BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479835
Length=1190
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH) D... 1500 0.0
AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH) ... 298 9e-80
> AT3G23210.1 | Symbols: bHLH34 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr3:8283090-8285081 REVERSE
LENGTH=1294
Length=1294
Score = 1500 bits (812), Expect = 0.0
Identities = 1019/1118 (91%), Gaps = 17/1118 (2%)
Strand=Plus/Plus
Query 85 TGTTATTCTTCTGATGTATCAATCAATTGACGACGATGATGATCTTCTCGCTGCTCTTTG 144
|||| ||||||||||||||| |||||| || |||||||||||||||||||||||||||||
Sbjct 154 TGTTCTTCTTCTGATGTATCCATCAATCGAAGACGATGATGATCTTCTCGCTGCTCTTTG 213
Query 145 TTTTGATCAAAGCAATGGAGTAGTAGATCCTTATGCATATATTCAGACAAATGAGGATAA 204
||||||||||||||||||||||| ||||||||||| |||||| || |||||||| |||||
Sbjct 214 TTTTGATCAAAGCAATGGAGTAGAAGATCCTTATGGATATATGCAAACAAATGAAGATAA 273
Query 205 CATCTTTCAGGATTTTGGGTCCTGTGGTTTGAATCT-A--CAGTCACAACAACAACAATT 261
||| ||||||||||||||||| |||||| ||||||| | ||| |||||||| |||||||
Sbjct 274 CATATTTCAGGATTTTGGGTCTTGTGGTGTGAATCTGATGCAGCCACAACAAGAACAATT 333
Query 262 TGATTCTTTTAGTGGAAATCTTGAACAAG-TT-T-GTAGCTTTAGAGG-GGAAAACAATG 317
||||||||||| |||||||||||| |||| || | ||||||||||||| || ||||||||
Sbjct 334 TGATTCTTTTAATGGAAATCTTGAGCAAGTTTGTAGTAGCTTTAGAGGAGG-AAACAATG 392
Query 318 GAGTTGTTTATAGTAGTAGCATTGGATCAGCACAATTGGATTTGGCTGCATCGTTTAGTG 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GAGTTGTTTATAGTAGTAGCATTGGATCAGCACAATTGGATTTGGCTGCATCGTTTAGTG 452
Query 378 GAGTTTTGCAGCAAGAGACTCATCAAGTTTGTGGCTTTAGAGGACAAAACGACGATTCTG 437
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 453 GAGTTTTGCAGCAAGAGACACATCAAGTCTGTGGCTTTAGAGGACAAAACGACGATTCTG 512
Query 438 CAGCGAATCATTTGGAGCAGGAACAAGGACAAGTGTGTAGCGGTGTAGTGGAAATCAATT 497
||| | ||||||| ||||| |||||||||| |||| ||| |||||||||||||||||||
Sbjct 513 CAGTGCCTCATTTGCAGCAGCAACAAGGACAGGTGTTTAGTGGTGTAGTGGAAATCAATT 572
Query 498 CTTCGTCGTCGGTTGGAGGTGTTAAGGATGAGTTAGAACATGGAT-TATCTATTAACAGG 556
||||||| || ||||||| ||||||||| ||||| || | | || | || || |||
Sbjct 573 CTTCGTCATCTGTTGGAGCTGTTAAGGAAGAGTTTGAGGAAGAATGT-TCGGGGAAGAGG 631
Query 557 GGACGAAATGGATCATGTAACAAGCCAGGAACCAAAGCCTGTCGTGAGAAACTAAGAAGG 616
|||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 632 AGACGAACTGGATCATGTAGCAAGCCAGGAACCAAAGCCTGTCGCGAGAAACTAAGAAGG 691
Query 617 GAAAAGCTAAATGACAAGTTCATGGACTTGAGCTCTGTTTTGGAGCCTGGCAGGAATCCA 676
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 692 GAAAAGCTAAATGACAAGTTCATGGACTTGAGCTCTGTTTTAGAGCCTGGCAGGACTCCA 751
Query 677 AAGACGGATAAATCAGCTATACTCGATGATGCAATCCGGGTTGTGAATCAGCTCAGAGGT 736
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 752 AAGACGGATAAATCAGCTATACTCGACGATGCAATCCGGGTTGTGAATCAGCTTAGAGGT 811
Query 737 GAAGCTCATGAGCTTAAAGAAACCAACCAGAAGCTTCTGGAAGAGATCAAGAATCTAAAG 796
||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |||||||
Sbjct 812 GAAGCTCATGAGCTTCAAGAAACCAACCAAAAGCTTCTAGAAGAGATCAAGAGTCTAAAG 871
Query 797 GCGGAGAAAAACGAGTTACGGGAGGAAAAGCTGGTGTTGAAGGCGGATAAGGAGAAGATG 856
||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 872 GCGGATAAAAACGAGCTACGAGAGGAAAAGCTGGTGTTGAAGGCGGAGAAGGAGAAGATG 931
Query 857 GAGCAACAGTTGAAATCTATGGCGTTTCCATCACCGGGTTTCATGCCCTCACAGCATCCA 916
||||||||||| |||||||||| | |||||||||| |||||||||||||| |||||||||
Sbjct 932 GAGCAACAGTTAAAATCTATGGTGGTTCCATCACCAGGTTTCATGCCCTCCCAGCATCCA 991
Query 917 GCAGCTTTCCA-TCCCAATAATATGTCGGTTTATT-CGGGTTACAGTTACTATCCTCCAA 974
||||||||||| |||| |||| ||| |||| || | |||| | |||||||||||||
Sbjct 992 GCAGCTTTCCATTCCC-ATAAGATGGCGGTGGCTTAC-CCTTACGGCTACTATCCTCCAA 1049
Query 975 ACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGTCTCGTGATCACAAAA 1034
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1050 ACATGCCAATGTGGTCACCCTTACCTCCTGCTGACCGTGATACGTCTCGTGATCTCAAAA 1109
Query 1035 ATCTTCCTCCTGTTGCTTAATCAGCTTTC-TGTTGATTAATCAATGATCATAACTATCAA 1093
|||||||||||||||||||||| ||| | |||||||| |||| ||||||| ||||||
Sbjct 1110 ATCTTCCTCCTGTTGCTTAATCTTCTT-CATGTTGATTCATCATTGATCATTGTTATCAA 1168
Query 1094 TCGCTTAGGAATTTTTGTTCCTTCAGATGATTCTTTA-TCAGTAGTTTTACAGTAACCAT 1152
|| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1169 TCCCTTAGGAATTTTTGTTCCTTCAGATGATTCTTTAATCAGTAGTTTTGCAGTAACCAT 1228
Query 1153 TGGGAGATTAGAGAATTTTTTGATTTGAATAAAATGTC 1190
| ||||||||||||||||| ||||||||||||||||||
Sbjct 1229 TTGGAGATTAGAGAATTTTATGATTTGAATAAAATGTC 1266
> AT4G14410.1 | Symbols: bHLH104 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:8299759-8301667 FORWARD
LENGTH=1334
Length=1334
Score = 298 bits (161), Expect = 9e-80
Identities = 316/389 (81%), Gaps = 17/389 (4%)
Strand=Plus/Plus
Query 583 AGGAACCAAAGCCTGTCGTGAGAA-ACTAAGAAGGGAAAAGCTAAATGACAAGTTCATGG 641
|||||| ||||| |||||||| || | || ||||| ||||||||||| | ||| ||||
Sbjct 714 AGGAACTAAAGCGTGTCGTGA-AAGGTTGAGGAGGGAGAAGCTAAATGAGAGGTTTATGG 772
Query 642 ACTTGAGCTCTGTTTTGGAGCCTGGCAGGAATCCAAAGACGGATAAATCAGCTATACTCG 701
| |||||||| |||||||||||||| |||| ||| ||||| |||||| | ||||||||||
Sbjct 773 ATTTGAGCTCGGTTTTGGAGCCTGGGAGGACTCCTAAGACTGATAAACCGGCTATACTCG 832
Query 702 ATGATGCAATCCGGGT-TGTGAATCAGCTCAGAGGTGAAGCTCATGAGCTTAAAGAAACC 760
||||||||||||| | | ||||||| || |||| |||||||| | ||||| |||||||
Sbjct 833 ATGATGCAATCCGTATAT-TGAATCAACTTAGAGATGAAGCTCTTAAGCTTGAAGAAACT 891
Query 761 AACCAGAAGCTTCTGGAAGAGATCAAGAATCTAAAGGCGGAGAAAAACGAG-TTACGGGA 819
|||||||||||| | || |||||||||| ||| ||||||||||| |||||| | | ||||
Sbjct 892 AACCAGAAGCTTTTAGAGGAGATCAAGAGTCTCAAGGCGGAGAAGAACGAGCTGA-GGGA 950
Query 820 GGAAAAGCTGGTGTTGAAGGCGGATAAGGAGAAGATGGAGCAACAGTTGAAA-TCTATGG 878
||||||||||||||||||||||||||| ||||||| || |||||||| ||| ||||||
Sbjct 951 GGAAAAGCTGGTGTTGAAGGCGGATAAAGAGAAGACAGAACAACAGTT-AAAGTCTATGA 1009
Query 879 CGTTTCCATCACC-GGGTTTCATGCCCTCACAGCATCCAGCAGC-TTTCCATCC-CAATA 935
|| |||||| | ||||| ||| || ||| | |||||| || ||| | || ||| |
Sbjct 1010 CGGCTCCATCTTCAGGGTT-CATACC-TCATAT--TCCAGCTGCATTTA-A-CCACAACA 1063
Query 936 ATATGTCGGTTTATTCGGGTTACAGTTAC 964
| ||| | |||||| | ||||| |||||
Sbjct 1064 AAATGGCTGTTTATCCAAGTTACGGTTAC 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58433434380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5