BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479740
Length=3277
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22270.1 | Symbols: | Topoisomerase II-associated protein P... 5210 0.0
AT4G14990.1 | Symbols: | Topoisomerase II-associated protein P... 1735 0.0
> AT3G22270.1 | Symbols: | Topoisomerase II-associated protein
PAT1 | chr3:7874145-7878468 FORWARD LENGTH=3295
Length=3295
Score = 5210 bits (2821), Expect = 0.0
Identities = 3155/3310 (95%), Gaps = 48/3310 (1%)
Strand=Plus/Plus
Query 1 ATGTTACACACGGCGAAGGAAACAGAACAAGAAAAAATAAAGGCCATTGC--T-TTCTT- 56
|||||||||||||| |||||||||||||||||| |||||||||||||||| | |||||
Sbjct 1 ATGTTACACACGGCCAAGGAAACAGAACAAGAACAAATAAAGGCCATTGCTTTCTTCTTC 60
Query 57 -CTT--CCTTCTCTTCATTACCCTTCTCGCTCTCTcttttttgtcgcggagagag-ttt- 111
||| ||||||||||||| ||||||| ||||||||||||| |||||||||||| |||
Sbjct 61 CCTTCCCCTTCTCTTCATTGCCCTTCT--CTCTCTCTTTTTTATCGCGGAGAGAGTTTTA 118
Query 112 taga-tt-tccttgttcaacttttacttgcgttt-tttgtttttATCAATTGGAAAACCC 168
|||| || ||||| |||||| ||||||||||||| |||| ||||||||||| ||||||||
Sbjct 119 TAGATTTCTCCTTCTTCAAC-TTTACTTGCGTTTCTTTG-TTTTATCAATTCGAAAACCC 176
Query 169 TAGCAGCAATCTCTGCTGATTTCACTTACCCACCTCAAATTTT-ATCTCTCTGTCTCCTT 227
|||||||||||||||||||||||||||||||||||| |||||| | | ||| |||||||
Sbjct 177 TAGCAGCAATCTCTGCTGATTTCACTTACCCACCTCGAATTTTGTTGT-TCTATCTCCTT 235
Query 228 CACAAAGTACCACCTATCTGAAACCCTAGGGAAAGAGGA-T-TCTCTTATGTCCTCTTCT 285
||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 236 CACAAAGCACCACCTATCTGAAACCCTAGGGGAAGAGGATTCTCTCTTATGTCCTCTTCT 295
Query 286 GTCATCTTCTCTTACCTCTAAAGTTTCGTTT-TTTCGATCATGGAGAGATCTGATTCAAG 344
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 296 GTTATCTTCTCTTACCTCTAAAGTTTCGTTTATTTCGATCATGGAGAGATCTGATTCAAG 355
Query 345 GGATTTGTATAACTTTGTGCGTGCTTCTTCCTTAGATAAAAACAGTACACTCTTCGATGC 404
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 356 GGATTTGTATAACTTTGTTCGCGCTTCTTCCTTAGATAAAAACAGTACACTCTTTGATGC 415
Query 405 ATCACAATATGAGTTTTTTGGTCAGAATCTGGATGATATGGAAATTGGAGGTCTTGACGA 464
||||||||||||||||||||| || |||||||||||||||||| |||| |||||||| ||
Sbjct 416 ATCACAATATGAGTTTTTTGGACAAAATCTGGATGATATGGAACTTGGGGGTCTTGATGA 475
Query 465 TGATGGAGTGATCGCTCCTGTTCTTGGACATGCTGATGATGATGAGTATCACTTGTTTGA 524
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TGATGGAGTAATCGCTCCTGTTCTTGGACATGCTGATGATGATGAGTATCACTTGTTTGA 535
Query 525 TAAAGGAGAGGGAGCAGGTTTAGGATCACTATCTGACATGGATGATCTTGCGACAACTTT 584
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TAAAGGAGAGGGTGCAGGTTTAGGATCACTATCTGACATGGATGATCTTGCGACAACTTT 595
Query 585 CGCAAAGTTAAACAGAGTTGTTACCGGACCCAAACACCCTGGAGTTATTGGTGACAGAGG 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 596 CGCAAAGTTAAACAGAGTTGTTACCGGACCCAAACACCCTGGAGTTATTGGTGATAGAGG 655
Query 645 ATCAGGATCCTTTTCAAGAGAGAGTTCTTCTGCTACCGATTGGACACATGATGCAGAGCT 704
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 656 ATCAGGATCCTTTTCAAGAGAGAGTTCTTCTGCTACCGATTGGACACAAGATGCAGAGCT 715
Query 705 CACAAGCTGGTTGGACGAACAAGATCAAGAAGCTAAGAGGTGGTCCTCACAGCCACAATC 764
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 716 CACAAGCTGGTTGGACGAACAAGATCAAGAAGCTAAGAGATGGTCCTCACAGCCACAATC 775
Query 765 ATTTGTTCATTCAAAACCTTTGTACAGGACATCCTCCTATCCTCAGCAGCAACCGCAGCT 824
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 776 ATTTGCTCATTCAAAACCTTTGTACAGGACATCCTCTTATCCTCAGCAGCAACCGCAGCT 835
Query 825 GCAGCACTACAATAGTGAACCGATAATTTTACCAGAATCAAATTTTACCTCATTTCCCCC 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GCAGCACTACAATAGTGAACCGATAATTTTACCAGAATCAAATTTTACCTCATTTCCCCC 895
Query 885 GTCTGGTAGCAGATCTCCACAGGCGTCACCCGGAAATCTCCATCGTGCTCCTTCTCTTCC 944
| |||||| ||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 896 GCCTGGTAACAGATCTCCGCAGGCTTCACCCGGAAATCTCCATCGCGCTCCTTCTCTTCC 955
Query 945 TGGTGGTTCTCAGTTGACCTATTCTGCACCTTCCCCACTGTCAAATTCTGGTTTTCATCT 1004
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 956 TGGTGGTTCTCAGTTGACCTATTCTGCACCTTCCCCGCTGTCAAATTCTGGTTTTCATCT 1015
Query 1005 TTCAGGATTGTCGCAAGGGCCCCACTATGGTAGTAATTTGGCTAGATATGCCTCGTGCGG 1064
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1016 TTCAGGATTGTCGCAAGGGCCCCACTATGGTGGTAATTTGACTAGATATGCCTCGTGCGG 1075
Query 1065 TCCTACGCTTGGTAACATGGTGCAACCTCATTGGGTTACTGATCCTGGTCTTCTACACGG 1124
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1076 TCCTACGCTTGGTAACATGGTGCAACCTCATTGGGTCACTGATCCTGGTCATCTACACGG 1135
Query 1125 AGATCATTCTGGTTTATTACATAATCTGGTGCAACAACAGCAGCAACAATTGCCTCCTCG 1184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1136 AGATCATTCTGGTTTATTACATAATCTGGTGCAACAACAGCATCAACAATTGCCTCCTCG 1195
Query 1185 AAATGCCATTATGTCGCAACATTTGCTCGCCCTCCAGCAGAGACAATCGTATGCTCAGCT 1244
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 1196 AAATGCTATTATGTCGCAACATTTGCTTGCCCTCCAGCAGAGACAATCATATGCTCAACT 1255
Query 1245 TGCGGCGCTACAGTCCCAACTGTATAGTTCCTATCCTTCGCCATCACGTAAAGTCCCTTT 1304
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGCAGCGCTACAGTCTCAACTGTATAGTTCCTATCCTTCGCCATCACGTAAAGTCCCTTT 1315
Query 1305 TGGAGTTGGTGAAGTTAGGGAACACAAACATAAGTCATCTCATAGAAGTCGAAAGAACAG 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1316 TGGAGTTGGTGAAGTTAGGGAACACAAACATAAGTCATCTCATAGAAGTCGAAAGAATAG 1375
Query 1365 AGGCCTCTCTCAACAGGCATCAGACGCAGCTAGTCAGAAAAGTGAAAGTGGACTGCAGTT 1424
||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1376 AGGACTCTCTCAACAGACATCAGACGCAGCTAGTCAGAAAAGTGAAACTGGACTGCAGTT 1435
Query 1425 TAGATCAAAGCACATGACTTCAGAAGAAATAGAGGGTATACTCAAGATGCAGCATTCCAA 1484
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1436 TAGATCAAAGCACATGACTTCAGAAGAAATAGAGAGTATACTCAAGATGCAGCATTCCAA 1495
Query 1485 TTCACACAGCAATGATCCCTATGTCAATGATTATTACCACCAAGCTAAGCTTGCCAAGAA 1544
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1496 TTCACACAGCAATGATCCCTATGTCAATGATTATTACCACCAAGCGAAGCTTGCCAAGAA 1555
Query 1545 GTCTGCCGGATCTAAAGCAATCTCTCACTTCTATCCTGCTCAGTTGAAGGACCACCAGCC 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GTCTGCCGGATCTAAAGCAATCTCTCACTTCTATCCTGCTCAGTTGAAGGACCACCAGCC 1615
Query 1605 TCGGTCCCGTAATAGTTCTGAACAGCATCCACAAGTTCATGTAGATGCTCTTGGTAAGAT 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1616 TCGGTCCCGTAATAGTTCTGAACAGCATCCACAAGTTCATGTAGATGCTCTTGGTAAAAT 1675
Query 1665 TACACTTCCTTCTGTCCGCAGGCCACATGCCTTGCTTGAGGTTGACTCTTCTCCTGGTTT 1724
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TACACTTCCATCTGTCCGCAGGCCACATGCCTTGCTTGAGGTTGACTCTTCTCCTGGTTT 1735
Query 1725 AAACGATGGAAGCGGGGATCATAAAGGCTCAGGAAAACATTTGGAACAGGAACCTCTCGT 1784
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1736 TAACGATGGAAGCGGGGATCATAAGGGCTCAGGAAAACATTTGGAACAGGAACCTCTCGT 1795
Query 1785 TGCAGCTAGGGTTACAATTGAAGATGCTCTTGGAGTTCTTATTGACATAGTTGACATTGA 1844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 TGCAGCTAGGGTTACAATTGAAGATGCTCTTGGAGTTCTTATTGACATAGTTGACATTGA 1855
Query 1845 CAGGACTCTCCAAAATACAAGACCCCAGGACGGAGGTGCCCAACTCAAGAGAAAGCGGCA 1904
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 CAGGACTCTCCAAAACACAAGACCCCAGGACGGAGGTGCCCAACTCAAGAGAAAGCGGCA 1915
Query 1905 AATCCTGCTAGAAGGATTAGCGACAGCACTTCAACTTGCTGATCCGTTCAGCAAAACCGG 1964
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 GATCCTGCTAGAAGGATTAGCGACAGCACTTCAACTTGCTGATCCGTTCAGCAAAACCGG 1975
Query 1965 TCAGAAATCCGGGATGACTGCTAAGGATGATATTGTCTTTCTACGTATAGCGACTCTCCC 2024
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 TCAGAAATCTGGGATGACTGCTAAGGATGATATTGTCTTTCTACGTATAGCGACTCTCCC 2035
Query 2025 CAAGGGTCGGAAATTGCTTACAAAGTATCTACAACTTCTAGTTCCAGGTACTGAGATTGC 2084
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2036 CAAGGGTCGGAAATTGCTTACAAAGTATCTACAACTTCTAGTTCCAGGTACTGAGAATGC 2095
Query 2085 TCGAGTTGTCTGTATGGCTATATTCCGCCACTTGAGATTTCTGTTTGGCGGCCTGCCTTC 2144
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 2096 TCGAGTTGTCTGTATGGCTATATTCCGCCACTTGAGATTTCTGTTCGGCGGCCTACCTTC 2155
Query 2145 AGATACTCTAGCAGCAGAGACGATATCTAATCTTGCCAAAGCAGTCACGGTTTGCGTTCA 2204
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2156 AGATACTCTAGCAGCAGAGACAATATCTAATCTTGCCAAAGCAGTCACGGTTTGCGTTCA 2215
Query 2205 AGCCATGGACCTTCGAGCACTGAGTGCTTGCCTCGCAGCTGTAGTTTGTTCTTCAGAGCA 2264
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2216 GGCCATGGACCTTCGAGCACTGAGTGCTTGCCTTGCAGCTGTAGTATGTTCTTCAGAGCA 2275
Query 2265 GCCACCTCTGCGTCCTATTGGAAGTTCTGCTGGGGATGGTGCTTCAGTTGTGTTGATATC 2324
||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2276 GCCACCTCTCCGTCCTATCGGAAGTTCTGCTGGAGATGGTGCTTCAGTTGTCTTGATATC 2335
Query 2325 TCTTCTTGAGAGAGCTGCTGAAGTAGTGGTGGTTCCACGAGTCATGCATGGGAATTCTAA 2384
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2336 TCTTCTTGAGAGAGCTGCGGAAGTAGTGGTGGTTCCTCGAGTCATGCATGGGAATTCTAA 2395
Query 2385 TGATGGTCTCTGGAGAGCCTCATTTGATGAATTCTTCAACCTTCTTACCAAATACTGCAG 2444
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2396 TGATGGTCTCTGGAGAGCGTCATTTGATGAATTCTTCAACCTTCTTACCAAATACTGCAG 2455
Query 2445 AAGCAAGTATGAGACAATCCGCGGTCAGAACCAAGGGAGTGCAGCGGATGTTTTGGAGCT 2504
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2456 AAGCAAGTATGACACAATCCGTGGACAGAACCAAGGGAGTGCAGCGGATGTTTTGGAGCT 2515
Query 2505 GGCGATAAAGAGGGAAATGCCCGCTGAGCTTTTACGGGTGAGTCTGCGTCACACCAATGA 2564
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 2516 GGCGATAAAGAGGGAAATGCCCGCTGAGCTTTTACGTGCGAGTCTGCGTCACACCAATGA 2575
Query 2565 CGACCAGAGGAACTATTTATTAAACTTTGGTCGTAAACCGTCGGCAATTAGTGAGTCGGC 2624
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2576 CGACCAGAGGAACTATTTATTAAACTTTGGTCGTAAACCATCAGCAATTAGTGAGTCGGC 2635
Query 2625 GTCTCATGCAAGGGGTGGACAGATCAACTCCGAATCTGTGAGAGGTTAATAAAGAAA-AA 2683
||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||
Sbjct 2636 ATCTCATGCAAGGGGTGGACAGATCAACTCTGAATCTGTGAGGGGTTAATAAA-AAAGAA 2694
Query 2684 AGAGAAACCATGGGCTTGGAAGATTCCAGTTCTTGGTTTTC-TGGGCTGTGGTGTGGACT 2742
|||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||||||||
Sbjct 2695 AGAGAAACCATGTGCTTGGAAGATTCCAATTCTTGGTTTTCATGG-CTGTGGTGTGGACT 2753
Query 2743 CAGGAGACAAACTTGTAAGTAACCTGGTGGTGTAGGAATCTTTTCACAAGGGTTTCAGGT 2802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2754 CAGGAGACAAACTTGTAAGTAACCTGGTGGTGTAGGAATCTTTTCACAAGGGTTTCAGGT 2813
Query 2803 GAAAAGTGCTTTTAGATTCTGCTCGtcttcttcttcttttcttaactttgaactctttta 2862
|||||||||||||||||||||||| || ||||| | |||| | |||||||||||||||||
Sbjct 2814 GAAAAGTGCTTTTAGATTCTGCTCTTCGTCTTCGT-TTTT-T-AACTTTGAACTCTTTTA 2870
Query 2863 tatttcgtatt-tccttttatGGTGGACAAATGCAAATTCTGCTTGGTTTGTGTATTTGA 2921
||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2871 TATTTCGTATTATC-TTTTATGGTGGACAAATGCATATTCTGCTTGGTTTGTGTATTGGA 2929
Query 2922 TGATGGGAAAGAATGTGAAACATGGAGTAGTAGG-TTATCGGAAGAAGCAATGTCTTCCG 2980
|||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 2930 TGATGGGAAAGAATGTGAAACATGGAGTAGTAGGGTTATCTGAAGAAGTAATGTCTTCCG 2989
Query 2981 A-GAGAGCCATATTTTGGTGCTCTAA-TCGTTAGGGAAACAAAAAATAGGAGGGAATTTT 3038
| | |||||||||||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct 2990 ATGGGAGCCATATTTTGGTGCTCTAAATCGTTAGGGAAACAAAAA-TAGGAGGGAACTTT 3048
Query 3039 AGTGGTTTGGGAAGGATACTAGTGTTTTGTGTACAGAATGCTGATAAAACCCTTTATCCG 3098
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3049 AGTAGTTTGGGAAGGATACTAGTGTTTTGTGTACAGAATGATGATAAAACCCTTTATCCG 3108
Query 3099 GAGAATAGTGAGAAGGCGATA--GGTGCTAATCATCTTCGATTAACAGGTTTAGAGGTCT 3156
||||||||||||||| | ||| |||| ||||| |||||||||||||||||||| | ||
Sbjct 3109 GAGAATAGTGAGAAGACTATATAGGTGTTAATCCTCTTCGATTAACAGGTTTAG-G-TCC 3166
Query 3157 GGAAA--AGCAG-----CTGGGATAGGGAGTTAAAAAGTTTGTTATCTGATATGTTTATT 3209
||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 3167 GGAAAGCAGCTGGGAATCTGGGATAGGGAGTTCAAAAGTTTGTTATCTGATATGTTTATT 3226
Query 3210 TCCTCTGAGAACTCTTTCGTGTAATAGTTA-TAGGAACTCACAAAA-CCCTCTTTTAAAT 3267
|||||| ||||| |||||||||||||| | ||||||||||||||| ||||||||| |||
Sbjct 3227 TCCTCTTTGAACTGTTTCGTGTAATAGT-AGTAGGAACTCACAAAAACCCTCTTTTGAAT 3285
Query 3268 TCTCTTGGAT 3277
|||||||||
Sbjct 3286 ACTCTTGGAT 3295
> AT4G14990.1 | Symbols: | Topoisomerase II-associated protein
PAT1 | chr4:8565622-8569814 REVERSE LENGTH=3304
Length=3304
Score = 1735 bits (939), Expect = 0.0
Identities = 1962/2437 (81%), Gaps = 146/2437 (6%)
Strand=Plus/Plus
Query 317 TTTCGATCATGGAGAGATCTGATTCAAGGGATTTGTATAACTTTG-TGCGTGCTTCTTCC 375
||| ||||||||||||||||||||| || ||||| || ||||| | | | |||||| |
Sbjct 297 TTT-GATCATGGAGAGATCTGATTCTAGAGATTTCTACAACTTCGCTAAG-ACTTCTT-C 353
Query 376 TTAGATAAAAACAGTACACTCTTCGATGCATCACAATATGAGTTTTTTGGTCAGAA-TCT 434
| ||||| || ||| ||||||| || ||||| ||||||||||| |||||||| || |||
Sbjct 354 -T-GATAACAATAGTGCACTCTTTGACGCATCTCAATATGAGTTCTTTGGTCA-AAGTCT 410
Query 435 GGATGATA-TGGAAATT-GGAGGTCTTGACGATGATGGAGTGATCGCTCCTGTTCTTGGA 492
|| || | | | |||| || |||||| |||||| || || | | |||||| ||||
Sbjct 411 TGAAGA-AGTCG-AATTGGGTGGTCTT---GATGAT-GA-TG---G-TACTGTTCGTGGA 459
Query 493 CATGCTGATGATGATGAGTATCACTTGTTTGATAAAGGAGAGGGAGCAGGTTTAGGATCA 552
|||| ||||||||| ||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 460 CATGTTGATGATGAAGAGTATCACTTGTTTGATAAAAGAGAGGGTGCTGGTTTAGGATCA 519
Query 553 CTATCTGACATGGATGATCTTGCGACAACTTTCGCAAAGTTAAACAGAGTTGTTACCGGA 612
|||||||||||||||||||||| |||||||| |||||| | |||||| |||||||||
Sbjct 520 TTATCTGACATGGATGATCTTGCCACAACTTTTGCAAAGCTGAACAGAAATGTTACCGGG 579
Query 613 CCCAAACACCCTGGAGTTATTGGTGACAGAGGATCAGGATCCTTTTCAAGAGAGAGTTCT 672
|||||||||| |||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 580 CCCAAACACCTTGGAGTAATTGGTGACAGAGGATCAGGGTCCTTTTCAAGAGAAAGTTCT 639
Query 673 TCTGCTACCGATTGGACACATGATGCA-GAGCTCACAAGCTGGTTGGA-C-GAACA-AGA 728
||||||| |||||||| || ||| | ||| |||||||||||||||| | | ||| ||
Sbjct 640 ACTGCTACAGATTGGACTCAGGAT-AATGAGTTCACAAGCTGGTTGGATCAGCACACAGT 698
Query 729 TCAAG---AAG--C--TAAG--AGGTGGTCCTCACAGCCACAATCATTTGTTCATTCAAA 779
| ||| ||| | ||| || ||||| |||||||||||||||| | | |||||||
Sbjct 699 TGAAGAACAAGTTCAGGAAGCTAGTTGGTCTTCACAGCCACAATCATCTCCTAATTCAAA 758
Query 780 ACCTTTGTACAGGACATCCTCCTATCCTCAGCAGCAACCGCAGCTGCAGCACTACAATAG 839
|| |||| ||||||||||| ||||||||||||||| | ||||| || || |||| |||
Sbjct 759 TTCTCTGTATAGGACATCCTCATATCCTCAGCAGCAAACACAGCTACAACATTACAGTAG 818
Query 840 TGAACCGATAATTTTACCAGAATCAAATTTTACCTCATTTCCCCCGTCTGGTAGCAGATC 899
|||||||| || |||||||||| | ||||| || ||||| || |||| | |||||
Sbjct 819 CGAACCGATTATCGTACCAGAATCGACGTTTACATCTTTTCCTTCGCCTGGAAAAAGATC 878
Query 900 TCCACAGGCGTCACCCG-GAAATCTCCATCGTGCTCCTTCTCTTCCTGGTGGTTCTCAGT 958
|| |||| | || |||| | || | ||||||||||||||||||||||||||| |||||
Sbjct 879 TCAACAGTCTTC-CCCGAGCCATATTCATCGTGCTCCTTCTCTTCCTGGTGGTAGTCAGT 937
Query 959 TGACCTATT---CTGC--AC-CTTCCCCACTGTCAAATTCTGGTTTTCATCTTTCAGGAT 1012
|| || || || | || | || || |||| |||||| ||| ||||| || ||||
Sbjct 938 CGAACTTTTCAGCTCCAAACGCCTCTCCGTTGTCGAATTCTACTTTCCATCTCTCGGGAT 997
Query 1013 TGTCGCAAGGGCC--C-CACTATGGTAGTAATTTGGCTAGATATGCCTCGTGCGGTCCTA 1069
|||| || || || | || ||||||| ||||||||||||||||||||| || |||||||
Sbjct 998 TGTCACATGGACCGTCGCATTATGGTAATAATTTGGCTAGATATGCCTCATGTGGTCCTA 1057
Query 1070 CGCTTGGTAACATGGTG---CAA---CCTCATTGGGTTACTGATCCTGGTCTTCTACACG 1123
| ||||||||||||||| ||| |||||||||||||| || || || ||||| ||||
Sbjct 1058 CTCTTGGTAACATGGTGCAACAACCTCCTCATTGGGTTACCGACCCCGGCCTTCTCCACG 1117
Query 1124 GAGATCATTCTG-GTTTATTACATAATCTGGTGC-A-A-CAACAGCAGCAACAATTGCCT 1179
| |||||||| | | || ||||| | ||| ||| | | ||||| | |||||| |||||
Sbjct 1118 GTGATCATTCCGCG-TTGTTACACAGTCTAATGCAACAGCAACATCTCCAACAACTGCCT 1176
Query 1180 CCTCGAAATGCCATTA-TGTCGCAACATTTGCTCGCCCTCCAGCAGAGACAATCGTAT-G 1237
||||| |||| ||| | || ||||| ||| | | || |||||||||||||| | | |
Sbjct 1177 CCTCGGAATGGTTTTACT-TCACAACAGTTGATATCTCTTCAGCAGAGACAATC-TTTAG 1234
Query 1238 CTCAGCTTGCGGCGCTACAGTCCCAACTGTATAGTTCCTATCCTTCGCCATCACGTAAAG 1297
|||| ||||| || |||| || || || |||||||| |||||||| ||||||| |||||
Sbjct 1235 CTCATCTTGCTGCATTACAATCTCAGCTATATAGTTCTTATCCTTCTCCATCACATAAAG 1294
Query 1298 TCCCTTTT-GGAGTTGGTGAAGTTAGGGAACACAAACATAAGTCATCTCATAGAAGTCGA 1356
| ||||| || ||||||||||| |||||||||||||||||||| |||||| ||||||||
Sbjct 1295 -CTCTTTTCGGGGTTGGTGAAGTAAGGGAACACAAACATAAGTCGTCTCATCGAAGTCGA 1353
Query 1357 AAGAACAGA---GGCCTCTCTCAACAGGCATCAGACGCAGCTAGTCAGAAAAGTGAAAGT 1413
||||||||| || ||||||||||| ||||||| |||||| |||||||| |||||
Sbjct 1354 AAGAACAGAGGTGGTATCTCTCAACAGACATCAGATTTAGCTAGCCAGAAAAGCGAAAGC 1413
Query 1414 GGACTGCAGTTTAGATCAAAGCACATGACTTCAGAAGAAATAGAGGGTATACTCAAGATG 1473
||| ||||||||||||||||| |||||||||||||||| |||||| |||| |||||||||
Sbjct 1414 GGATTGCAGTTTAGATCAAAGTACATGACTTCAGAAGAGATAGAGAGTATTCTCAAGATG 1473
Query 1474 CAGCATTCCAATTCACACAGCAATGATCCC-TATGTCAATGATTATTACCACCAAGCTAA 1532
|||||||| ||||||||||| | ||| ||| |||||||||||||||||||||||||||
Sbjct 1474 CAGCATTCTAATTCACACAGTAGTGA-CCCTTATGTCAATGATTATTACCACCAAGCTCG 1532
Query 1533 GCTTGCCAAGAAGTC-TGCCGGATCTAA-AGC-AATCTCTCACTTCTATCCTGCTCAGTT 1589
|||||| || ||||| | ||||||| || | | || | |||| || |||||| |||| ||
Sbjct 1533 GCTTGCGAAAAAGTCAT-CCGGATC-AAGAACAAAGC-CTCAGTTGTATCCTTCTCATTT 1589
Query 1590 GAAGGACCACCAGCCTCGGTCCCGTAATAGTTCTGAACAGCATCCACAAGTTCATGTAGA 1649
|||||| ||||| ||||||| || ||||||||||| ||||| |||||||||||||| ||
Sbjct 1590 GAAGGATCACCAATCTCGGTCGCGGAATAGTTCTGATCAGCAACCACAAGTTCATGTTGA 1649
Query 1650 TGCTCTTGGTAAGATTACACTTCCTTCTGTCCGCAGGCCAC-ATGCCT-TGCTTGAGGTT 1707
||||||||| |||||||||||||||||| | |||| |||| | | || | || ||||||
Sbjct 1650 TGCTCTTGGAAAGATTACACTTCCTTCTATTTGCAGACCACGA-G-CTCTACTCGAGGTT 1707
Query 1708 GACTCTTCTCCTGGTTTAAACGATGGAAGCGGGGATCATAAAGGCTCAGGAAAACAT-TT 1766
|| | ||||| | | | ||| || | || ||| || ||| ||
Sbjct 1708 GA--C-TCTCC-----T---C-CT---AGC-----TC-T---GG-TCA--TAAGCATCTT 1740
Query 1767 GGAACAGGAACCTCTCGTTGCAGCTAGGGTTACAATTGAAGATGCTCTT-GGAGTTCTTA 1825
||| | || ||||| ||||||||||| || ||||||||||||||| || ||||||||||
Sbjct 1741 -GAAGATGAGCCTCTTGTTGCAGCTAGAGTCACAATTGAAGATGCT-TTCGGAGTTCTTA 1798
Query 1826 TTGACATAGTTGACATTGACAGGACTCTCCAAAATACAA--GACCCCAGGACGGAGGTGC 1883
| || |||||||||||||| |||||||| | ||| ||| | || || ||||| |||||
Sbjct 1799 TCGATATAGTTGACATTGATAGGACTCTTC--AATTCAACCGGCCACAAGACGGTGGTGC 1856
Query 1884 CCAACTCAAGAGAAAGCGGCAAATCCTGCTAGAAGGATTAGCGACAGCACTTCAACTTGC 1943
|| |||| |||||| ||||| ||||| || ||||||||||| || ||||||||||||
Sbjct 1857 ACAGCTCAGGAGAAAACGGCAGATCCTTCTTGAAGGATTAGCAACTTCACTTCAACTTGT 1916
Query 1944 TGATCCGTTCAGCAAAACCGGTCAGAAATCCGGGA-TGACTGCTAAGGATGATATTGTCT 2002
|||||| || |||||||| ||||||||| || ||| |||| | ||||||||||| || |
Sbjct 1917 TGATCCTTTTAGCAAAACTGGTCAGAAAACC-GGATTGACCACAAAGGATGATATCGTGT 1975
Query 2003 TTCTACGTATAGCGACTCTCCCCAAGGGTCGGAAATTGCTTACAAAGTATCTACAACTTC 2062
|||| || ||| ||||||| || ||||||||||||||||| |||||||||||||| ||||
Sbjct 1976 TTCTCCGCATAACGACTCTTCCTAAGGGTCGGAAATTGCTGACAAAGTATCTACAGCTTC 2035
Query 2063 TAGTTCCAGGTACTGAGATTGCTCGAGTTGTCTGTATGGCTATATTCCGCCACTTGAGAT 2122
| ||||| ||||||||||| || || ||||||||||||||| ||||||||||| |||| |
Sbjct 2036 TTGTTCCGGGTACTGAGATCGCGCGGGTTGTCTGTATGGCTGTATTCCGCCACCTGAGGT 2095
Query 2123 TTCTGTTTGGCGGCCTGCCTTCAGATA-CTCTAGCAGCAGAGACGATATCTAATCTTGCC 2181
|||| || || ||||| || ||||||| | || ||||||||||||||| ||||||||||
Sbjct 2096 TTCTATTCGGTGGCCTACCGTCAGATAGC-CTTGCAGCAGAGACGATAGCTAATCTTGCT 2154
Query 2182 AAAGCAGTCACGGTTTGCGTTCAAGCCATGGACCTTCGAGCACTGAGTGCTTGCCTCGCA 2241
|||||||| |||||||| |||||||| |||||||| |||||| |||||||||| || |||
Sbjct 2155 AAAGCAGTTACGGTTTGTGTTCAAGCAATGGACCTCCGAGCATTGAGTGCTTGTCTTGCA 2214
Query 2242 GCTGTAGTTTGTTCTTCAGAGCAGCCACCTCTGCGTCCTATTGGAAGTTCTGCTGGGGAT 2301
||||| ||||| || ||||| ||||||||||| ||||| || ||||||||| | |||||
Sbjct 2215 GCTGTTGTTTGCTCGTCAGAACAGCCACCTCTCCGTCCAATAGGAAGTTCTTCCGGGGAC 2274
Query 2302 GGTGCTTCAGTTGTGTTGATATCTCTTCTTGAGAGAGCTGCTGAAGTA---GTGG---TG 2355
|| || || ||||| ||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 2275 GGAGCATCGGTTGTCTTGGTATCTCTTCTTGAGAGAGCTGCTGAAGTAATAGTGGCGGTG 2334
Query 2356 GTTCCAC-GAGT--CATGCAT----GGGAATTCTAATGATGGTCTCTGGAGAGCCTCATT 2408
||||||| | || || ||| |||||| | |||||||| |||||||||||||| ||
Sbjct 2335 GTTCCACCGCGTGTCA-GCAACCACGGGAATCCGAATGATGGACTCTGGAGAGCCTCGTT 2393
Query 2409 TGATGAATTCTTCAAC-CTTCTTACCAAATACTGCAGAAGCAAGTATGAGACAATCCGCG 2467
|||||| |||||| | |||||||| ||||| ||||| |||||||| |||||||||| |
Sbjct 2394 TGATGAGTTCTTCT-CTCTTCTTACTAAATATTGCAGGAGCAAGTACGAGACAATCCATG 2452
Query 2468 GTCAGAACCAAGGGAGTGCAGCGGATGTTTTGGAGCTGGCGATAAAGAGGGAAATGCCCG 2527
|||||||||| | | |||||| ||||| |||||| | || ||||||||||||||||| |
Sbjct 2453 GTCAGAACCACGACAATGCAGCTGATGTGTTGGAGTTAGCTATAAAGAGGGAAATGCCTG 2512
Query 2528 CTGAGCTTTTACGGGTGAGTCTGCGTCACACCAATGACGACCAGAGGAACTAT-TTA-TT 2585
| ||||||||||| | |||||| ||||| || ||||| |||||| |||||| | ||| ||
Sbjct 2513 CCGAGCTTTTACGTGCGAGTCTTCGTCATACTAATGAAGACCAGCGGAACT-TCTTACTT 2571
Query 2586 AAACTTTGGTCGTAAACCGTCGGCAATTAGTGAGTCGGCGTC------T-CA--TGCAAG 2636
|| | ||||||||| | ||| || |||| |||||| | | | || ||||||
Sbjct 2572 AA-CGTTGGTCGTAGTGCATCGCCAGTTAGCGAGTCGACAACAACCCGTGCAAGTGCAAG 2630
Query 2637 GGGTGGACAGATCAACTCCGAATCTGTGAGAGGTTAA 2673
||||| ||||| ||||| |||| |||||| ||||||
Sbjct 2631 TGGTGGTCAGATTAACTCTGAATTTGTGAGGGGTTAA 2667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 163042564750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5