTCA--CTTCCATGGATTCCTCTCTGCTCTCGG 58
Query 61 CGGCTACGGCCGATACCTTCAACGGCAATGCGGCGGATCAGATTCCTCCTCCGTCGCAAC 120
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
Sbjct 59 CGGCTACGGCCGATACCTTCAACGGCAATGCGGCGGATCAAATTCCTCCTCCGTTACAGC 118
Query 121 CTCCGGGTACGGATATGACTGGAATATCCTTCAGGGATCAGCTCTGGATCAATTCATATC 180
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 119 CTCCGGGAACGGATATGACTGGAATTTCCTTCAGGGATCAGCTCTGGATCAATTCATACC 178
Query 181 CTCTTGATCGTAACTACATCTTCGATTACTTCGCTTTGTCTCCCTTCTACGATACAACCT 240
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 179 CTCTTGATCGTAACTACATCTTCGATTACTTCGCTTTGTCTCCTTTCTACGATACAACTT 238
Query 241 GCAACAATGAGATTCTTCGGAGAAGATCCATTCACCCTCTCGATCTCTCTCACCTCTCGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GCAACAATGAGATTCTTCGGAGAAGATCCATTCACCCTCTCGATCTCTCTCACCTCTCGA 298
Query 301 AGATGACAGGACTTGAGTATATGCTAACTGATGCTACTGAACCTAACCTGTTCGTCTTCC 360
|||||||||| || || |||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 299 AGATGACAGGTCTAGAATATATGTTAACTGATGCTACTGAACCAAACCTGTTCGTCTTTC 358
Query 361 GTAAGCAGAAGAGAGATGGTCCTGAGAAAGTCACACCCATGCTAACTTATTATATCTTGG 420
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 359 GTAAGCAAAAGAGAGATGGTCCTGAGAAAGTCACACCGATGCTAACATATTATATCTTGG 418
Query 421 ATGGTTCTATATACCAAGCTCCTCAGCTTTGTAGTGTCTTCGCAGCTCGTGTTAGTCGGA 480
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 419 ATGGTTCTATTTACCAAGCTCCTCAGCTTTGTAGTGTCTTCGCAGCTCGAGTTAGTCGGA 478
Query 481 CTATTTATAATATATCCAAGGCTTTCTCTGTTGCTGCATCGAAATTGGAGACCATTAGAC 540
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 479 CTATTTATAATATATCCAAGGCTTTCACTGATGCTGCATCGAAATTGGAGACCATTAGAC 538
Query 541 AAG 543
|||
Sbjct 539 AAG 541
Score = 604 bits (327), Expect = 4e-172
Identities = 379/404 (94%), Gaps = 4/404 (1%)
Strand=Plus/Plus
Query 544 TTGATACTGAAAACCAGAACGAACCCT-CTGAGTCGAAGCCTGCTAGTGAGACAGTTGAT 602
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 665 TTGATACTGAAAACCAGAACGAA-CCTGCTGAGTCGAAGCCTGCTAGTGAGACAGTTGAT 723
Query 603 CTAAAAGAAATGAAGCGAGTTGATGTCATTCTTACCTCGTTGTACCGCAAGTTAGCCCCA 662
||||| |||||||||||||| ||||||||||||||||| || || ||||||||||| |||
Sbjct 724 CTAAAGGAAATGAAGCGAGTCGATGTCATTCTTACCTCATTATATCGCAAGTTAGCGCCA 783
Query 663 GCACCTCCACCCCCTCCATTTCCTGAAGGTTATGTTAGCCAAGAAGCATTAGGAGAAAAG 722
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 CCACCTCCACCCCCACCCTTTCCTGAAGGTTATGTTAGCCAAGAAGCATTAGGAGAAAAG 843
Query 723 GAAGAGCTTGGAACACAGGGAGGAGAGTCACAACCGCCTCAAATTGATCCTATTATCGAT 782
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 844 GAAGAGCTTGGAACACAGGGAGGAGAGTCACAACCGCCTCAAGTTGATCCAATTATCGAT 903
Query 783 CAAGGTCCTGCTAAAAGAATGAAATTATAAGCTCATTAAGATTGTTT-T-CATCTATGCA 840
||||||||||||||||||||||| || ||||||||| || ||||||| | ||||||||||
Sbjct 904 CAAGGTCCTGCTAAAAGAATGAAGTTCTAAGCTCATCAAAATTGTTTCTTCATCTATGCA 963
Query 841 TGTATAGAATTTTTAGGTACTAGCAAAGGCTCTTCTACTTTTTCTCATCGTTTAATATGA 900
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 964 TGTATAGAATTTTTAGGTACTAGCAAAGGCTCTTCTACTTTTTCGCATTGTTTAATCTGA 1023
Query 901 ACTCGTTACACAATTGTTGACCTGATTACTTCTCATAAATTTTC 944
|||| |||||||||||||||| ||||||||||||||||| ||||
Sbjct 1024 ACTCCTTACACAATTGTTGACATGATTACTTCTCATAAAGTTTC 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46165181093
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5