BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479786 Length=1147 Score E Sequences producing significant alignments: (Bits) Value AT3G22740.1 | Symbols: HMT3 | homocysteine S-methyltransferase ... 1766 0.0 > AT3G22740.1 | Symbols: HMT3 | homocysteine S-methyltransferase 3 | chr3:8032959-8035809 REVERSE LENGTH=1384 Length=1384 Score = 1766 bits (956), Expect = 0.0 Identities = 1084/1147 (95%), Gaps = 3/1147 (0%) Strand=Plus/Plus Query 1 AACCATATGAATCTCACGATCAAAGATAACATCTCATATTCTTCTATATAGTACTTGTCT 60 ||||||||||||||||||||||||||||| ||||| | || ||||||||||| |||||| Sbjct 1 AACCATATGAATCTCACGATCAAAGATAATATCTC--A-TCATCTATATAGTATTTGTCT 57 Query 61 CGGTAATAGAGACGTACACACTTTGTTTATAGTCAAATCAATATGGGATCTTTCGTGAAA 120 || || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 58 CGATATTAGAGACGTACACACTTTGTTTATACTCAAATCAATATGGGATCTTTCGTGAAA 117 Query 121 GAGGAAACGTCGTCGTTGATGACGGATTTTTTGGAGAACTGTGGCGGTTATGCGGTGGTG 180 || |||||||||||||||||||| |||||||||||||| || || ||||||||||||||| Sbjct 118 GAAGAAACGTCGTCGTTGATGACAGATTTTTTGGAGAAGTGCGGTGGTTATGCGGTGGTG 177 Query 181 GACGGAGGGTTTGCGACGGAGCTACAACGCCACGGGGCTGACATCAATGATCCACTTTGG 240 || ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 178 GATGGAGGGTTTGCGACGGAGCTACAGCGCCACGGAGCTGATATCAATGATCCACTTTGG 237 Query 241 AGTGCTAAGTGCCTCATTACTTCTCCTCACCTTGTTACAAAGGTGCACTTGGATTACCTT 300 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 AGTGCTAAGTGCCTTATTACTTCTCCTCACCTTGTTACAAAGGTGCACTTGGATTACCTT 297 Query 301 GAATCTGGAGCAAATATCATCATTACAGCATCTTACCAGGCGACGATACAAGGATTCGTA 360 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || Sbjct 298 GAATCTGGAGCAAATATCATCATAACAGCATCTTACCAGGCGACGATACAAGGTTTTGTG 357 Query 361 GCAAAAGGTTTATCTGTGGGAGAAGCGGAAAGTTTACTTAGGAGGAGCGTTGAAATCACG 420 ||||||||| |||| ||||||||||| |||| ||||||||| |||||||||||||||||| Sbjct 358 GCAAAAGGTCTATCGGTGGGAGAAGCAGAAAATTTACTTAGAAGGAGCGTTGAAATCACG 417 Query 421 TACGAGGCACGTGAGATTTTCTACAACAGATGCACCAAGGGTTCATGGGATTTCGCCTAC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 TACGAGGCACGTGAGATTTTCTACAACAGATGCACCAAGGGTTCATGGGATTTCGCCTAC 477 Query 481 GCCGGAAAAGCTTCCCGGCGACCTATTCTTGTTGCAGCTTCCGTTGGTAGCTATGGAGCT 540 || ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| Sbjct 478 GCTGGAAAAGCTTCCCGGAGACCAATTCTTGTCGCAGCTTCCGTTGGTAGCTATGGAGCT 537 Query 541 TATCTCGCTGACGGCTCCGAATACAGTGGGATATATGGAGATTCTGTGAGTAAGGAGACA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 TATCTCGCTGACGGCTCCGAATACAGTGGGATATATGGAGATTCTGTGAGTAAGGAGACA 597 Query 601 TTAAAGGACTTCCATAGAAGAAGAGTTCAAATCTTAGCGAACTCTGGAGCCGATTTCATC 660 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| | || Sbjct 598 TTAAAGGATTTCCATAGAAGAAGAGTTCAAATCTTAGCAAAATCTGGAGCCGACCTAATA 657 Query 661 GCATTCGAGACTATTCCAAATAAGCTCGAAGCAGAGGCGTATGCGAATCTTCTTGAGGAG 720 |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 658 GCATTCGAGACTATTCCAAATAAGCTCGAAGCAGAGGCTTATGCGGATCTTCTTGAGGAG 717 Query 721 GAAGACATCAATATTCCGGCATGGTTTTCGTTCACTTCAAAGGACGGAGTCACTGTGCCA 780 ||||| ||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||| Sbjct 718 GAAGATATCGATATTCCGGCATGGTTCTCGTTCACTTCCAAGGACGGAGTCAGTGTGCCA 777 Query 781 CGAGGAGATTCGGTTGTAGAATGTGCGAAAGTGGCAGATTCTTGCAAGAAAGTGGTGGCC 840 ||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 778 CGAGGAGATTCAGTTGTAGAATGTGCGAAAGTGGCAGATTCATGCAAGAACGTGGTGGCC 837 Query 841 ATTGGAATCAATTGTACTGCACCAAGATACATACATGATTTGATTATCTCCTTGCGCCAG 900 |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||| Sbjct 838 ATTGGAATCAATTGTACTGCACCAAGATACATTCATGCTTTAATTATCTCCTTGCGCCAG 897 Query 901 GTGACCCGCAAACCGATCGTTGTGTACCCAAATAGCGGGGAAGTCTACGACGGTCTGAAC 960 |||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 898 ATGACACGCAAACCAATCGTTGTATACCCAAACAGCGGGGAAGTCTACGACGGTCTGAAC 957 Query 961 AAGAAATGGATTAAGTCAGAGGGAGAGTCAGAGGAGGATTTTGTGTCGTACGTGAGTAAA 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 AAGAAATGGATTAAGTCAGAGGGAGAGTCAGAGGAGGATTTTGTGTCGTACGTGAGTAAA 1017 Query 1021 TGGAGAGATGCAGGAGCATCTCTGTTTGGAGGATGTTGTCGGACTACTCCAAACACCATC 1080 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1018 TGGAGAGATGCAGGAGCTTCTCTGTTTGGAGGATGTTGTCGGACTACTCCAAACACCATC 1077 Query 1081 AGAGCCATTGCTAAAGTTCTCTCCGACGAATCTCCCGCAGCATCAAAACCCAAATTCCGG 1140 |||||||||||||||||||||||||||||| || | ||||||||||||||||||||| || Sbjct 1078 AGAGCCATTGCTAAAGTTCTCTCCGACGAACCTTCTGCAGCATCAAAACCCAAATTCGGG 1137 Query 1141 CAGTAGA 1147 || |||| Sbjct 1138 CAATAGA 1144 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56274810945 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5