BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479829
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23170.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1070 0.0
> AT3G23170.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G14450.1);
Has 74 Blast hits to 74 proteins in 6 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:8267942-8268735
REVERSE LENGTH=794
Length=794
Score = 1070 bits (579), Expect = 0.0
Identities = 691/743 (93%), Gaps = 16/743 (2%)
Strand=Plus/Plus
Query 1 TCTAAAAATCGAAACTTTAACCTTTTTTCTCGGAACACCACAAATCTCATTTTTAGCttt 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 26 TCTAAAAATCTAAACTTTAACCTTTTTTCTCGGAACACCACAAATCTCATTTTTAGC--T 83
Query 61 tttttCGATTCCAAATC---TTGATTATTTAGTCTTCTTCAAGAACTCGATTTTCGTTCG 117
|||| |||||||||||| ||| |||||||||||||||||||||||||| |||| ||||
Sbjct 84 TTTTCCGATTCCAAATCTTTTTGCTTATTTAGTCTTCTTCAAGAACTCGA-TTTCTTTCG 142
Query 118 CGTTTATGTCGACGACGATGAAGAGACAGGGCTGCAGCTCAGATTCCGGTGATCTACGGC 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 CGTTTATGTCGACGACGATGAAGAGACAGGGCTGCAGCTCAGATTCCGGTGATCTACGGC 202
Query 178 GGCAGCCCAGTCGTCTACAAAAACGACCTCCGGCTTTAAAAATCGTTCCGGCGACTCCGG 237
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 203 GGCAGCCCAGTCGTCTACTAAAACGACCCCCGGCGTTAAAAATCGTTCCGGCGACTCCGG 262
Query 238 CGGCGAATAACTGGAAAACGGCTATACCTCTCCTCTCGCCGTTAGCTCTTTCTCCTGAAT 297
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 263 CGGCGAATAACTGGAATACGGCTATACCTCTCCTCTCGCCGTTAGCTCTTTCTCCCGAAT 322
Query 298 CATCACCGGTCGAACAACCACCGGTTGAGAA---TCAGACCACGGCGAAGGCGGTTGAGA 354
|||||||||| || ||||||||||||||||| |||| | |||||| |||||||||||
Sbjct 323 CATCACCGGTAGACCAACCACCGGTTGAGAAAAATCAGTCGACGGCGGTGGCGGTTGAGA 382
Query 355 AAACGCCGGTTTTCAAGAAATGGCAGCATCCGGCGGCGCCGTTCTATTACGAGTCATCGA 414
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 383 AAACGCCGGTTTTCAAGAAATGGCAACATCCCGCGGCGCCGTTTTATTACGAGTCATCGA 442
Query 415 CGTTTGTTCCACCGTTTGTTCCGGTTTAGTATTGGTTTAGAGATCCAACGGCTCAAAAGT 474
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 443 CGTTTGTTCCACCGTTTGTTCCGGTTTAGTATTGGTTTAGAGATCCAACGGTTCAAAAGT 502
Query 475 ACAGTTTGTTTGTTTTATTTGGTTCTGTGTAGATCTAACGGCCCAGAAAACGCGTTTTGT 534
|||||||||||||||| || | |||| |||||||||||||||||||||||||||||||||
Sbjct 503 ACAGTTTGTTTGTTTT-TT-GATTCTATGTAGATCTAACGGCCCAGAAAACGCGTTTTGT 560
Query 535 GCGTTTTTACTATTTTGTGGTTGGAACAAACGCGATTTTCGTATAGAATTTTAATAAATA 594
|||||| |||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 561 GCGTTTCTACTATTTTGTGGTTGGAACAAACTCGATTTTCGTAAAGAATTT-AATAAATC 619
Query 595 AAAAGATTGTTAAATTAATAAGCATGTTTCTGTTACTGGTTTTGT--GGTCCGAAACATA 652
|||||||| ||||||||||||||||||||||||||||| |||| | ||||||||| ||
Sbjct 620 AAAAGATTATTAAATTAATAAGCATGTTTCTGTTACTGTTTTTATATGGTCCGAAATGTA 679
Query 653 AAAGCTAAAGTCCAATTTAATTATTGTGGATGTTTCTGCGTATAAGTGTAACGTTGTCGA 712
||||||||||||||||||| ||||||||||||||| || |||| |||||||||||| ||
Sbjct 680 AAAGCTAAAGTCCAATTTAGTTATTGTGGATGTTTATGTATATA-GTGTAACGTTGT-GA 737
Query 713 AATGTGTGGACACAAGGTTAATG 735
|||||||| ||||||| ||||||
Sbjct 738 AATGTGTGAACACAAGATTAATG 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5