BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479795
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22845.1 | Symbols: | emp24/gp25L/p24 family/GOLD family pr... 1210 0.0
> AT3G22845.1 | Symbols: | emp24/gp25L/p24 family/GOLD family
protein | chr3:8087307-8088747 FORWARD LENGTH=908
Length=908
Score = 1210 bits (655), Expect = 0.0
Identities = 792/855 (93%), Gaps = 22/855 (3%)
Strand=Plus/Plus
Query 24 AAGAAGATCTAAAAAAGAAGATGGAGAGAAGACAAGCGAAGATCCATGTCTTTGTATTGA 83
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 47 AAGAAGATCTAAAAAAAAAGATGGAGAGACGACAAGCGAAGATCCATGTCTTTGTATTGA 106
Query 84 TTGGTCTAATTCTATTGAATTCGATCAATCAAATCTCATCGCTCTCTGTAACGGTGAACG 143
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 107 TAGGTCTAATTCTATTGAATTCAATCAATCAAATCTCATCTCTCTCTGTAACGGTGAACG 166
Query 144 ACGAAGAATGTGTCCAAGAATACGTCCTTTACGAAGGCGACACTGTTTCCGGTAACTTCG 203
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 167 ACGAAGAATGTGTCCAAGAGTACGTCCTTTACGAAGGCGACACTGTTTCCGGTAACTTCG 226
Query 204 TCGTCGTCGATCATGATATCTTCTGGGGATCAGATCATCCTGGTTTAGATTTCACGGTGA 263
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 227 TCGTCGTCGATCATGATATCTTCTGGGGATCCGATCATCCTGGTTTGGATTTCACGGTGA 286
Query 264 CGTCTCCAGCTGGGAACATTGTGCAAACTTTAAAGGGAACATCTGGAGATAAGTTTGAGT 323
|||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 287 CGTCACCAGCTGGGAACATTGTACAGACTTTAAAGGGAACATCTGGAGATAAGTTTGAGT 346
Query 324 TTAAGGCTCCAAGAAGTGGAATGTATAAATTTTGTTTCCACAATCCTTATTCAACTCCTG 383
|||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 347 TTAAGGCTCCAAAAAGTGGAATGTACAAATTTTGTTTCCACAATCCTTATTCTACTCCTG 406
Query 384 AAACTGTCTCCTTCTATATTCATGTTGGTCATATTCCTAATGAGCATGACTTAGCCAAAG 443
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AAACTGTCTCCTTTTATATTCATGTTGGTCATATTCCTAATGAGCATGACTTAGCCAAAG 466
Query 444 ATGAACATTTGGACCCGGTAAATGTTAAGATAGCTGAGTTGAGAGAGGCTTTGGAATCTG 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 ATGAACATTTGGACCCGGTAAATGTTAAGATAGCTGAGTTGAGAGAGGCTTTGGAATCTG 526
Query 504 TTGTTGCTGAGCAGAAGTATTTGAAAGCACGTGATACTCGTCACCGTCATACGAATGAAA 563
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 527 TTGTTGCTGAGCAGAAGTATTTGAAAGCTCGTGACACTCGTCACCGTCATACGAATGAGA 586
Query 564 GCACGAGAAAGCGTGTGATATTGTACACAGTAGGAGAGTACATATTCCTTGCAGCAGCTA 623
||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 587 GCACGAGAAAGCGAGTGATATTCTACACAGTAGGAGAGTACATTTTCCTTGCCGCAGCTA 646
Query 624 GTGGACTTCAAGTTCTCTACATCCGCAAGCTCTTCAGCAAGTCGGTCGCATACAACAGAG 683
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 647 GTGGACTTCAAGTTCTCTACATCCGCAAGCTCTTCAGCAAGTCGGTAGCATACAACAGAG 706
Query 684 TTTGAACATAACAAAACATCAGTTT-ATGT-TTG-G-C---TTG--GT--GAA-CGA--A 729
|||||||||| |||||| |||| | || ||| | | || || ||| || |
Sbjct 707 TTTGAACATAGCAAAACCTCAGAGCGAGGTCTTGTGTCCAGTTTATGTTTGAATCGGTGA 766
Query 730 TCAAAACACAAATCTTAAACAGTGTTAGTTAACTTAAAAGCTTCAATAGCGAAAGACTCC 789
||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 767 TCAAAACACAA-TCCTAAACAGTGTTAGTTAATTTAAAAGCTTCAATAGCGAAAGACTTA 825
Query 790 CTTTTTGTTTTTGGTTTCTACACTTTTCTTTGGCTTCAATCTACTTATGCAGAACTTGAT 849
||||||||||||||||||||||||||| | | || | ||| ||||||||||||||
Sbjct 826 CTTTTTGTTTTTGGTTTCTACACTTTTATAAGT-TT-A--CTA---ATGCAGAACTTGAT 878
Query 850 AAAGCTTATTTCTGA 864
|||||| |||||||
Sbjct 879 GAAGCTTTTTTCTGA 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5