BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479752
Length=2715
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22400.1 | Symbols: LOX5 | PLAT/LH2 domain-containing lipoxy... 2333 0.0
> AT3G22400.1 | Symbols: LOX5 | PLAT/LH2 domain-containing lipoxygenase
family protein | chr3:7926879-7931351 FORWARD LENGTH=2977
Length=2977
Score = 2333 bits (1263), Expect = 0.0
Identities = 1444/1534 (94%), Gaps = 2/1534 (0%)
Strand=Plus/Plus
Query 1181 AGATCGGCTTGGAGGACCGACGAAGAGTTTGCTAGGGAAATGCTGGCTGGACTCAATCCA 1240
||||||||||||||||| ||||||||||||||| | ||||||||||| || || |||||
Sbjct 1267 AGATCGGCTTGGAGGACTGACGAAGAGTTTGCTCGAGAAATGCTGGCCGGTCTTAATCCG 1326
Query 1241 GTGGTCATTAGTCGTCTCCAGGAATTTCCGCCGAAGAGCAATCTAGACTCTGCAAAGTAT 1300
||||| ||||| ||||| ||||||||||| || |||||| ||| |||||||||||||||
Sbjct 1327 GTGGTGATTAGCCGTCTTCAGGAATTTCCACCAAAGAGCTGTCTGGACTCTGCAAAGTAT 1386
Query 1301 GGAAACCAACACTCTTCCATACGAGA-AGAGCACATAGAACCAAACATGAACGGCCTCAA 1359
|||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct 1387 GGAAACCAACACTCTTCCATACGA-ACAGAGCACATAGAATCAAACATGAACGGCCTCAA 1445
Query 1360 TGTCCAAGAAGCTTTGGAACAGAATAAGCTATACATATTGGATCACCACGACGCATTGAT 1419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1446 TGTCCAAGAAGCTTTGGAACAGAATAAGCTATACATATTGGATCATCACGACGCATTGAT 1505
Query 1420 GCCTTACCTGACGCGGATAAACTCAACAAACACTAAAACCTATGCGACCCGAACCCTTCT 1479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1506 GCCTTACCTGACACGGATAAACTCAACAAACACTAAAACCTATGCGACCCGAACCCTGCT 1565
Query 1480 GTTGCTTCAAGAAGACGGAACTTTGAAGCCTCTCGCCATAGAGTTGAGTCTTCCACACGC 1539
||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1566 GTTGCTTCAAGCAGACGGAACACTGAAGCCTCTCGCCATAGAGCTGAGTCTTCCACACGC 1625
Query 1540 ACAAGGCGAATCACATGGATCGGTGAGCAAAGTTTTCACACCAGCAGAGAAAGGCGTAGA 1599
||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1626 ACAAGGCGAATCATATGGATCGGTCAGCAAAGTTTTCACACCAGCAGAGAAAGGTGTCGA 1685
Query 1600 GGGATCGGTTTGGCAGCTTGCTAAGGCTTATGCCGCAGTCAATGACTCTGGTTATCATCA 1659
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1686 GGGATCGGTTTGGCAACTTGCTAAGGCTTATGCTGCGGTCAATGACTCTGGTTATCATCA 1745
Query 1660 GCTTATAAGCCATTGGTTGCAAACGCATGCGGTGATTGAACCGTTCATAATCGCGTCAAA 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1746 GCTTATAAGCCATTGGTTGCAAACGCATGCGGTGATTGAACCGTTCATAATCGCGTCCAA 1805
Query 1720 CAGGCAACTCAGCGTTGTCCATCCGATCCATAAACTTCTACATCCTCATTTCCGTGACAC 1779
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 TAGGCAGCTCAGCGTGGTCCATCCGATCCATAAACTTCTACATCCTCATTTCCGTGACAC 1865
Query 1780 GATGAACATCAACGCATTGGCGCGACATGTCCTCATAAACTCAGACGGAGTTCTGGAGAG 1839
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 1866 TATGAACATCAACGCATTAGCGCGTCATGTACTCATAAACTCAGACGGAGTTCTTGAGAG 1925
Query 1840 AACAGTCTTCCCTAGTCGATACGCCATGGAAATGTCTTCTTCAATTTACAAGAATTGGGT 1899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 AACAGTCTTCCCTAGTCGATACGCCATGGAAATGTCTTCTTCAATTTACAAGAATTGGGT 1985
Query 1900 TTTCACCGATCAAGCTCTCCCCAAAGATCTCCTCAAACGAGGAGTTGCCGTCGAAGATCC 1959
||||||||| || |||||||| ||||| |||||||||||||||||||| || ||||||||
Sbjct 1986 TTTCACCGAGCAGGCTCTCCCAAAAGACCTCCTCAAACGAGGAGTTGCTGTTGAAGATCC 2045
Query 1960 GAAGAGCGACAATGGTGTTAAGCTTTTGATCGATGATTACCCGTTTGCGGTCGACGGTTT 2019
|| || ||||| || ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 2046 AAACAGTGACAACGGCGTTAAGCTTCTGATCGAAGATTACCCGTTTGCGGTCGACGGTTT 2105
Query 2020 AGAGATTTGGTCAGCGATCAAAACGTGGGTCACAGAGTACTGCTCATTCTATTACAAGAA 2079
|||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| ||
Sbjct 2106 AGAGATTTGGTCAGCGATCAAAACATGGGTCACAGAGTACTGCACATTCTACTACAATAA 2165
Query 2080 TGACAAAACCGTCCAAACAGATACAGAGATCCAATCATGGTGGACCGAGCTCCGAAGCAA 2139
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2166 TGACAAAACCGTCCAAACGGATACAGAGATCCAATCATGGTGGACCGAGCTCCGAACCAA 2225
Query 2140 AGGTCACGGGGACAAACAACACGAGTCATGGTGGCCTTCCATGCAAACCCGCGACGACCT 2199
||| ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2226 AGGCCACGGCGACAAACGACACGAGTCATGGTGGCCTTCGATGCAAACCCGCGACGACCT 2285
Query 2200 CATCGAAACCTGCACGATCATCATCTGGATCGCCTCTGCTCTTCACGCAGCAGTCAATTT 2259
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2286 AATCGAAACCTGCACGATCATCATCTGGATCGCCTCTGCTCTTCACGCAGCAGTAAATTT 2345
Query 2260 CGGACAGTACCCTTACGCCGGTTTTCTCCCTAACCGACCTACGGTCAGCCGCCGGTTTAT 2319
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2346 CGGACAGTACCCTTACGCCGGTTTTCTCCCTAACCGTCCTACCGTCAGCCGCCGGTTTAT 2405
Query 2320 GCCTGAACCAGGTACGGATGAGTACGCTGAACTGGCTGAAGACGCTGACGTAGCCTTCTT 2379
|||||||||||||||||||||||| ||||| |||| ||||| ||||||||||| |||||
Sbjct 2406 GCCTGAACCAGGTACGGATGAGTATGCTGAGCTGGAGGAAGATGCTGACGTAGCGTTCTT 2465
Query 2380 GAAGACGATCACGCCGCAGTTACAGACTCTACTTGGAATCTCCATCATAGAGATCTTGTC 2439
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2466 GAAGACGATCACGCCGCAGTTACAGACTCTACTTGGTATCTCCATCATAGAGATATTGTC 2525
Query 2440 TATGCATTCAACGGACGAGATCTACTTAGGACAAAGAGATTCACCGAATTGGACGGCGGA 2499
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2526 TATGCATTCAACGGACGAGATCTACTTAGGGCAAAGAGATTCACCGAATTGGACGGCGGA 2585
Query 2500 TGATGAGCCTTTGGAGGCTTTTAAACGGTTTGGGAAAGAGCTTGAGTTGATAGAGAACAA 2559
|||||||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||
Sbjct 2586 TGATGAGCCTTTGGAGGCGTTTAAGCGGTTTGGGAAAGAACTTGAGCTGATAGAGAACAA 2645
Query 2560 TATTATACGAAGAAACAATGACAAGAGGTTCAAGAACCGGACCGGACCGGTTAACATACC 2619
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2646 TATTATACGAAGAAACAATGACAAGAGGTTCAAGAACAGAACCGGACCGGTTAACATACC 2705
Query 2620 GTACACTTTGTTGTACCCGAATACGACGGATTACACAAGAGAAGGTGGGCTTACTGGGAA 2679
|||||| ||||||||||||||||| |||||||| || |||||||||||| ||||||||||
Sbjct 2706 GTACACATTGTTGTACCCGAATACTACGGATTATACGAGAGAAGGTGGGATTACTGGGAA 2765
Query 2680 AGGGATCCCTAACAGTGTCTCAATCTAAATATAA 2713
||||||||| ||||||||||||||||||| ||||
Sbjct 2766 AGGGATCCCGAACAGTGTCTCAATCTAAAGATAA 2799
Score = 1591 bits (861), Expect = 0.0
Identities = 1003/1069 (94%), Gaps = 19/1069 (2%)
Strand=Plus/Plus
Query 1 AAAAAGAACATTCTTATAATCACACATCTCTCTCTTCTTCATTCCCCAAGCATAGAA--t 58
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1 AAAAAGAACATTCTTATAATCACACATCTCTCTC-TCTTCATTCCCCAAGCATAGAATCT 59
Query 59 ct--ctctc--tc--tctctc-tGCCCCTTTTCTTGATTCTCACTCAGAGAAAATTCTGC 111
|| ||||| || |||||| | | ||||||||||||||| ||||||||||||||||||
Sbjct 60 CTCCCTCTCTATCTATCTCTCTTTCACCTTTTCTTGATTCTTACTCAGAGAAAATTCTGC 119
Query 112 AATATATATCGCCATGATTCACACCGACATCGCAGAGATCTTATGCGTCAAACCCAAGAC 171
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AATATATATCGCCATGATCCACACCGACATCGCAGAGATCTTATGCGTCAAACCCAAGAC 179
Query 172 AAAGAAGAAGACAAAAACAATGGAGGAAGATGTCAAG-A-A-GACGACGATGAAGATAGA 228
|| |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 180 AACGAAGAAGACAAAAACAATGGAGGAAGATGTCAAGAAGACGACGACGATGAAGATAGA 239
Query 229 AGGAGAAGTGGTTGTGATGAAGAAGAACCTTCTTGATTTCAAAGACGTTATGGCTTCTCT 288
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 240 AGGAGAAGTTGTTGTGATGAAGAAGAATCTCCTTGATTTCAAAGACGTTATGGCTTCTCT 299
Query 289 TCTTGATCGAGTCCATGAGCTTTTTGGTCGTCGTGTCTCTCTCCATCTCATTAGCTCTCA 348
||||||||| ||| |||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct 300 TCTTGATCGTGTCAATGAGCTTCTTGGTCGTCGTGTCTCTCTCCACCTCATCAGCTCTCA 359
Query 349 CCAACCCGACCCGGCCAATGAGAAGAGAGGAAGACTTGGAAAAGCAGCACATCTGGAAAA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCAACCCGACCCGGCCAATGAGAAGAGAGGAAGACTTGGAAAAGCAGCACATCTGGAAAA 419
Query 409 ATGGGTAACAAAAATAAAAACGTCAGTAACCGCTGAGGAAACTGCGTTTAGAGTAACGTT 468
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 ATGGGTAACAAAAATAAAAACGTCAGTAACCGCTGAGGAAACTGCGTTTGGAGTAACGTT 479
Query 469 TGATTGGGACGAGTCAATGGGACCACCGGCTGCGTTTGTGATCAAGAACCACCACCACAG 528
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 480 TGATTGGGACGAGTCAATGGGACCACCGGCTGCATTTGTGATCAAGAACCACCACCATAG 539
Query 529 CCAATTCTACCTTAAGTCCCTCACCCTCCGCGGCTTCCCCGCTGGCGAAGGCGGT----C 584
|||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |
Sbjct 540 TCAATTCTACCTTAAGTCCCTCACCCTCCGCGGCTTCCCTGATGGCGAAGGTGGTGCCAC 599
Query 585 --CGATACACTTCGTCTGCAATTCTTGGATTTACCCGAATCATCGATACCGCTCCGACCG 642
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGCGATACATTTCATCTGCAATTCTTGGATTTACCCGAATCATCGATACCGCTCCGACCG 659
Query 643 CGTTTTCTTCTCTAACAAGGCATATCTTCCAAGTGAAACACCGGAGCTAATCAaagagct 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGTTTTCTTCTCTAACAAGGCATATCTTCCAAGTGAAACACCGGAGCTAATCAAAGAGCT 719
Query 703 aagagaagaagagctgcagaatctaagaggcaatgagaaagaaggagaattcaaagaaTG 762
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 720 AAGAGAAGAAGAGCTAAAGAATCTAAGAGGCAATGAGAAAGGAGGAGAATTCAAAGAATG 779
Query 763 GGACAGAGTTTACGATTACGCTTATTACAACGACTTAGGTGCTCCTGACAAGGGTCCTGA 822
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 GGACAGAGTTTACGACTACGCTTATTACAACGACTTGGGTGCTCCTGACAAGGGTCCTGA 839
Query 823 CTCAGCTCGTCCGGTTCTTGGCGGTTCACCTGAGCTGCCTTATCCTCGTCGTGGCAAAAC 882
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 840 CTCAGTTCGTCCGGTTCTTGGCGGTTCACCTGAGCTGCCTTATCCTCGCCGTGGCAAAAC 899
Query 883 CGGCCGTAAACCCACCAAATCCGACCCTAAGTCCGAGAGTAGGCTGGCATTACTAAACTT 942
|||||||||| |||||||||| ||||||||||| || || |||||||| ||||||||| |
Sbjct 900 CGGCCGTAAATCCACCAAATCAGACCCTAAGTCTGAAAGCAGGCTGGCTTTACTAAACCT 959
Query 943 GAACATATACGTGCCAAGGGACGAACGGTTTAGCCATGTGAAGTTCTCTGACTTTCTTGC 1002
||||||||||||||||||||||| || ||||||||||||||||| || ||||| || ||
Sbjct 960 AAACATATACGTGCCAAGGGACGAGCGATTTAGCCATGTGAAGTTTTCAGACTTCCTCGC 1019
Query 1003 TTACGCGCTCAAGTCGGTGACTCAAGTTCTTGTCCCTGAGATCGCCTCT 1051
||| || |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1020 TTATGCACTCAAGTCCGTGACTCAAGTGCTTGTCCCTGAGATCGCCTCT 1068
Score = 202 bits (109), Expect = 2e-50
Identities = 122/128 (95%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 1052 ATGTTTTTCACCTCTATGACGGTAGTATTAAGCTCGCCCAATGGTCACACCATTTCTAAG 1111
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1109 ATGTTTTTCACCTCTATGACGGTAGTATTAAGCTCG-CCAATGGTCACACCATTTCTAAG 1167
Query 1112 CTTCGTGACGTTATCCCATGGGAGATGTTTAGAGAGCTCGTTCGAAACGACGGAGAACGG 1171
|| ||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1168 CTCCGTGATGTTATCCCGTGGGAGATGTTTAGAGAGCTAGTTCGCAACGACGGAGAACGG 1227
Query 1172 TTCTTGAA 1179
||||||||
Sbjct 1228 TTCTTGAA 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134848742784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5