BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479849 Length=1694 Score E Sequences producing significant alignments: (Bits) Value AT3G23340.1 | Symbols: ckl10 | casein kinase I-like 10 | chr3:8... 2396 0.0 AT4G14340.1 | Symbols: CKI1, CKL11 | casein kinase I | chr4:824... 1160 0.0 > AT3G23340.1 | Symbols: ckl10 | casein kinase I-like 10 | chr3:8350803-8353959 FORWARD LENGTH=1741 Length=1741 Score = 2396 bits (1297), Expect = 0.0 Identities = 1610/1750 (92%), Gaps = 66/1750 (4%) Strand=Plus/Plus Query 1 AAATAAATAACATCCGTCAAAACCATCTGTCTCTG-TTTCTCTTTCGTCTCCTCTACTTC 59 ||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||| Sbjct 1 AAATAAATAACATCCGTCAAAACCATCTGTCTCTGTTTTCTCATTCATCTCCTCTACTTG 60 Query 60 TCCAGTCGGTCATCAAACCATTTCTTCAAGATTATCCTCAGAAAATATAGAAACTCCTCA 119 | ||||||||||||||| || |||||||| |||||||||| ||||||| |||||||||| Sbjct 61 TTTAGTCGGTCATCAAACTATCTCTTCAAGTTTATCCTCAG-AAATATACAAACTCCTCA 119 Query 120 GAAAATTCTTTCTGAACTTGGGTTTAGCTTCATTTTACTATTTTGTAATGATGATAATG- 178 |||||||||||| | || ||||| ||||| || ||| |||||||| |||||| |||| Sbjct 120 GAAAATTCTTTC-G---TTTGGTTT-GCTTCGTTCTACAATTTTGTATTGATGAGAATGT 174 Query 179 ----TT-A-T-ATTAA--G--TG------C-----T---T-TGTAATTAGTATTTATTGG 212 || | | ||||| | || | | | ||||| ||||||||||||| Sbjct 175 TATATTGAGTCATTAACCGTTTGATAAATCGTATTTGGCTCTGTAAGTAGTATTTATTGG 234 Query 213 AATCGAAACGATGGATCATGTATTCGGTGGCAAGTTCAAGTTAGGTAGAAAGATTGGTAG 272 || |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 235 TATTGAAACGATGGATCATGTAATCGGTGGCAAGTTCAAGTTAGGTAGGAAGATTGGTAG 294 Query 273 TGGATCATTTGGTGAACTTTATATAGGGATTAATGTTCAAACTGGAGAAGAAGTTGCTCT 332 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 295 TGGATCATTCGGTGAACTTTATATTGGGATTAATGTTCAAACTGGAGAAGAAGTTGCTCT 354 Query 333 TAAACTGGAACCTGTGAAGACAAAGCATCCTCAGCTCCATTATGAATCAAAAGTATACAT 392 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 TAAGCTGGAACCTGTGAAGACAAAGCATCCTCAGCTCCATTATGAATCAAAAGTATACAT 414 Query 393 GCTTCTTCAAGGAGGGACGGGTGTTCCGCATCTCAAATGGTTCGGTGTTGAGGGGAATTA 452 ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || Sbjct 415 GCTTCTTCAAGGAGGGACGGGTGTTCCGCATATCAAATGGTTCGGTGTTGAGGGTAACTA 474 Query 453 CAATTGTATGGCTATTGACCTTCTTGGTCCAAGCTTGGAAGACTTGTTCAACTATTGCAC 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 CAATTGTATGGCTATTGACCTTCTTGGTCCAAGCTTGGAAGACTTGTTCAACTATTGCAC 534 Query 513 TCGGAATTTTTCTTTGAAAACTGTTCTAATGCTTGCTGATCAGTTAATAAACAGAGTTGA 572 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 535 TCGGAGTTTTTCTTTGAAAACTGTTCTAATGCTTGCTGATCAGTTAATAAACAGAGTTGA 594 Query 573 GTATATGCATTCTCGAGGATTTCTTCACCGTGATATTAAACCGGACAACTTTTTGATGGG 632 ||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 595 GTACATGCACTCTCGAGGATTTCTTCACCGTGATATTAAACCGGATAACTTTTTGATGGG 654 Query 633 TCTCGGTCGCAAAGCAAACCAGGTGTACATTATTGATTATGGGCTTGCTAAAAAGTATAG 692 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 655 TCTCGGTCGCAAAGCAAACCAAGTGTACATTATTGATTATGGGCTTGCTAAAAAGTATAG 714 Query 693 AGATCTTCAGACACACAAGCATATACCCTACAAGGAAAATAAGAATCTGACTGGAACTGC 752 ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 715 AGATCTTCAGACACACAAGCATATACCTTACAGGGAAAATAAGAATCTGACTGGAACTGC 774 Query 753 TCGGTATGCAAGTGTCAACACACACCTTGGGATTGAGCAAAGTAGGCGAGATGATCTGGA 812 | |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 775 TAGGTATGCAAGTGTCAACACACACCTTGGCATTGAGCAAAGTAGACGAGATGATCTGGA 834 Query 813 GTCTCTTGGCTATGTGT-TGATGTATTTTCTACGAGGAAGTCTACCATGGCAAGGTCTAA 871 ||||||||| ||||| | ||||||||||| ||||||||||| |||||||||||||||||| Sbjct 835 GTCTCTTGGTTATGT-TCTGATGTATTTTATACGAGGAAGTTTACCATGGCAAGGTCTAA 893 Query 872 AAGCTGGTACCAAGAAACAGAAATATGAAAAGATTAGTGAAAAGAAGATGCTTACTCCAG 931 |||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| | Sbjct 894 AAGCTGGTACTAAGAAACAGAAATACGAGAAGATAAGTGAAAAGAAGATGCTTACTCCCG 953 Query 932 TAGAGGTTCTTTGTAAGTCATTTCCATCAGAGTTCACATCATATTTCCATTACTGTCGAT 991 ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| || | Sbjct 954 TAGAGGTTCTTTGCAAGTCATATCCATCCGAGTTCACATCATATTTCCATTACTGCCGTT 1013 Query 992 CATTGAGGTTTGAGGATAAACCAGATTATTCATATCTAAAAAGACTTTTCAGAGACCTTT 1051 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1014 CATTGAGGTTTGAGGATAAACCAGATTATTCATATCTGAAAAGACTTTTCAGGGACCTTT 1073 Query 1052 TTATTCGGGAAGGTTATCAGTTTGACTATGTGTTTGATTGGACAATCTTGAAATATCCTC 1111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 TTATTCGGGAAGGTTATCAGTTTGACTATGTGTTTGATTGGACAATCTTGAAATATCCTC 1133 Query 1112 AGAGTGGCTCTATTTCGAAACCAAGGCCAAATCCAAAACCAGCTCTAGACCCTCCAGGAC 1171 |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1134 AGAGTGGCTCTATTTCAAAACCAAGGCCAAATCCTAAACCAGCTCTAGACCCTCCAGGAC 1193 Query 1172 CATCTGCGGAACGAAATGAAAAGCCTATAGTGGGGCAGGATCTGCGAGAAAGATTCTCAG 1231 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1194 CATCTGCAGAACGAAATGAAAAGCCTATAGTGGGGCAGGATCTACGAGAAAGATTCTCAG 1253 Query 1232 GTGCAGTTGAAGCATTCGCTAGACGGAATGTAACGAGTCATGGTATTCGCCCTAAGCACA 1291 ||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||||| Sbjct 1254 GTGCAGTTGAAGCATTCGCTAGACGAAATGTACCGAGTCATGGCATTCGCCCGAAGCACA 1313 Query 1292 TTTTTTCTGATGATGCTTCCAAAGAAGTGCAAGTGTCTGAAAAAGCCCGAAATGAGATTG 1351 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1314 TTTTTTCTGATGATGCTTCCAAAGAAGTGCAAGTGTCTGAAAAAACCCGAAATGAGATTG 1373 Query 1352 CTACAAAGATGGCAGTGATGTCAAGCAGCCAACCTGGCTCATCAGGTGAGCTTAGTGAAA 1411 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | Sbjct 1374 CTACAAAGATGGCAGTGATGTCTAGCAGCCAACCTGGCTCATCAGGTGAGCTGAGTGAGA 1433 Query 1412 ACCGCTCAAGTAAACTTTTTACAAGCGGTGCCCAAAAGATTCAACCGG-GTCAAGAAACT 1470 |||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||||||| Sbjct 1434 ACCGCTCAAGTAAACTTTTTTCAAGCAGTGCCCAAAAGATTCAACCGGTG-CAAGAAACT 1492 Query 1471 AAGTCATCCACAAGGCTTGGGCGTGATGACGGCCTGAGAAGCTTCGATATGCTTACTATC 1530 |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1493 AAGTTATCTGCAAGGCTTGGGCGTGATGACGGCCTGAGAAGCTTCGATATGCTTACTATC 1552 Query 1531 GGTTCTGGAAAGCGGAAATGAGT-A-----G-----TT-----T-G-A------AAGAAT 1566 ||||| ||||||||||||||||| | | || | | | |||||| Sbjct 1553 GGTTCCGGAAAGCGGAAATGAGTCACTCAAGAAAGCTTGCGGATCGGAGTTTGGAAGAAT 1612 Query 1567 CTGAAAATGTGTAAACAATGAAAAACTCTGTCTCCCGCTTT--GTGTTTATAGTTGTTCA 1624 |||||||||||||||||||| |||||| ||||||| |||| |||||||||||| |||| Sbjct 1613 CTGAAAATGTGTAAACAATGTAAAACT--GTCTCCCACTTTATGTGTTTATAGTTCTTCA 1670 Query 1625 TAAAATTTTATAAAGTTGTATATGTAACTTGTAACACAAGTACTTTGTTTATATTAGTTC 1684 || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1671 TAGAATTTTATAAAGTGGTATATGTAACTTGTAACACAAGTACTTTGTTTATATTAGTTC 1730 Query 1685 AAATTTGGTC 1694 |||||||||| Sbjct 1731 AAATTTGGTC 1740 > AT4G14340.1 | Symbols: CKI1, CKL11 | casein kinase I | chr4:8248286-8251998 REVERSE LENGTH=1950 Length=1950 Score = 1160 bits (628), Expect = 0.0 Identities = 919/1060 (87%), Gaps = 17/1060 (2%) Strand=Plus/Plus Query 211 GGAATCGAAACGATGGATCATG-TATTCGGTGGCAAGTTCAAGTTAGGTAGAAAGATTGG 269 |||||| ||| ||||||||| | || |||| || ||||| ||||| ||||| ||| |||| Sbjct 338 GGAATC-AAAAGATGGATCACGTTA-TCGGCGGGAAGTTTAAGTTGGGTAGGAAGCTTGG 395 Query 270 TAGTGGATCATTTGGTGAACTTTATATAGGGATTAATGTTCAAACTGGAGAAGAAGTTGC 329 ||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||| || Sbjct 396 AAGTGGATCATTCGGTGAACTTTATTTAGGGATCAATATTCAAACTGGAGAAGAAGTCGC 455 Query 330 TCTTAAACTGGAACCTGTGAAGACAAAGCATCCTCAGCTCCATTATGAATC-AAAAGTAT 388 |||| ||||||||||||||||| | ||||||||| || || |||||||| |||| ||| Sbjct 456 AGTTAAGCTGGAACCTGTGAAGACGAGGCATCCTCAACTGCAGTATGAATCGAAAA-TAT 514 Query 389 ACATGCTTCTTCAAGGAGGGACGGGTGTTCCGCATCTCAAATGGTTCGGTGTTGAGGG-G 447 | ||| ||||||||||||| ||||||||||| ||||| |||||||| || |||||||| | Sbjct 515 ATATGTTTCTTCAAGGAGGAACGGGTGTTCCCCATCTGAAATGGTTTGGAGTTGAGGGTG 574 Query 448 AATTACAATTGTATGGCTATTGACCTTCTTGGTCCAAGCTTGGAAGACTTGTTCAACTAT 507 || |||| ||| |||| ||| || |||||||| ||||||||||| ||||| ||||| || Sbjct 575 AA-TACAGTTGCATGGTTATCGATCTTCTTGGGCCAAGCTTGGAGGACTTATTCAATTAC 633 Query 508 TGCACTCGGAAT-TTTTCTTTGAAAA-CTGTTCTAATGCTTGCTGATCAGTTAATAAACA 565 |||| | |||| ||||| || |||| ||||| |||||||||| ||||| || ||| | Sbjct 634 TGCAAGC-GAATATTTTCATT-AAAATCTGTTTTAATGCTTGCAGATCAATTGATATGTA 691 Query 566 GAGTTGAGTATATGCATTCTCGAGGATTTCTTCACCGTGATATTAAACCGGACAACTTTT 625 ||||||||||||||||||| || || ||||||||||| ||||||||||| |||||||||| Sbjct 692 GAGTTGAGTATATGCATTCGCGGGGTTTTCTTCACCGCGATATTAAACCAGACAACTTTT 751 Query 626 TGATGGGTCTCGGTCGCAAAGCAAACCAGGTGTACATTATTGATTATGGGCTTGCTAAAA 685 |||||||||| || |||| ||||||||||||||| || ||||||||||| |||||||||| Sbjct 752 TGATGGGTCTTGGGCGCAGAGCAAACCAGGTGTATATCATTGATTATGGCCTTGCTAAAA 811 Query 686 AGTA-TAGAGATCTTCAGACACACAAGCATATACCCTACAAGGAAAATAAGAATCTGACT 744 | || || |||||||||||||| ||||||||||| |||| |||||| |||||||| || Sbjct 812 AATACAAG-GATCTTCAGACACAAAAGCATATACCATACAGGGAAAACAAGAATCTTACA 870 Query 745 GGAACTGCTCGGTATGCAAGTGTCAACACACACCTTGGGATTGAGCAAAGTAGGCGAGAT 804 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 871 GGAACTGCTCGGTATGCAAGTGTGAACACACACCTTGGGATTGAGCAAAGTAGAAGAGAT 930 Query 805 GATCTGGAGTCTCTTGGCTATGTGTTGATGTATTTTCTACGAGGAAGTCTACCATGGCAA 864 ||||||||||| ||||| |||||||||||||||||||||||||||||||| || |||||| Sbjct 931 GATCTGGAGTCACTTGGTTATGTGTTGATGTATTTTCTACGAGGAAGTCTTCCGTGGCAA 990 Query 865 GGTCTAAAAGCTGGTACCAAGAAACAGAAATATGAAAAGATTAGTGAAAAGAAGATGCTT 924 ||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| Sbjct 991 GGTTTAAAAGCTGGTACGAAGAAGCAGAAATATGACAAGATTAGTGAAAAGAAGATGCTT 1050 Query 925 ACTCCAGTAGAGGTTCTTTGTAAGTCATTTCCATCAGAGTTCACATCATATTTCCATTAC 984 ||| | |||||| |||||| ||||| | |||||||||||||||||| || ||||||||| Sbjct 1051 ACTTCTGTAGAGACTCTTTGCAAGTCGTATCCATCAGAGTTCACATCGTACTTCCATTAC 1110 Query 985 TGTCGATCATTGAGGTTTGAGGATAAACCAGATTATTCATATCTAAAAAGACTTTTCAGA 1044 ||||| |||||||| |||||||| ||||| |||||||||||||| | ||||||||| || Sbjct 1111 TGTCGTTCATTGAGATTTGAGGACAAACCGGATTATTCATATCTGAGAAGACTTTTTAGG 1170 Query 1045 GACCTTTTTATTCGGGAAGGTTATCAGTTTGACTATGTGTTTGATTGGACAATCTTGAAA 1104 || ||||| ||||| |||||||||||| |||| |||||||||||||||||||||| ||| Sbjct 1171 GATCTTTTCATTCGTGAAGGTTATCAGCTTGATTATGTGTTTGATTGGACAATCTCGAAG 1230 Query 1105 TATCCTCAGAGTGGCTCTATTTCGAAACCAAGGCCAAATCCAAAACCAGC-TCTAGACCC 1163 |||||||||| |||||||| ||||| ||||||||||| ||||| |||||| | | ||||| Sbjct 1231 TATCCTCAGATTGGCTCTAGTTCGAGACCAAGGCCAACTCCAAGACCAGCGT-TGGACCC 1289 Query 1164 TCCAGGACCATCTGCGGAACGAAATGAAAAGCCTATAGTGGGGCAGGATCTGCGAGAAAG 1223 |||||||||| |||| ||| || ||||||||||| ||| || ||||| ||||||| ||| Sbjct 1290 TCCAGGACCACCTGCAGAAAGAGCTGAAAAGCCTACAGTCGGACAGGACCTGCGAGGAAG 1349 Query 1224 ATTCT-CAGGTGCAGTTGAAGCATTCGCTAGACGGAATGT 1262 ||| | |||||||| |||| |||||| | ||||| ||||| Sbjct 1350 ATT-TACAGGTGCAATTGAGGCATTCACCAGACGAAATGT 1388 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83734509060 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5