BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479701
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21760.1 | Symbols: HYR1 | UDP-Glycosyltransferase superfami... 2224 0.0
AT3G21755.1 | Symbols: | other RNA | chr3:7666808-7668565 REVE... 2167 0.0
> AT3G21760.1 | Symbols: HYR1 | UDP-Glycosyltransferase superfamily
protein | chr3:7667027-7668724 FORWARD LENGTH=1698
Length=1698
Score = 2224 bits (1204), Expect = 0.0
Identities = 1388/1478 (94%), Gaps = 8/1478 (1%)
Strand=Plus/Plus
Query 22 ATATTTTGAAAAATGAAAATGGAGCTGGTGTTCATACCATCACCTGGTGACGGACATCTC 81
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATATTTTGAAAAATGAAACTGGAGCTGGTGTTCATACCATCACCTGGTGACGGACATCTC 120
Query 82 CGGCCATTAGTGGAGGTGGCTAAGCTTCTTGTCGACCGTGACGATCATCTCTCCATCACC 141
||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||||
Sbjct 121 CGGCCATTAGTGGAGGTAGCTAAGCTTCATGTTGACCGTGACGACCATCTCTCCATCACC 180
Query 142 ATCATCATCATCCCTCAGATGCATGGATTTAGTAGCGGTAACTCTTCCTCTTACATCGCT 201
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 181 ATCATCATCATCCCTCAGATGCATGGATTTAGTAGCAGTAACTCTTCTTCTTACATCGCT 240
Query 202 TCTCTCTCCTCTGCTTCTGTAGAACGTCTTCGCTACAACGTTCTCTCCGTAGCTGATAAA 261
||||||||||||| ||||| |||||||||| ||||||||||||||||||| ||||||||
Sbjct 241 TCTCTCTCCTCTGATTCTGAAGAACGTCTTAGCTACAACGTTCTCTCCGTCCCTGATAAA 300
Query 262 CCAGCCTCCGATGACTCCAAACCAAATTTCTTCGACTACATCGATGGCTTTAAGCCGCAG 321
|||| |||||||||| |||||||| |||| ||||||||||| ||| ||| |||||||||
Sbjct 301 CCAGACTCCGATGACACCAAACCACATTTTTTCGACTACATTGATAACTTCAAGCCGCAG 360
Query 322 GTAAAAGCCACGGTGGAAAAACTTACAGACCCGGCTCAACTAGAGTCCCCGCCGCGGCTT 381
|| ||||||||||||||||||||||| ||||||| || || ||| || ||| |||| |||
Sbjct 361 GTCAAAGCCACGGTGGAAAAACTTACTGACCCGGGTCCACCAGATTCGCCGTCGCGTCTT 420
Query 382 GCTGGATTCGTGGTGGATATGTTCTGCACGATGATGATTGATGTCGCCAACGAGTTTGGT 441
||||||||||||||||||||||| |||| |||||||||||||||||| || |||||||||
Sbjct 421 GCTGGATTCGTGGTGGATATGTTTTGCATGATGATGATTGATGTCGCTAATGAGTTTGGT 480
Query 442 GTTCCGAGTTACATGTTTTACACCTCCAACGCAACGTTTCTTGGATTGCAAGTTCATGTT 501
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTCCCAGTTACATGTTTTACACATCCAACGCAACGTTTCTTGGATTGCAAGTTCATGTT 540
Query 502 CAGTACCTTTACGACGTTAAGAACTATGACGTTAGTGACCTGAAGGACTCGGACATTACT 561
| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 541 GAATACCTTTACGACGTTAAGAACTATGACGTTAGTGACCTCAAGGACTCGGACACTACT 600
Query 562 GAGCTGGAAGTTCCCTGTTTGACTCGTCCTTTACCGGTTAAGTGTTTTCCCTCGGTTCTG 621
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 GAGCTGGAAGTTCCTTGTTTGACTCGTCCTTTACCGGTTAAGTGTTTCCCCTCGGTTCTA 660
Query 622 TTAGCCAAGGAGTGGTTACCGGTTATGTTTAGCCAAACCCGAAGATTCGGAGAAACTAAG 681
||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 661 TTAACCAAGGAGTGGTTACCGGTTATGTTTAGACAAACCAGAAGATTCCGAGAAACTAAA 720
Query 682 GGTATTTTGGTAAATACGTTCGCTGAGCTTGAGCCTCAAGCTATGAAGTTTTTCTCCGGC 741
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGTATTTTGGTAAATACATTCGCTGAGCTTGAGCCTCAAGCTATGAAGTTTTTCTCCGGC 780
Query 742 GTAGATAGTCCTCTTCCTACGGTGTACACAGTGGGACCGGTTATGAATCTTAAAATCAAC 801
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 GTAGATAGTCCTCTGCCTACGGTGTACACAGTTGGACCGGTTATGAATCTTAAAATCAAC 840
Query 802 GGTCC-AATATCATCTGACGATAAGCAATTGGAGATCCTGCGGTGGCTAGACGAGCAGCC 860
||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 841 GGTCCAAAT-TCATCTGACGATAAGCAATCGGAGATCCTACGGTGGCTAGACGAGCAGCC 899
Query 861 ACGTACATCCGTTGTGTTCCTCTGTTTCGGAAGCATGGGAGGTTTCCGTGAGGATCAAGC 920
||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 ACGTAAATCCGTTGTTTTCCTCTGTTTCGGAAGCATGGGAGGTTTCCGTGAGGGCCAAGC 959
Query 921 TAAAGAAATCGCAATCGCGCTAGAGCGAAGTGGTCACCGCTTTCTCTGGTCTCTTCGTCG 980
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 960 TAAAGAAATCGCAATCGCGCTTGAGCGAAGTGGTCACCGCTTTGTCTGGTCTCTTCGTCG 1019
Query 981 TGCTCAGCCAAAAGGAACGATGGGACCTCCCGGAGAATTTACGAATCTTGAGGAGATTCT 1040
|||||| ||||||||| |||| |||||||||| ||||||||||||||||||||| |||||
Sbjct 1020 TGCTCAACCAAAAGGATCGATAGGACCTCCCGAAGAATTTACGAATCTTGAGGAAATTCT 1079
Query 1041 CCCGGAGGGATTTTTAGAACGGACGGCAGAGATCGGTAAGATTATCGGTTGGGCTCCACA 1100
|||||| ||||| || ||||||||||||||||| || |||||| | ||||||||||||||
Sbjct 1080 CCCGGAAGGATTCTTGGAACGGACGGCAGAGATAGGAAAGATTGTAGGTTGGGCTCCACA 1139
Query 1101 AAGCGCCATTCTAGCAAATCCTGCGATCGGAGGATTTGTGTCACACTGTGGATGGAACTC 1160
||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||
Sbjct 1140 AAGCGCCATTCTAGCAAATCCTGCGATCGGAGGGTTCGTGTCGCATTGTGGATGGAACTC 1199
Query 1161 GACGCTAGAGAGTCTATGGTTCGGAGTTCCGATAGCCACGTGGCCGCTTTACGCAGAGCA 1220
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1200 GACGCTAGAGAGTCTATGGTTCGGAGTTCCGATGGCTACGTGGCCGCTTTACGCAGAGCA 1259
Query 1221 ACAAGTTAACGCGTTCGAGATGGTTGACGAGCTAGGGCTAGCGGTGGAGATCCGAAATAG 1280
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1260 ACAAGTTAACGCGTTCGAGATGGTTGAGGAGCTAGGGCTAGCGGTGGAGGTCCGAAATAG 1319
Query 1281 TTTCCAG-GGAGATTTCATGGCGGCGGACTCG--GAGTTGATGACGGCGGAGGAGATAGA 1337
||||| | |||||||||||||||||||| | | |||||||||||||| |||||||||||
Sbjct 1320 TTTCC-GAGGAGATTTCATGGCGGCGGA-T-GATGAGTTGATGACGGCAGAGGAGATAGA 1376
Query 1338 GAGAGGGATCCGGTGTTTGATGGAGCAGGATAGTGACGTGAGGAGTAGAGTGAAGGAGAT 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 GAGAGGGATCCGGTGTTTGATGGAGCAGGATAGTGACGTGAGGAGTAGAGTGAAGGAGAT 1436
Query 1398 GAGTGAGAAGAGTCACGTAGCTTTAATGGACGGTGGATCTTCGCACGTTGCTCTTCTAAA 1457
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 GAGCGAGAAGAGTCACGTAGCTTTAATGGACGGTGGATCTTCGCACGTTGCTCTTCTAAA 1496
Query 1458 GTTCATTCAAGACGTCACTAAGAATCTCTCTTGAATCT 1495
||| ||||||||||||||||||||| ||||||||||||
Sbjct 1497 GTTTATTCAAGACGTCACTAAGAATATCTCTTGAATCT 1534
> AT3G21755.1 | Symbols: | other RNA | chr3:7666808-7668565 REVERSE
LENGTH=1678
Length=1678
Score = 2167 bits (1173), Expect = 0.0
Identities = 1358/1448 (94%), Gaps = 9/1448 (1%)
Strand=Plus/Minus
Query 52 TTCATACCATCACCTGGTGACGGACATCTCCGGCCATTAGTGGAGGTGGCTAAGCTTCTT 111
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1448 TTCA-ACCATCACCTGGTGACGGACATCTCCGGCCATTAGTGGAGGTAGCTAAGCTTCAT 1390
Query 112 GTCGACCGTGACGATCATCTCTCCATCACCATCATCATCATCCCTCAGATGCATGGATTT 171
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 GTTGACCGTGACGACCATCTCTCCATCACCATCATCATCATCCCTCAGATGCATGGATTT 1330
Query 172 AGTAGCGGTAACTCTTCCTCTTACATCGCTTCTCTCTCCTCTGCTTCTGTAGAACGTCTT 231
|||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1329 AGTAGCAGTAACTCTTCTTCTTACATCGCTTCTCTCTCCTCTGATTCTGAAGAACGTCTT 1270
Query 232 CGCTACAACGTTCTCTCCGTAGCTGATAAACCAGCCTCCGATGACTCCAAACCAAATTTC 291
||||||||||||||||||| |||||||||||| |||||||||| |||||||| ||||
Sbjct 1269 AGCTACAACGTTCTCTCCGTCCCTGATAAACCAGACTCCGATGACACCAAACCACATTTT 1210
Query 292 TTCGACTACATCGATGGCTTTAAGCCGCAGGTAAAAGCCACGGTGGAAAAACTTACAGAC 351
||||||||||| ||| ||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 1209 TTCGACTACATTGATAACTTCAAGCCGCAGGTCAAAGCCACGGTGGAAAAACTTACTGAC 1150
Query 352 CCGGCTCAACTAGAGTCCCCGCCGCGGCTTGCTGGATTCGTGGTGGATATGTTCTGCACG 411
|||| || || ||| || ||| |||| |||||||||||||||||||||||||| |||| |
Sbjct 1149 CCGGGTCCACCAGATTCGCCGTCGCGTCTTGCTGGATTCGTGGTGGATATGTTTTGCATG 1090
Query 412 ATGATGATTGATGTCGCCAACGAGTTTGGTGTTCCGAGTTACATGTTTTACACCTCCAAC 471
||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1089 ATGATGATTGATGTCGCTAATGAGTTTGGTGTTCCCAGTTACATGTTTTACACATCCAAC 1030
Query 472 GCAACGTTTCTTGGATTGCAAGTTCATGTTCAGTACCTTTACGACGTTAAGAACTATGAC 531
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1029 GCAACGTTTCTTGGATTGCAAGTTCATGTTGAATACCTTTACGACGTTAAGAACTATGAC 970
Query 532 GTTAGTGACCTGAAGGACTCGGACATTACTGAGCTGGAAGTTCCCTGTTTGACTCGTCCT 591
||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 969 GTTAGTGACCTCAAGGACTCGGACACTACTGAGCTGGAAGTTCCTTGTTTGACTCGTCCT 910
Query 592 TTACCGGTTAAGTGTTTTCCCTCGGTTCTGTTAGCCAAGGAGTGGTTACCGGTTATGTTT 651
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 909 TTACCGGTTAAGTGTTTCCCCTCGGTTCTATTAACCAAGGAGTGGTTACCGGTTATGTTT 850
Query 652 AGCCAAACCCGAAGATTCGGAGAAACTAAGGGTATTTTGGTAAATACGTTCGCTGAGCTT 711
|| |||||| |||||||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct 849 AGACAAACCAGAAGATTCCGAGAAACTAAAGGTATTTTGGTAAATACATTCGCTGAGCTT 790
Query 712 GAGCCTCAAGCTATGAAGTTTTTCTCCGGCGTAGATAGTCCTCTTCCTACGGTGTACACA 771
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 789 GAGCCTCAAGCTATGAAGTTTTTCTCCGGCGTAGATAGTCCTCTGCCTACGGTGTACACA 730
Query 772 GTGGGACCGGTTATGAATCTTAAAATCAACGGTCC-AATATCATCTGACGATAAGCAATT 830
|| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 729 GTTGGACCGGTTATGAATCTTAAAATCAACGGTCCAAAT-TCATCTGACGATAAGCAATC 671
Query 831 GGAGATCCTGCGGTGGCTAGACGAGCAGCCACGTACATCCGTTGTGTTCCTCTGTTTCGG 890
||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 670 GGAGATCCTACGGTGGCTAGACGAGCAGCCACGTAAATCCGTTGTTTTCCTCTGTTTCGG 611
Query 891 AAGCATGGGAGGTTTCCGTGAGGATCAAGCTAAAGAAATCGCAATCGCGCTAGAGCGAAG 950
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 610 AAGCATGGGAGGTTTCCGTGAGGGCCAAGCTAAAGAAATCGCAATCGCGCTTGAGCGAAG 551
Query 951 TGGTCACCGCTTTCTCTGGTCTCTTCGTCGTGCTCAGCCAAAAGGAACGATGGGACCTCC 1010
||||||||||||| |||||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 550 TGGTCACCGCTTTGTCTGGTCTCTTCGTCGTGCTCAACCAAAAGGATCGATAGGACCTCC 491
Query 1011 CGGAGAATTTACGAATCTTGAGGAGATTCTCCCGGAGGGATTTTTAGAACGGACGGCAGA 1070
|| ||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 490 CGAAGAATTTACGAATCTTGAGGAAATTCTCCCGGAAGGATTCTTGGAACGGACGGCAGA 431
Query 1071 GATCGGTAAGATTATCGGTTGGGCTCCACAAAGCGCCATTCTAGCAAATCCTGCGATCGG 1130
||| || |||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GATAGGAAAGATTGTAGGTTGGGCTCCACAAAGCGCCATTCTAGCAAATCCTGCGATCGG 371
Query 1131 AGGATTTGTGTCACACTGTGGATGGAACTCGACGCTAGAGAGTCTATGGTTCGGAGTTCC 1190
||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AGGGTTCGTGTCGCATTGTGGATGGAACTCGACGCTAGAGAGTCTATGGTTCGGAGTTCC 311
Query 1191 GATAGCCACGTGGCCGCTTTACGCAGAGCAACAAGTTAACGCGTTCGAGATGGTTGACGA 1250
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 310 GATGGCTACGTGGCCGCTTTACGCAGAGCAACAAGTTAACGCGTTCGAGATGGTTGAGGA 251
Query 1251 GCTAGGGCTAGCGGTGGAGATCCGAAATAGTTTCCAG-GGAGATTTCATGGCGGCGGACT 1309
||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |
Sbjct 250 GCTAGGGCTAGCGGTGGAGGTCCGAAATAGTTTCC-GAGGAGATTTCATGGCGGCGGA-T 193
Query 1310 CG--GAGTTGATGACGGCGGAGGAGATAGAGAGAGGGATCCGGTGTTTGATGGAGCAGGA 1367
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 192 -GATGAGTTGATGACGGCAGAGGAGATAGAGAGAGGGATCCGGTGTTTGATGGAGCAGGA 134
Query 1368 TAGTGACGTGAGGAGTAGAGTGAAGGAGATGAGTGAGAAGAGTCACGTAGCTTTAATGGA 1427
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 133 TAGTGACGTGAGGAGTAGAGTGAAGGAGATGAGCGAGAAGAGTCACGTAGCTTTAATGGA 74
Query 1428 CGGTGGATCTTCGCACGTTGCTCTTCTAAAGTTCATTCAAGACGTCACTAAGAATCTCTC 1487
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 73 CGGTGGATCTTCGCACGTTGCTCTTCTAAAGTTTATTCAAGACGTCACTAAGAATATCTC 14
Query 1488 TTGAATCT 1495
||||||||
Sbjct 13 TTGAATCT 6
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73744600605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5