BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479778

Length=827
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22620.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...  1162    0.0  


> AT3G22620.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr3:8008534-8009590 
FORWARD LENGTH=868
Length=868

 Score = 1162 bits (629),  Expect = 0.0
 Identities = 752/811 (93%), Gaps = 10/811 (1%)
 Strand=Plus/Plus

Query  22   acaacaaacaaacaaacCTTAATCTATCCAACAATGTCGAAGATTCTAGT-CGTGGTGGT  80
            ||||||||||| |||| |||||||||||||||||||||||||||| |  | | | |||||
Sbjct  49   ACAACAAACAATCAAAGCTTAATCTATCCAACAATGTCGAAGATTAT-TTCCCTTGTGGT  107

Query  81   GGCGATGATCGCAGTGCTAGCTTTGCCGATTCGCAGTCAACAACAACCGCTTAGCCAATG  140
            |||||||||||||||||||||||||||||||||  ||||||||||||| || ||||||||
Sbjct  108  GGCGATGATCGCAGTGCTAGCTTTGCCGATTCGTGGTCAACAACAACCTCTAAGCCAATG  167

Query  141  TACTCCGTCTATGATGACCACTGTGAGTCCTTGTATGAGCTTCATAACCAACAGTAGCAG  200
            |||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct  168  TACTCCATCAATGATGACCACCGTGAGTCCTTGTATGGGCTTCATAACCAACAGTAGCAG  227

Query  201  CAACGGAACTTCGCCGTCGTCTGATTGTTGCAACTCGCTGAGGTCTTTGACCACCGGAGG  260
            ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  228  CAATGGAACTTCGCCGTCGTCTGATTGTTGTAACTCGCTGAGGTCTTTGACCACCGGAGG  287

Query  261  GATGGGATGTCTCTGTCTAATTGTCACTGGAACTGTGCCTTTCAATATTCCGATTAACCG  320
             ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  288  AATGGGATGTCTTTGTCTAATTGTCACTGGAACTGTTCCTTTCAATATTCCTATTAACCG  347

Query  321  CACAACCGCCGTCTCTCTTCCTCGTGCTTGTAACATGCCTAGAGTCCCTCTTCAATGCCA  380
            ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  348  CACAACCGCTGTCTCACTTCCCCGTGCTTGTAACATGCCTAGAGTCCCTCTTCAATGCCA  407

Query  381  AGCCAATATTGCTCCAGCTGCTGCTCCTGGACCTGCTGGTACATTTGGACCGTCGATGTC  440
            |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct  408  AGCCAATATTGCTCCAGCTGCTGCTCCTGGACCTGCTGCTACATTTGGACCATCGATGTC  467

Query  441  TCCAGGTCCAGCGACGAATCCTATAGTCCCAGAGCCAACTGCGTCAGCTCAGACACCACA  500
            |||||| |||| |||| |||| || || |||||||||||| || ||||||||||||||||
Sbjct  468  TCCAGGACCAGAGACGGATCCAATTGTTCCAGAGCCAACTCCGGCAGCTCAGACACCACA  527

Query  501  GTCTGATACAACCCGACC-TTTCACACCATCTGCCGATGGTGGAGCTCCAACATCAGACG  559
            |||||||||||||||||| ||| |||||||| | ||| ||||||||||||||||||||||
Sbjct  528  GTCTGATACAACCCGACCATTT-ACACCATCCGTCGACGGTGGAGCTCCAACATCAGACG  586

Query  560  ACGGAGGCAGCACCAGTCGACCTTCTGAGACTCCTTCATCTGCCTACGCACTCTCACCAT  619
            ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  587  ACGGAGGAAGCACCAGTCGACCTTCTGAGACTCCTTCATCCGCCTACGCACTCTCACCAT  646

Query  620  CTCTTTTCTTATTCAGCATCGCCCTCGTAGCTCTCAAATTCTACTAATGATGATTTCTTT  679
            ||||| |||| ||||||||||||||||||||||||||||||||||   ||||||| ||||
Sbjct  647  CTCTTCTCTTCTTCAGCATCGCCCTCGTAGCTCTCAAATTCTACT---GATGATTCCTTT  703

Query  680  -GTTTCTTTGTATTCCTCATGTGATTTGATTTATGCATTGTTGATTATATAAAGAAACCA  738
             ||||||||| |||||| |||||||||||||||||||| |||||||||| ||||||||||
Sbjct  704  TGTTTCTTTGCATTCCTTATGTGATTTGATTTATGCATCGTTGATTATAGAAAGAAACCA  763

Query  739  TTTATTTGGTCATTGCTTTGTGGAATAAGCTT--GTGTATATTGTTCTTTGTTTCGAGTG  796
            ||||||||||||||||||||||||||||||||  ||||||| |||||| |||||||||||
Sbjct  764  TTTATTTGGTCATTGCTTTGTGGAATAAGCTTTTGTGTATACTGTTCTCTGTTTCGAGTG  823

Query  797  AGATTTATTTTGTATTGTTAAAGTAATACAT  827
            ||||||||||||| ||||| |||||||||||
Sbjct  824  AGATTTATTTTGTGTTGTTGAAGTAATACAT  854



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40287785894


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5