BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479690 Length=1855 Score E Sequences producing significant alignments: (Bits) Value AT3G21690.1 | Symbols: | MATE efflux family protein | chr3:763... 2832 0.0 > AT3G21690.1 | Symbols: | MATE efflux family protein | chr3:7638663-7642205 FORWARD LENGTH=1952 Length=1952 Score = 2832 bits (1533), Expect = 0.0 Identities = 1723/1812 (95%), Gaps = 24/1812 (1%) Strand=Plus/Plus Query 1 ACATCCTCAAGCGATAACACcaac-aacaaaacaacaaacaaaaaaaaaaaaaaCagaga 59 ||||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||| Sbjct 1 ACATCCTCAAGCGATAACACC-ACAAACAAAACAACAAACCAAAAAAAAAAAAA-AGAGA 58 Query 60 gagagagagagCAAA--T-C-TC--CATCATGGACTCGTCTCAAAACGACGGCGTATACC 113 ||||||||||||||| | | || ||||||||||||||||| ||||||||||||| ||| Sbjct 59 GAGAGAGAGAGCAAATCTCCATCATCATCATGGACTCGTCTCCAAACGACGGCGTACACC 118 Query 114 AACCGCTTCTCCATCCTCAACCATCTCCACCTACGACGGAATCAAGCAACGGCGAGCTAG 173 ||||||||||||||||||||||||||||| || || |||| |||| |||||||||||||| Sbjct 119 AACCGCTTCTCCATCCTCAACCATCTCCATCTCCGCCGGAGTCAACCAACGGCGAGCTAG 178 Query 174 AAACCGTCCTCTCCGACGTCGAAACTCCTCTGTTTCTCCGCCTACGTAAAGCCACAATAA 233 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 179 AAACTGTCCTCTCCGACGTAGAAACTCCTCTGTTTCTCCGCCTACGTAAAGCCACCATAA 238 Query 234 TCGAATCAAAACTTCTCTTTAACCTCGCTGCACCAGCCGTCATCGTCTACATGATTAACT 293 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 TCGAATCAAAGCTTCTCTTTAACCTCGCTGCACCAGCCGTCATCGTCTACATGATTAACT 298 Query 294 ATCTCATGTCCATGTCCACTCAAATCTTCTCCGGCCATCTCGGTAACCTAGAACTCGCCG 353 | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 299 ACCTCATGTCCATGTCTACTCAAATCTTCTCCGGCCATCTCGGTAACCTCGAACTCGCCG 358 Query 354 CCGCTTCTCTTGGTAACACCGGTATCCAAGTCTTCGCTTATGGTCTCATGCTAGGCATGG 413 ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 359 CCGCTTCTCTTGGTAACACCGGTATTCAAGTCTTCGCTTACGGTCTCATGCTAGGCATGG 418 Query 414 GGAGTGCAGTGGAGACGTTATGTGGTCAAGCATACGGTGGTCGAAAATACGACATGCTTG 473 ||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| Sbjct 419 GGAGTGCAGTGGAGACGTTATGTGGTCAAGCGTACGGTGGTAGAAAATACGAGATGCTTG 478 Query 474 GAGTTTATCTCCAAAGATCAACCGTATTACTAACTCTCACCGGCCTCCTCCTTACCTTAA 533 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 479 GAGTTTATCTCCAAAGATCAACCGTATTACTAACACTCACCGGCCTCCTCCTTACTTTAA 538 Query 534 TCTACGTTTTCTCCGAACCATTCCTTCTCTTCCTCGGTGAATCTCCCGCAATCGCTTCCG 593 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct 539 TCTACGTTTTCTCCGAACCAATCCTTCTCTTCCTCGGTGAATCTCCCGCAATCGCTTCGG 598 Query 594 CTGCATCGCTCTTCGTATACGGTCTTATCCCTCAAATCTTTGCCTACGCAGCGAACTTTC 653 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CCGCATCGCTCTTCGTCTACGGTCTTATCCCTCAAATCTTTGCCTACGCAGCGAACTTTC 658 Query 654 CTATCCAAAAATTCCTCCAATCACAAAGCATAGTAGCTCCAAGTGCTTATATCTCAACGG 713 | || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 CAATACAAAAATTTCTCCAATCACAAAGCATAGTAGCTCCAAGTGCTTATATCTCAACGG 718 Query 714 CTACACTCTTTGTCCACCTTCTTTTAAGTTGGCTCGCGGTTTACAAGCTTGGTATGGGAC 773 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 CTACGCTCTTTGTTCACCTTCTTTTAAGTTGGCTCGCGGTTTACAAGCTTGGTATGGGAC 778 Query 774 TTCTTGGTGCGTCGCTTGTGCTTAGCTTGTCGTGGTGGATTATTGTTGTGGCTCAGTTTG 833 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 779 TTCTTGGTGCGTCGCTTGTGCTTAGCTTGTCGTGGTGGATTATAGTCGTGGCTCAGTTTG 838 Query 834 TTTATATTGTTACGAGTGAGAGGTGTCGTGAGACGTGGAGAGGTTTTAGTGTTCAAGCTT 893 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TTTATATTGTGACGAGTGAGAGGTGTCGTGAGACGTGGAGAGGTTTTAGTGTTCAAGCTT 898 Query 894 TCTCGGGTTTATGGAGTTTCTTTAAACTCTCTGCTGCCTCCGCCGTGATGCTTTGCCTTG 953 |||||||||| |||||||||||||||||||| || || || ||||||||||||||||||| Sbjct 899 TCTCGGGTTTGTGGAGTTTCTTTAAACTCTCCGCCGCTTCTGCCGTGATGCTTTGCCTTG 958 Query 954 AGACTTGGTATTTTCAGATTCTCGTTCTTCTCGCCGGACTTCTCGAGAATCCTGAACTTG 1013 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 959 AGACTTGGTATTTTCAGATTCTCGTTCTTCTTGCCGGACTTCTCGAGAATCCTGAACTTG 1018 Query 1014 CTCTTGATTCACTCTCTATTTGCATGACGATTTCAGGGTGGGTGTTCATGATATCTGTTG 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 CTCTTGATTCACTCTCTATTTGCATGACGATTTCAGGGTGGGTGTTCATGATATCTGTTG 1078 Query 1074 GATTCAATGCAGCGATAAGTGTAAGAGTGAGCAATGAACTTGGAGCTGGGAACCCTAAAT 1133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 GATTCAATGCAGCGATAAGTGTAAGAGTGAGCAATGAACTTGGAGCTGGGAACCCTAAAT 1138 Query 1134 CAGCAGCGTTTTCTGTAATCATCGTTAATATTTATTCGTTAATCACTTGTGTGATCCTAG 1193 ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1139 CAGCAGCTTTTTCTGTGATCATCGTTAACATTTATTCGTTAATCACTTGTGTGATCCTAG 1198 Query 1194 CCATTGTTATTTTGGCGTGCCGCGATGTTTTAAGCTATGCTTTCACTGAGGGTAAAGAAG 1253 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 CCATTGTTATTTTAGCGTGCCGCGATGTTTTAAGCTATGCTTTCACTGAGGGTAAAGAAG 1258 Query 1254 TCTCCGACGCTGTTTCTGATCTCTGTCCGCTTCTTGCTGTAACGCTTGTCCTTAACGGAA 1313 |||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1259 TCTCGGACGCTGTTTCTGATCTCTGTCCGCTTCTTGCCGTAACACTTGTCCTTAACGGAA 1318 Query 1314 TCCAACCTGTCCTCTCTGGTGTGGCGGTTGGATGCGGTTGGCAAACGTTTGTGGCGAAAG 1373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1319 TCCAACCTGTCCTCTCTGGTGTGGCGGTTGGATGCGGTTGGCAAACGTTTGTGGCGAAGG 1378 Query 1374 TTAACGTTGGATGTTACTACATTATTGGAATTCCTCTTGGAGCTCTCTTTGGGTTTTACT 1433 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1379 TTAACGTTGGATGTTACTACATTATTGGAATTCCTCTTGGGGCTCTCTTTGGGTTTTACT 1438 Query 1434 TCAACTTTGGTGCCAAGGGTATATGGACGGGGATGATCGGTGGTACGGTTATACAAACGT 1493 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 TTAACTTCGGTGCCAAGGGTATATGGACGGGGATGATCGGTGGTACGGTTATACAAACGT 1498 Query 1494 TTATTTTGGCGTGGGTCACGTTTAGAACAGATTGGACAAAAGAAGTGGAAGAAGCTTCCA 1553 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 TTATTTTGGCGTGGGTCACGTTTAGAACAGATTGGACAAAAGAAGTGGAAGAAGCTTCCA 1558 Query 1554 AAAGGTTGGACAAATGGAGCAACAAGAAACAAGAAGTTGTTCCTGAATGATCATGCAAGT 1613 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 1559 AAAGGTTGGACAAATGGAGCAACAAGAAACAAGAAGTTGTTCCTGAATGAT---GCAGGT 1615 Query 1614 CGATGGAAGTTTGGTATCCAATGAACCGATTAGATTTTCATCGGCTAA-CCGATGCAAAA 1672 |||| ||||||||||||||| |||||||||||||| |||||| ||| |||||||||| Sbjct 1616 TGATGAAAGTTTGGTATCCAAGGAACCGATTAGATT--CATCGG-TAAACCGATGCAAAT 1672 Query 1673 GCTCATATTA----GTGAGCTGGTAATAAAGGATATGGATCTACCTTTTAAACTTCTACA 1728 ||||| | || |||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1673 GCTCAAAGTAACATGTGAGCTGGTAAAAAAGGATATGGATCAACCTTTTAAACTTCTACA 1732 Query 1729 ACTCGATTTTAAGCTTTTTGTGTTCTTGTTTTAAA-GATTACACAGGTAGGTTATGTATA 1787 |||| |||||||| ||||||||||||||||| ||| | ||| | |||||||||||||| Sbjct 1733 ACTCAATTTTAAGTTTTTTGTGTTCTTGTTTAAAATG-TTAGA--GGTAGGTTATGTATT 1789 Query 1788 TTTGTATGCCAA 1799 |||||||||||| Sbjct 1790 TTTGTATGCCAA 1801 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91816796805 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5