BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479840
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23255.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 994 0.0
> AT3G23255.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown. | chr3:8311722-8313125
FORWARD LENGTH=929
Length=929
Score = 994 bits (538), Expect = 0.0
Identities = 675/740 (91%), Gaps = 13/740 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGAGAGATTTTTCCCGACGAAGCGGAGCTCCGGCGACGGA-AATTGCCGGC-GGG 58
||||| |||||||| ||||||||||||||||||||||||||| || ||| ||| | |||
Sbjct 74 ATGGTAGAGAGATTCTTCCCGACGAAGCGGAGCTCCGGCGAC-GAGAATCACCGTCGGGG 132
Query 59 ATAAACTAACTCTCCTCTCCGGTCCAATTTCGTCAGGCAAAACCTCTCTACTCTTCCAAT 118
| || || | || ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 133 A-AATCTCTCGCTTCTCTCCGGTCCAATTTCCTCAGGCAAAACCTCTCTGCTCTTCCAAT 191
Query 119 TCGCTCTCAATGTAGCGAGTGCTTCTTCAAACAATCGTGTCGTCTTCATCTGTCACCGGA 178
| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 192 TAGCTCTCAATGTAGCGAGTGCTTCTACAACCACTCGTGTCGTCTTCATCTGTCACCGGA 251
Query 179 AAAGAATTGAATCCAATCCTCCGTTTCTCTCTCAGGGAATCGATCCTTCCTCTGATGTAT 238
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AAAAAATCGAATCCAATCCTCCGTTTCTCTCTCAGGGAATCGATCCTTCCTCTGATGTAT 311
Query 239 TCAATCGAATTCAGATGAAATATGTGGATGATGATGAAGGAATCAGGAAATACTTTGCTG 298
|||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 312 TCAATCGAATCCAGATTAAATATGTAGATGATGATGAAGGAATCAGAAAATACTTTGCTG 371
Query 299 CGTTTCATCTTCATCGTGTTGATGATTTTCCAAATGCGGTTATAATCGATGATTTCGGCG 358
||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||| || |
Sbjct 372 CGTTTCATCTTCATCATGTTGATGATTTACCATCTGCAGTTATAATCGATGATTTTGGTG 431
Query 359 ATTACTTTAGTC-AATTGAACTCGATGATGAATTCTCGGGCTAGAGACATGGCGATGGTT 417
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 432 ATTACTTTAG-CAAATTGAACTCGGTGATGAATTCTCGGGCTAGAGACATGGCGATGGTT 490
Query 418 CGGACTCTTGCTCTATGCCACAATGCTATAGCTGATGCTAA--GCAA-GCTTTTTGTGAG 474
||||||||||||||||||||||||||||||| ||||||||| | || ||||| || |||
Sbjct 491 CGGACTCTTGCTCTATGCCACAATGCTATAGTTGATGCTAATAGGAAAGCTTTGTGCGAG 550
Query 475 CTTGTATTGTCTGAGACTAACCATGGAGACTCTCCGAGGTCGTTGTTTATATACAAACGA 534
||||| || |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 551 CTTGTCTTATCTGAGACTAACCATGGAGACTCTCCGAGGTCGTTGTTCATCTACAAACGA 610
Query 535 TGGATCCCGAAGATCTTTACGATAAAAGGTCATGGTGATGGATCGTTTCTCTTGACAAGT 594
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 611 TGGATTCCGAAGATCTTTACTATAAAAGGTCATGGTGATGGATCGTTTCTATTGACAAGT 670
Query 595 AATGGTACATCCGAGAAAAGCGCCAAGTATTCGATCGCGCTGCAATATCTCATCTTGGAG 654
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 AATGATACATCCGAGAGAAGCGCCAAGTATTCGATCGCGCTGCAATATCTCATCTTGGAG 730
Query 655 CAGATGATTGATAGTTA-TTAGTTCACTGAGAAGAGTATCTCCTTA-TGAAAAGTTCTGT 712
||||| |||||| | || |||||| || ||| |||||||| ||| | ||| |||||||||
Sbjct 731 CAGATTATTGAT-GATAGTTAGTTAACAGAGGAGAGTATCCCCT-AGTGACAAGTTCTGT 788
Query 713 TTTTATGATATTTTTGTCAA 732
||||| |||||||| |||||
Sbjct 789 TTTTAAGATATTTTAGTCAA 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37123034633
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5