BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479799 Length=1596 Score E Sequences producing significant alignments: (Bits) Value AT3G22890.1 | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112723-... 2429 0.0 AT4G14680.1 | Symbols: APS3 | Pseudouridine synthase/archaeosin... 1184 0.0 > AT3G22890.1 | Symbols: APS1 | ATP sulfurylase 1 | chr3:8112723-8114992 FORWARD LENGTH=1764 Length=1764 Score = 2429 bits (1315), Expect = 0.0 Identities = 1509/1599 (94%), Gaps = 27/1599 (2%) Strand=Plus/Plus Query 1 ACTATAAACTCTATAAAAACCAATTTTCATTTCCAATTGAATTGGTAACAAACCAAATCT 60 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 1 ACTATAAACTCTATAAAAACCAATTTTCACTTCCAATTGAATTGGGAACAAACCAAATCT 60 Query 61 CTCTCT-TCTCTATTTGAGCCAAAAGCTTGAAGCAGCCATTAGCCTAA-GAAACCTTCAA 118 || ||| |||| | || || ||||||||||||||| |||||||| |||||||||| Sbjct 61 CTATCTCTCTCCA-TT-AG-----AGCTTGAAGCAGCCA-TAGCCTAACAAAACCTTCAA 112 Query 119 CAATGGCTTCCATGGCTGCAATCTTAAGCAAAACTCCATTCCTCTCTCAACCACTCACCA 178 |||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 113 CAATGGCTTCAATGGCTGCCGTCTTAAGCAAAACTCCATTCCTCTCTCAACCACTAACCA 172 Query 179 AACCATCTCCAATCTCCGATCTCCCCTTCGCCGCCGTATCCTTTCCTTCCAAATCCCTAC 238 || ||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 173 AATCATCTCCAAACTCCGATCTCCCCTTCGCCGCGGTTTCCTTCCCTTCCAAATCCCTAC 232 Query 239 GCCGCCGC-AACGGATCAATCCGAGCCGGCTTAATCGCGCCTGACGGTGGTAAGCTTGTA 297 |||||||| | ||||||||||||||||| |||||||| || |||||||||||||||||| Sbjct 233 GCCGCCGCGTA-GGATCAATCCGAGCCGGATTAATCGCTCCCGACGGTGGTAAGCTTGTA 291 Query 298 GAGCTCATCGTGGAAGAGCCAAAGCGACGGGAGAAGAAACACGAGGCGGCGGAGCTGCCA 357 |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 292 GAGCTCATCGTGGAAGAGCCAAAGCGGCGAGAGAAGAAACACGAGGCGGCGGATTTGCCA 351 Query 358 CGTGTTGAGCTGACGACGATTGACTTGCAATGGATGCATGTATTAAGCGAAGGCTGGGCA 417 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 CGTGTTGAGCTGACGGCGATTGACTTGCAATGGATGCATGTATTAAGCGAAGGCTGGGCA 411 Query 418 AGTCCACTCGGAGGTTTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTTAACTCA 477 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 AGTCCACTCGGAGGTTTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTTAACTCG 471 Query 478 CTACGTCTTGACGACGGCTCCGTCGTTAATATGTCGGTGCCTATTGTTCTCGCTATTGAC 537 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 472 CTACGTCTTGACGACGGCTCCGTCGTTAACATGTCCGTGCCTATTGTTCTCGCTATTGAC 531 Query 538 GATGAGCAAAAAGCACGTATCGGCGAGTCTAAACGTGTCGCTCTTTTTGATTCCGATGGT 597 ||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 532 GATGAACAAAAAGCACGTATCGGCGAGTCTACACGTGTCGCTCTTTTCAATTCCGATGGT 591 Query 598 AATCCCGTCGCTATCCTCAGCGACATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATA 657 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 592 AACCCCGTCGCTATCCTCAGCGATATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATA 651 Query 658 GCTAGAACATGGGGTACGACGGCTCCAGGTTTGCCTTATGTAGATGAGGCGATAACTAAT 717 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 652 GCTAGAACATGGGGTACGACGGCTCCAGGTTTGCCTTACGTAGACGAGGCGATAACTAAT 711 Query 718 GCTGGAAACTGGCTTATTGGGGGTGATCTTGAGGTTCTTGAGCCAGTTAAGTACAATGAT 777 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 712 GCTGGAAACTGGCTCATTGGGGGTGATCTTGAGGTTCTTGAGCCAGTGAAGTACAATGAT 771 Query 778 GGGCTTGATCGTTTCAGACTTTCGCCTGCTGAGCTACGTAAAGAGTTGGAGAAGCGTAAT 837 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 772 GGGCTTGATCGTTTCAGGCTTTCGCCTGCTGAGTTACGTAAAGAGTTGGAGAAGCGTAAT 831 Query 838 GCGGATGCTGTGTTTGCTTTCCAGCTGAGGAATCCGGTTCACAATGGTCATGCTCTTCTT 897 |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 832 GCGGATGCGGTGTTTGCTTTCCAGCTGAGGAATCCTGTTCATAATGGTCATGCTCTTCTT 891 Query 898 ATGACTGATACTCGTAGGAGACTTCTTGAGATGGGATATAAAAACCCTATCCTTTTGCTT 957 ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| Sbjct 892 ATGACTGATACTCGTAGGAGACTTCTTGAGATGGGTTACAAAAACCCTATTCTTTTGCTT 951 Query 958 CATCCGTTAGGAGGGTTCACAAAGGCTGATGATGTTCCTCTAGACTGGAGGATGAAGCAA 1017 ||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||| Sbjct 952 CATCCGTTAGGTGGGTTTACAAAGGCTGATGATGTTCCTTTAGATTGGAGGATGAAGCAA 1011 Query 1018 CACGAGAAGGTGCTAGAGGATGGTGTTCTTGATCCAGAGACTACAGTGGTTTCGATATTC 1077 ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1012 CACGAGAAGGTTCTAGAGGATGGTGTTCTCGATCCGGAGACTACAGTGGTTTCGATATTC 1071 Query 1078 CCGTCTCCTATGCATTACGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGAATC 1137 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1072 CCGTCACCTATGCATTACGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGAATC 1131 Query 1138 AATGCTGGTGCTAACTTTTACATTGTGGGTCGTGATCCAGCCGGGATGGGTCATCCAGTA 1197 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1132 AATGCTGGTGCTAACTTTTACATTGTGGGTCGTGATCCTGCTGGGATGGGTCATCCAGTA 1191 Query 1198 GAAAAACGTGATCTTTACGATGCTGATCATGGAAAGAAAGTACTAAGCATGGCACCAGGA 1257 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1192 GAGAAACGTGATCTTTACGATGCTGATCATGGAAAGAAAGTACTAAGCATGGCACCAGGA 1251 Query 1258 CTCGAACGACTCAACATCCTTCCATTCAGGGTTGCTGCATATGACAAGACACAAGGCAAG 1317 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1252 CTCGAACGACTCAACATCCTTCCTTTCAGGGTTGCTGCATATGACAAGACGCAAGGCAAG 1311 Query 1318 ATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGATG 1377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1312 ATGGCTTTCTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGATG 1371 Query 1378 CGCACATTGGCAAAGAACAACGAAAACCCTCCTGACGGTTTCATGTGCCCAGGTGGATGG 1437 ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| Sbjct 1372 CGCACATTGGCAAAGAACAACGAAAACCCGCCAGACGGTTTTATGTGCCCAGGTGGATGG 1431 Query 1438 AAAGTTCTGGTGGATTACTATGAGAGCTTGACTCCAGCAGGTAATGGTAGACTACCAGAA 1497 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 1432 AAAGTTCTGGTGGATTACTATGAGAGCTTGACTCCGGCGGGTAATGGTAGACTACCAGAA 1491 Query 1498 GTGGTTCCGGTTGAAGACAGAAGACAAAACTGTCTCTGCTTCGTTTCAAATTGTAACGTT 1557 ||||||||||| | | | || ||||||||| || | || | |||||||||||||| Sbjct 1492 GTGGTTCCGGT-GTA-A--GA---CAAAACTGT-TC-G-TT--T--CAAATTGTAACGTT 1537 Query 1558 TGTGTTGTGAAGCCCTTGTAGCAACAATCATTGTTGTAT 1596 |||||||||||||| |||||||||||||||||||||||| Sbjct 1538 TGTGTTGTGAAGCC-TTGTAGCAACAATCATTGTTGTAT 1575 > AT4G14680.1 | Symbols: APS3 | Pseudouridine synthase/archaeosine transglycosylase-like family protein | chr4:8413288-8415391 REVERSE LENGTH=1633 Length=1633 Score = 1184 bits (641), Expect = 0.0 Identities = 1037/1227 (85%), Gaps = 32/1227 (3%) Strand=Plus/Plus Query 259 CGAGCCGGCTTAATCGCGCCTGACGGTGGTAAGCTTGTAGAGCTCATCGTGGAAGAGCCA 318 ||||| |||||||||| ||| || ||||| || ||||| || || | || || || Sbjct 225 CGAGCTGGCTTAATCGAGCCAGATGGTGGGAAACTTGTGGATCTTGTTGTACCGGAACC- 283 Query 319 AAG-CGACGGGAGAAGAAACACGAGGCGGCGGAGCTGCC-ACGTGTTGAG-CTGACGACG 375 || || || |||||||||||||| |||||||| |||| | | | |||| ||||| || Sbjct 284 GAGACGGCGAGAGAAGAAACACGAAGCGGCGGATTTGCCGA-GAG-TGAGATTGACGGCG 341 Query 376 ATTGACTTGCAATGGATGCATGTATTAAGCGAAGGCTGGGCAAGTCCAC-TCG-GAGGTT 433 ||||| ||||||||||||||||| || || ||||| ||||| ||||| | ||| | |||| Sbjct 342 ATTGATTTGCAATGGATGCATGTGTTGAGTGAAGGTTGGGCTAGTCCTCTTCGTG-GGTT 400 Query 434 TCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTTAACTCACT-ACGTCTTGACGAC 492 | ||||| ||||| ||||||||||||||||||||||| || | | | ||| || || Sbjct 401 T-ATGAGGGAATCTGAGTTCCTCCAAACTCTTCATTTCAATTTGTTGA-ATCTCGATGAT 458 Query 493 GGCTCCGTCGTTAATATGTCGGTGCCTATTGTTCTCGCTATTGACGATGAGCAAAAAGCA 552 || || || ||||||||||| |||||||||||||| || ||||| ||| | |||||||| Sbjct 459 GGGTCTGTTGTTAATATGTCTGTGCCTATTGTTCTTGCGATTGATGATCAACAAAAAGC- 517 Query 553 CGT-ATCGGCGAGTCTAAACGTGTCGCTCTTTTTGATTCCGATGGTAATCCCGTCGCTAT 611 | | ||||| || |||||||||||| | ||| ||||||| |||| |||||| ||||||| Sbjct 518 CCTAATCGGTGAATCTAAACGTGTCTCCCTTGTTGATTCTGATGATAATCCAATCGCTAT 577 Query 612 CCTCAGCGACATTGAGATTTATAAGCATCC-AAAGGAAGAAAGGATAGCTAGAACATGGG 670 |||| || |||||||||||||| ||||| ||| ||||| | ||||| ||||| |||| Sbjct 578 TCTCAATGATATTGAGATTTATAAACATCCGAAA-GAAGAGCGAATAGCGAGAACTTGGG 636 Query 671 GTACGACGGCTCCAGGTTTGCCTTATGTAGATGAGGCGATAACTAATGCTGGAAACTGGC 730 ||||||| || || ||||||||||||||||| ||||||||||| ||||||||| |||||| Sbjct 637 GTACGACTGCACCGGGTTTGCCTTATGTAGAAGAGGCGATAACCAATGCTGGAGACTGGC 696 Query 731 TTATTGGGGGTGATCTTGAGGTTCTT-GAGCCAGTTAAGTACAATGATGGGCTTGATCGT 789 | ||||||||||||||||||||| || || || ||||||||||||||||||||||||||| Sbjct 697 TCATTGGGGGTGATCTTGAGGTT-TTGGAACCTGTTAAGTACAATGATGGGCTTGATCGT 755 Query 790 TTCAGACTTTCGCCTG-CTGAGCTACGTAAAGAGTTGGAGAAGCGTAATGCGGATGCTGT 848 ||||| ||||| || | ||| || ||||| ||| | ||||| ||| ||||||||| || Sbjct 756 TTCAGGCTTTC-CCCGTTTGAACTGCGTAAGGAGCTAGAGAAACGTGGTGCGGATGCGGT 814 Query 849 GTTTGC-TTTCCAGCTGAGGAATCCGGTTCACAATGGTCATGCTCTTCTTATGACTGATA 907 ||||| ||| ||||| ||||| || ||||| ||||| |||||||||||||||||||||| Sbjct 815 CTTTGCGTTT-CAGCTTAGGAACCCAGTTCATAATGGACATGCTCTTCTTATGACTGATA 873 Query 908 CTCGTAGGAGACTTCTTGAGATGGGATATAAAAACCCTATCCTTTTGCTTCATCCGTTAG 967 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | Sbjct 874 CTCGTAGGAGACTTCTTGAGATGGGTTATAAAAACCCTATCCTTTTGCTTCATCCATTGG 933 Query 968 GAGGGTTCACAAAGGCTGATGATGTTCCTCTA-GACTGGAGGATGAAGCAACACGAGAAG 1026 ||||||| ||||| |||||||||||||||||| | |||| | ||||| || ||||||||| Sbjct 934 GAGGGTTTACAAAAGCTGATGATGTTCCTCTAAG-CTGGCGAATGAAACAGCACGAGAAG 992 Query 1027 GTGCTAGAGGATGGTGTTCTTGATCCAGAGACTACAGTGGTTTCGATATTCCCGTCTCCT 1086 ||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 993 GTGCTAGAGGATGGTGTTCTTGATCCAGAGACTACTGTGGTTTCCATATTCCCATCTCCA 1052 Query 1087 ATGCAT-TACGCTGGTCCAACCGAAGTGCAGTGGCACGCAAAGGCTAGAATCAATGCTGG 1145 |||| | || ||||||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct 1053 ATGC-TCTATGCTGGTCCAACCGAAGTCCAATGGCACGCAAAGGCTAGGATCAATGCTGG 1111 Query 1146 TGCTAACTTTTACATTGTGGGTCGTGATCCAGCCGGGATGGGTCATCCAGTAGAAAAACG 1205 ||||||||| |||||||| ||| | ||||| || || ||||||||||| || || ||||| Sbjct 1112 TGCTAACTTCTACATTGTCGGTAGGGATCCGGCTGGAATGGGTCATCCCGTGGAGAAACG 1171 Query 1206 TGATCTTTACGATGCTGATCATGGAAAGAAAGTACTAAGCATGGCACCAGGACTCGAACG 1265 |||||| |||||||||||||| || |||||||| ||||||||||| || ||||||||||| Sbjct 1172 TGATCTGTACGATGCTGATCACGGGAAGAAAGTTCTAAGCATGGCTCCTGGACTCGAACG 1231 Query 1266 ACTCAACATCCTTCCATTCAGGGTTGCTGCATATGACAAGACACAAGGCAAGATGGCTTT 1325 ||||||||| ||||| |||||||||||||| || || ||||||||||| ||||||||||| Sbjct 1232 ACTCAACATTCTTCCTTTCAGGGTTGCTGCGTACGATAAGACACAAGGAAAGATGGCTTT 1291 Query 1326 CTTCGATCCCTCGAGGCCTCAAGATTTCTTGTTCATCTCCGGCACTAAGATGCGCA-CAT 1384 ||| |||||||| ||| |||| || ||||||||||| || |||||||||||| | | ||| Sbjct 1292 CTTTGATCCCTCAAGGGCTCAGGACTTCTTGTTCATTTCTGGCACTAAGATGAG-AGCAT 1350 Query 1385 TGGCAAAGAACA-ACGAAAACCCTCCTGACGG-TTTCATGTGCCCAGGTGGATGGAAAGT 1442 |||||||||||| | || ||||| || || || ||| |||||||| || || |||||||| Sbjct 1351 TGGCAAAGAACAGA-GAGAACCCACCAGATGGATTT-ATGTGCCCTGGAGGCTGGAAAGT 1408 Query 1443 TCTGGTGGATTACTATGAGAGCTTGAC 1469 || ||||||||||| || || ||||| Sbjct 1409 CCTTGTGGATTACTACGACAGTTTGAC 1435 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78814855650 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5