BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479720
Length=896
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22060.1 | Symbols: | Receptor-like protein kinase-related ... 1195 0.0
> AT3G22060.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr3:7771016-7772340 FORWARD LENGTH=1011
Length=1011
Score = 1195 bits (647), Expect = 0.0
Identities = 746/795 (94%), Gaps = 2/795 (0%)
Strand=Plus/Plus
Query 1 CCACAAAATATCAATTTT-TTCCCAAAACAATGTCTTCATCAAAACGCATCGTTTGGTTC 59
|||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct 21 CCACAAAATATCAATTTTCTT-CCAAAACAATGTCTTCATTAAAACGCATCGTTTGGTTC 79
Query 60 CCTATCTTGATCGTAGCCATACAAATTCTCTCTATACATACCGTTTTGTCCCAAAGCCAG 119
||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 80 CCTATCTTGGCCATAGCCATACAAATTCTCTCTATACATACCGTTTTGTCTCAAAGCCAG 139
Query 120 AACAATGCGTTTCTCTTCCACAAGTGCTCAGACATTGAAGGAAGCTTCACTTCGAAAAGT 179
||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||
Sbjct 140 AACAATGCGTTTCTCTTCCACAAGTGCTCAGACATCGAAGGAAGCTTTACCTCAAAAAGT 199
Query 180 CCCTACGAGTCAAATCTTAACAATCTCTTTCCTCAGCTCTCTTACAAAGTTCCATCCACC 239
| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 200 CTCTACGAGTCAAATCTCAACAATCTCTTTAGTCAGCTCTCTTACAAAGTTCCATCCACC 259
Query 240 GGTTTTGCCACCTCCTCCGCTGGTATCACTCCAGACAACGTCAACGGTTTGGCCCTTTGC 299
||||||||| |||||||| |||| | ||||||| ||||||||||||||||||||||||||
Sbjct 260 GGTTTTGCCGCCTCCTCCACTGGCAACACTCCAAACAACGTCAACGGTTTGGCCCTTTGC 319
Query 300 CGCGGTGATGCCTCTTCCTCTGATTGCAGCTCCTGTCTTGCCACCGCCATCCCTGAGATA 359
|||||||||||||| |||||||| ||| |||| ||||||| || |||||||| ||| ||
Sbjct 320 CGCGGTGATGCCTCCTCCTCTGACTGCCGCTCTTGTCTTGAGACTGCCATCCCCGAGCTA 379
Query 360 CGTCAGAGATGTCCGAGCAACAAGGCGGGAATAATATGGTATGACAACTGTCTTGTCAAG 419
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||
Sbjct 380 CGTCAGAGATGTCCGAACAACAAGGCGGGAATAGTATGGTATGACAACTGTCTTGTAAAG 439
Query 420 TATTCCTCGACCAATTTCTTCGGGAAGATCGATTTCGAGAACAGGTTCTATTTGTACAAC 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 440 TATTCCTCGACCAATTTCTTCGGGAAGATAGATTTCGAGAACAGGTTCTATTTGTACAAC 499
Query 480 GTCAACAATGTGAGCGATCCATCGACGTTCAACACGCAGACGAAGGCTCTTTTAACCGAG 539
||||| |||||||| |||||||| || |||||| |||||||||| |||||||||||||||
Sbjct 500 GTCAAAAATGTGAGTGATCCATCAACATTCAACTCGCAGACGAAAGCTCTTTTAACCGAG 559
Query 540 CTGACAAAGAAAGCGACTACTAGAGATAACCAGAAGCTGTTTGCGACAGGAGAGAAGAAT 599
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 560 CTGACAAAGAAAGCGACTACTAGAGATAACCAGAAGCTATTTGCGACAGGAGAGAAAAAT 619
Query 600 ATCGGGAAGAAGAAATTGTACGGACTAGTGCAGTGTACGAGGGACTTGAAGAGTGTGGCT 659
||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 620 ATCGGAAAGAATAAATTGTACGGACTAGTGCAATGTACGAGGGACTTGAAGAGTATTACT 679
Query 660 TGTAAGGCATGTTTAAATGGAATTATTGGGGAGCTTCCTAACTGTTGCGACGGTAAAGAA 719
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 TGTAAGGCGTGTTTAAATGGAATTATTGGGGAGCTTCCTAACTGTTGCGACGGTAAAGAA 739
Query 720 GGAGGGAGAGTTGTGGGTGGGAGCTGTAACTTTAGGTATGAGATTTACCCTTTTGTTAAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 GGAGGGAGAGTTGTGGGTGGGAGCTGTAACTTTAGGTATGAGATTTACCCTTTTGTTAAG 799
Query 780 GCTGCTTGATTAGAG 794
||||||||||||||
Sbjct 800 ACTGCTTGATTAGAG 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43753942037
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5