BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479706 Length=1282 Score E Sequences producing significant alignments: (Bits) Value AT3G21865.1 | Symbols: PEX22 | peroxin 22 | chr3:7701025-770338... 1908 0.0 > AT3G21865.1 | Symbols: PEX22 | peroxin 22 | chr3:7701025-7703385 REVERSE LENGTH=1302 Length=1302 Score = 1908 bits (1033), Expect = 0.0 Identities = 1193/1267 (94%), Gaps = 24/1267 (2%) Strand=Plus/Plus Query 24 CAGGGA-G-GGCTCGAGAACAGTG-CCAATATCCGAAAGCTGAAGCTAAGAATCTGAAAG 80 |||||| | ||||||||||||||| || ||||| ||||||||||||||||||||| | Sbjct 52 CAGGGAGGAGGCTCGAGAACAGTGCCCCATATCTGAAAGCTGAAGCTAAGAATCT----G 107 Query 81 TTCGAGTCTTTCGTGATTAAAACGACGACGTATTTGAATTTCGCTTTGAAGGAAAGGTGA 140 || | |||||| ||||| |||||||||||||||| || |||||||||||||||||| Sbjct 108 ---GA--CGTTCGTGTTTAAACCGACGACGTATTTGAAATTGGCTTTGAAGGAAAGGTGA 162 Query 141 AATTAATGGCGGAATCGTCGTCGCCGTCGCCTACTGAAGAGATCGTTCGGTTGATTAAGC 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 AATTAATGGCGGAATCGTCGTCGCCGTCGCCTACTGAAGAGATCGTTCGGTTGATTAAGC 222 Query 201 GTTTAAGCGCTTACGTTGCTTTCAAAATGTCAAGCCTTTTCTCTACTTCATCGATTCGCA 260 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | Sbjct 223 GTTTAAGCGCTTACGTTGCTTTCAAAATGTCAAGCCTTTTCTCCACTACATCGATTCGAA 282 Query 261 ATCTGGATTCAAGATCAATTGGTGCGATTGCGGGGCTTGCGATTGCGGTGATTTTTACGT 320 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 283 ATCTGGATTCAAGATCAATTGGTGCGATTGCGGGGCTTGCGATTGCGGTGATATTTACGT 342 Query 321 GGAGGGCGATAAGAACGCCGGGGGAGCAACGTCAAAGAAGGCAGCCGAAGCGTAGGATTA 380 ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct 343 GGAGGGCGATAAGAACGCCCGGAGAGCAACGTCAGAGAAGGCAGCCGAAGCGTAGGATTC 402 Query 381 ACAATGCTGAAACGTCTAGtgctgctgctgctgctgctCAGTCGAATGTAGCTTC---GG 437 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || Sbjct 403 ACAATGCTGAAACGTCTAGTGCTGCTGCTGCTGCTTCTCAGTCGAATCTAGCTTCTTCGG 462 Query 438 T-GCTTCCTGAAGTTTCTTCGCCTCGTGAGGATAACGCGGTGCAAGATGTTGTTGATCAG 496 | ||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 463 TTGCT-CCGGAAGTTTCTTCGCCTCGTGAGGATAATGCGGTGCAAGATGTTGTTGATCAG 521 Query 497 TTCTTTCAACCTGTTAAACCTACATTGGGGCAAATAGTTAGGCAGAAGCTTAGTGAAGGA 556 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 522 TTCTTTCAACCTGTTAAACCTACTTTGGGGCAAATAGTTAGACAGAAGCTTAGTGAAGGA 581 Query 557 AGGAAGGTAACATGCCGTCTTCTTGGAGTAATTCTTGAGGAAACAAGTCCAGAAGAACTC 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 582 AGGAAGGTAACATGCCGTCTTCTTGGAGTAATTCTTGAGGAAACAAGTCCAGAAGAACTC 641 Query 617 CAAAAACAAGCAACAGTGAGGTCATCTGTTTTGGAAGTTCTCCTAGAGATTACAAAGTAT 676 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 642 CAAAAACAAGCCACAGTGAGGTCATCTGTTTTGGAAGTTCTACTAGAGATTACAAAGTAT 701 Query 677 AGTGATTTATATCTCATGGAAAGAGTTCTTGACGATGAAAGCGAAGCCAAAGTTCTACAG 736 |||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 702 AGTGATTTGTATCTTATGGAAAGAGTTCTTGACGATGAAAGCGAGGCCAAAGTTTTACAG 761 Query 737 GCTTTAGAGAATGCAGGAGTTTTCACATCTGGTGGTTTGGTCAAAGATAAGGTCCTCTTT 796 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct 762 GCTTTAGAGAATGCAGGAGTTTTTACATCTGGTGGTTTAGTCAAAGATAAGGTGCTCTTT 821 Query 797 TGTAGTACAGAGATAGGAAGAACTTCCTTTGTCAGACAACTAGAACCTGACTGGCATATC 856 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 822 TGTAGTACAGAGATAGGAAGAACTTCCTTTGTCAGACAGCTAGAACCTGACTGGCATATT 881 Query 857 GATACAAACCCGGAAATCAGCACACAACTAGCTAGGTTCATCAAATACCAGCTTCACGTC 916 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 882 GATACAAACCCGGAAATCAGCACACAACTAGCTAGGTTCATCAAATATCAGCTTCATGTC 941 Query 917 GCTACGGTGAAACCCGAGCGAACGGCTCCAAATGTGTTCACCTCGCAGTCAATAGAACAG 976 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 942 GCTACGGTGAAACCCGAGCGAACAGCTCCAAATGTGTTCACCTCGCAGTCAATAGAACAG 1001 Query 977 TTCTTTGGAAGTGTTTAATGTCAACAAAAAA-GAGAGGTGAAAGATACTACGTTGTCCTG 1035 ||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| Sbjct 1002 TTCTTTGGAAGTGTTTAATATCAACAAAAAAAGAGAGGTGAAAGATATTACGTTGTCCTG 1061 Query 1036 ATTTAAGCATCATTGATCGAGTGTCTCTTAGGCTGAAACTTGAAACTTGtttttcatttt 1095 | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1062 ACTTAAGCATCGTTGATCGAGTGTCTCTTAGGCTGAAACTTGAAACTTGTTTTTCATTTT 1121 Query 1096 tcttttATTGTGTCTAAATTAAAGTTTGATATACACTTTGGAGTTAGATATATTATTACT 1155 ||||| ||||||||||||||||||||||||||||| ||||||||||||||| | | || Sbjct 1122 TCTTTGATTGTGTCTAAATTAAAGTTTGATATACA-TTTGGAGTTAGATAT-T-A---CT 1175 Query 1156 GCGAGTGCCAATGTGAAAGTATCCAAGTTTGTAATTTTTGTATTAGCAACTTAGCACAAG 1215 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1176 GCGAGTGCCTCTGTGAAAGTATCCAAGTTTGTAATTTTTGTATTAGCAACTTAGCAAAAT 1235 Query 1216 TCTTAAAGAAATAAACAAATGTCCTTTATTTAGTCATTAATTCATCGACAAAGTGTGGAA 1275 |||| ||||||||||||||||||| || ||||||||||| ||||||||| ||||||||| Sbjct 1236 TCTTTAAGAAATAAACAAATGTCCGTTGTTTAGTCATTAGTTCATCGACGAAGTGTGGAT 1295 Query 1276 TAGTTCT 1282 ||||||| Sbjct 1296 TAGTTCT 1302 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63051884520 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5