BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479749
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22370.1 | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A ... 1871 0.0
AT3G27620.1 | Symbols: AOX1C | alternative oxidase 1C | chr3:10... 767 0.0
> AT3G22370.1 | Symbols: AOX1A, ATAOX1A | alternative oxidase 1A
| chr3:7906791-7908740 FORWARD LENGTH=1488
Length=1488
Score = 1871 bits (1013), Expect = 0.0
Identities = 1145/1209 (95%), Gaps = 8/1209 (1%)
Strand=Plus/Plus
Query 41 GATTTGAAACAATGATGATGACTCGCGGTGGAGCCAAGGCGGCGAAATCGCTGTTAGCGG 100
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 89 GATTTGAAACAATGATGATAACTCGCGGTGGAGCCAAGGCGGCGAAATCGCTGTTAGTGG 148
Query 101 CGGCTAGACCACGTTTGTTCTCGACGATCCGTACGATTTCGTCTCACGAAGCGTTATCAG 160
||||| |||||||||||||||||||| |||||||| ||||||||||||| || |||||||
Sbjct 149 CGGCTGGACCACGTTTGTTCTCGACGGTCCGTACGGTTTCGTCTCACGAGGCTTTATCAG 208
Query 161 CAAGCCATCTCTTGAAGCCTGAG-GTTGCATCGGCTTGGATCTGGACTAGAGCTCCGACG 219
|||||||| | |||||||||| | ||| |||| |||||||| ||||||||||||||||||
Sbjct 209 CAAGCCATATTTTGAAGCCTG-GTGTTACATCTGCTTGGATATGGACTAGAGCTCCGACG 267
Query 220 ATTGGAGGTATGAGATTCGCTAGCACGATTACTTTAGGAGAGAAAACTCCGACGAAGGAA 279
||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||
Sbjct 268 ATTGGAGGTATGAGATTCGCTAGCACGATCACTCTGGGAGAGAAAACTCCGATGAAGGAG 327
Query 280 GAGGACGCGAATCAGAAGAAAACAGAGAAGGAATCCACCGGTGGAGACGCCGCCGGAGGT 339
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 328 GAGGACGCGAATCAGAAGAAAACAGAGAACGAATCCACCGGTGGAGACGCCGCCGGAGGT 387
Query 340 AATAACAAGGGAGATAAAGGAATCGCTAGCTATTGGGGTGTTGAACCTAATAAGATTACT 399
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 388 AATAACAAGGGAGATAAAGGAATCGCGAGCTATTGGGGTGTTGAACCTAATAAGATTACT 447
Query 400 AAAGAAGATGGTTCTGAATGGAAGTGGAATTGTTTCAGGCCATGGGAGACTTATAAAGCT 459
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 448 AAAGAAGATGGTTCTGAATGGAAGTGGAACTGTTTCAGGCCATGGGAAACGTATAAAGCT 507
Query 460 GATTTGACTATAGATCTGAAGAAACATCATGTTCCTACGACGTTTCTTGATAGATTAGCT 519
||| | || |||||||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct 508 GATATAACGATAGATCTGAAGAAGCATCATGTTCCAACGACGTTTCTTGATAGAATAGCT 567
Query 520 TATTGGACTGTTAAATCTCTTCGTTGGCCTACTGATTTGTTCTTCCAGAGGAGATATGGT 579
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 568 TATTGGACTGTTAAATCTCTTCGTTGGCCTACCGATTTGTTCTTCCAGAGGAGATATGGA 627
Query 580 TGTCGAGCTATGATGCTTGAGACTGTAGCAGCAGTGCCTGGAATGGTTGGAGGAATGTTA 639
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 628 TGTCGAGCTATGATGCTTGAAACTGTAGCAGCAGTACCTGGAATGGTTGGAGGAATGTTA 687
Query 640 CTACACTGCAAATCGCTTCGACGTTTTGAGCAAAGTGGAGGATGGATTAAAGCCCTTCTT 699
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 688 CTACACTGCAAATCGCTTCGACGTTTTGAGCAAAGTGGAGGATGGATTAAGGCTCTTCTT 747
Query 700 GAGGAAGCAGAGAATGAGAGAATGCATCTTATGACATTCATGGAAGTCGCGAAACCGAAA 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 GAGGAAGCAGAGAATGAGAGAATGCATCTTATGACATTCATGGAAGTCGCGAAACCGAAA 807
Query 760 TGGTACGAGAGAGCGCTTGTGATCACTGTGCAAGGAGTTTTCTTCAACGCGTATTTCCTT 819
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct 808 TGGTACGAGAGAGCGCTCGTGATCACTGTGCAAGGAGTCTTCTTCAACGCTTATTTCCTT 867
Query 820 GGTTACCTAATCTCTCCCAAGTTTGCTCATCGTATGGTTGGATATCTTGAAGAAGAAGCA 879
|||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 868 GGTTACTTAATCTCTCCCAAGTTTGCTCATCGTATGGTTGGGTACCTTGAAGAAGAAGCG 927
Query 880 ATCCATTCTTACACTGAGTTTCTCAAGGAACTTGACAAAGGTAACATTGAGAATGTTCCT 939
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 ATCCATTCTTATACTGAGTTTCTCAAGGAACTTGACAAAGGTAACATTGAGAATGTTCCT 987
Query 940 GCTCCGGCTATCGCTATTGATTACTGGAGGCTTCCTGCTGATGCAACACTCCGTGATGTT 999
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 988 GCTCCGGCTATTGCTATTGATTACTGGAGGCTTCCTGCTGATGCGACACTTCGTGATGTT 1047
Query 1000 GTGATTGTTGTTCGTGCTGACGAGGCTCATCACCGTGATGTCAACCATTTTGCATCTGAT 1059
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1048 GTGATGGTTGTTCGTGCTGACGAGGCTCATCACCGTGATGTAAACCATTTTGCATCTGAT 1107
Query 1060 ATTCATTACCAAGGTCGTGAACTAAAGGAAGCTCCAGCTCCAATTGGGTATCATTGATTT 1119
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 ATTCACTACCAAGGTCGTGAACTAAAGGAAGCTCCAGCTCCAATTGGGTATCATTGATTC 1167
Query 1120 GATTGAAAGAAGAGCTTTTTCTCAAAAGTTTAAAACTTTGTTCTAAAGAATTTGAGTTCT 1179
|||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1168 GATTAAAAGAAGAGCTTTTTCTCAA--GTTTAAAACTTTGTTCTAAAGAATTTAAGTTCT 1225
Query 1180 TTTCACTTGTATATACATCATCATCAGCTCTACTTGAGCCAAACTTGGATTCGGCTTTCG 1239
|| ||||||||||||||||||| | |||| ||| ||||| |||||||||||||||||
Sbjct 1226 TTG-ACTTGTATATACATCATCA-C--CTCTGCTTAAGCCATACTTGGATTCGGCTTTCT 1281
Query 1240 TTGAATGTT 1248
|||||||||
Sbjct 1282 TTGAATGTT 1290
> AT3G27620.1 | Symbols: AOX1C | alternative oxidase 1C | chr3:10229045-10230702
REVERSE LENGTH=1341
Length=1341
Score = 767 bits (415), Expect = 0.0
Identities = 650/762 (85%), Gaps = 22/762 (3%)
Strand=Plus/Plus
Query 366 TAGCTATTGGGGTGTTGAA-CCTAAT-AAGATTACTAAAGAAGATGGTTCTGAATGGAAG 423
||| |||||||| | |||| || ||| || || || ||||||||||| ||||||||||
Sbjct 347 TAGTTATTGGGGCG-TGAAGCC-AATGAAAATCACCAAAGAAGATGGAACTGAATGGAAA 404
Query 424 TGGAATTG-TTTCAGGCCATGGGAGACTTATAAAGCTGATTTGACTATAGATCTGAAGAA 482
|||| ||| |||| |||||||||||||||||||||||||| | || |||||| |||||||
Sbjct 405 TGGAGTTGCTTTC-GGCCATGGGAGACTTATAAAGCTGATCTAACGATAGATTTGAAGAA 463
Query 483 ACATCATGTTCCTACGACGTTT-CTTGATAGATTAGCTTATTGGACT-GTTAAATCTCTT 540
|||||||||||| | || ||| | || | | |||||||||||| | ||||||||||||
Sbjct 464 GCATCATGTTCCTTCAAC-TTTACCGGACAAAATAGCTTATTGGA-TGGTTAAATCTCTT 521
Query 541 CGTTGGCCTACTGAT-TTGTTCTTCCAGAGGAGATATGGTTGTCGAGCTATGATGCTTGA 599
|| |||||||| ||| || |||||||||||||| |||||||| ||||| || ||||| ||
Sbjct 522 CGATGGCCTACCGATCTT-TTCTTCCAGAGGAGGTATGGTTGCCGAGCGATTATGCTAGA 580
Query 600 GACTGTAGCAGCAGTGCCTGGAATGGTTGGAGGAATG-TTACTACACTGCAAATCGCTTC 658
||| || ||||| || || |||||||||||||| ||| ||| | |||| |||||| | ||
Sbjct 581 GACGGTTGCAGCGGTTCCAGGAATGGTTGGAGGGATGCTTA-TGCACTTCAAATCTC-TC 638
Query 659 -GACGTTTTGAGCAAAGTGGAGGATGGATTAAAGCCCTTCTTGAGGAAGCAGAGAATGAG 717
| ||||| || |||||||| || ||||| ||||||||||| || |||||||||||||||
Sbjct 639 AGGCGTTTCGAACAAAGTGGGGGTTGGATCAAAGCCCTTCTCGAAGAAGCAGAGAATGAG 698
Query 718 AGAATGCATCTT-ATGACATTCATGGAAGTCGCGAAACCGAAATGGTACGAGA-GAGCGC 775
|||||||| ||| ||||||||||||||||| |||||||| ||||||||||| | |||| |
Sbjct 699 AGAATGCA-CTTAATGACATTCATGGAAGTAGCGAAACCCAAATGGTACGA-ACGAGCTC 756
Query 776 TTGTGATCACTGTGCAAGGAGTTTTCTTCAACGCGTATTTCCTTGGTTACCTAATCTCTC 835
|||||||| |||| ||||| |||||||||||||| ||||| | || ||| |||||||||
Sbjct 757 TTGTGATCTCTGTTCAAGGGGTTTTCTTCAACGCTTATTTAATCGGATACATAATCTCTC 816
Query 836 CCAAGTTTGCTCATCGTATGGTTGGATATCTTGAAGAAGAAGCAATCCATTCTTACACTG 895
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 817 CCAAGTTTGCTCATCGTATGGTTGGATACCTTGAGGAAGAAGCAATACATTCTTACACTG 876
Query 896 AGTTTCTCAAGGAACTTGACAAAGGTAACATTGAGAATGTTCCTGCTCCGGCTATCGCTA 955
|||||||||| ||||| || || |||||||| || ||||||||||| ||||||||||||
Sbjct 877 AGTTTCTCAAAGAACTCGATAACGGTAACATCGAAAATGTTCCTGCACCGGCTATCGCTG 936
Query 956 TTGATTACTGGAGGCTTCCTGCTGATGCAACACTCCGTGATGTTGTGATTGTTGTTCGTG 1015
||||||||||||||||| ||||||||||| || ||||||||||| || || |||||||
Sbjct 937 TTGATTACTGGAGGCTTGAAGCTGATGCAACGCTTCGTGATGTTGTCATGGTGGTTCGTG 996
Query 1016 CTGACGAGGCTCATCACCGTGATGTCAACCATTTTGCATCTGATATTCATTACCAAGGTC 1075
|||| ||||| ||||||||||| || ||||| | |||||| |||||||| ||||||||||
Sbjct 997 CTGATGAGGCGCATCACCGTGACGTTAACCACTATGCATCCGATATTCACTACCAAGGTC 1056
Query 1076 GTGAACT-AAAGGAAGCTCCAGCTCCAATTGGGTATCATTGA 1116
||| || |||| ||||||||||||| || || ||||| |||
Sbjct 1057 ATGAGCTGAAAG-AAGCTCCAGCTCCTATAGGATATCACTGA 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62650280160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5