BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479855
Length=2359
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23410.1 | Symbols: ATFAO3, FAO3 | fatty alcohol oxidase 3 |... 3408 0.0
> AT3G23410.1 | Symbols: ATFAO3, FAO3 | fatty alcohol oxidase 3
| chr3:8382805-8386148 FORWARD LENGTH=2420
Length=2420
Score = 3408 bits (1845), Expect = 0.0
Identities = 2169/2325 (93%), Gaps = 23/2325 (1%)
Strand=Plus/Plus
Query 1 TCTTAAGAACTTTCCCAGTTTTGtttttttATCGTATTAAAGCGAATTGTGTGATGGGTA 60
||||||||||||||||||||||||||||| ||| ||| ||||| || |||||||||| ||
Sbjct 3 TCTTAAGAACTTTCCCAGTTTTGTTTTTTAATCATATCAAAGCAAACTGTGTGATGGATA 62
Query 61 AGTACAAAGTCGCCGGAAAATTTGGCCTCCGGGACATCACGGAGGCAGAGATGGAATCTT 120
||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 63 AGTACAAAGTCGCCGGAAAATTTGGTCTCCCGGACATCACGGTGGCAGAGATGGAATCTT 122
Query 121 TAGCTAGCTTTTGTGAAGCTGTCTTGCCTCCTGTGCTG---CCGCCGGAAGAAG-TTTCC 176
||||||||||||||||||||||||||||| | |||| | |||||||||| || |||||
Sbjct 123 TAGCTAGCTTTTGTGAAGCTGTCTTGCCTTCAGTGCAGCCACCGCCGGAAG-AGCTTTCC 181
Query 177 AGCGAAGGTGATAACCACCGGAACAAAGAGGCTCTCCGGTCATTTTACTCAACTTCTGGG 236
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GGTGAAGGTGATAACCATCGGAACAAAGAGGCTCTCCGGTCATTTTACTCAACTTCTGGG 241
Query 237 TCTCAAACTCCTGTCCTTCGCCAGAGCATTGAGCTGATCACGAAACGAGGGACAATAGAA 296
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 242 TCTAAAACTCCTGTCCTTCGCCAGAGCATTGAGCTGGTCACGAAACGAGGGACAATAGAA 301
Query 297 GCTTATCTTGCTACTAGGCTCATATTGTTCTTGCTTGCGACTCGGCTTGGTAC-CTTGCT 355
|||||| ||||||||||||| ||||||||||||||||| ||||||||||| || ||| ||
Sbjct 302 GCTTATATTGCTACTAGGCTTATATTGTTCTTGCTTGCTACTCGGCTTGGGACGCTT-CT 360
Query 356 CATTTGTGGAACCGAATGTTTGGTCTCGAGATGGCCTTTTGTTGAGAAATTCAGTGAGCT 415
||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 361 CATTTGTGGAACCGAGTGTTTGGTCTCAAGATGGCCTTTTGTCGAGAAATTTAGTGAGCT 420
Query 416 CTCGTTGGAGAAGAGAGAAAGAGTACTTCAGAAACAATTC-AGAAATTGGATTTTGACTC 474
|||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 421 CTCGTTGGAGAAGAGAGAAAGAGTACTTCAGAAACAATTCAAG-AATTGGATTCTGACTC 479
Query 475 CAATTAGAGCTGCTTTTGTCTACATCAAAGTTGCATTCCTCTTCTGTTTCTTCTCTCGGG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 480 CAATTAGAGCTGCTTTTGTCTACATCAAAGTTGCATTCCTCTTCTGTTTCTTCTCCCGGG 539
Query 535 TGACTCCAAATGGCGAAAACCCGGCATGGGAAGCCATAGGGTATCGTGTTAACCTCGATG 594
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 TGAATCCAAATGGCGAAAACCCGGCATGGGAAGCCATAGGGTATCGTGTTAACCCCGATG 599
Query 595 AGAACAAACCTTCTGCAACTCATAAGGAAAGACCTCTTGAGAAAGGGATAGTGGAGACGA 654
||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 600 AGAACAAACCTTCTGAAACTCATAACGAAAGACCACTTGAGAAAGGGATAGTGGAGACGA 659
Query 655 TGGAAGAAACAGAGCAGACTCTTCTTGAATCACTTGCTCATAAAGGCCTAGAAGCGGACC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 TGGAAGAAACAGAGCAGACTCTTCTTGAATCACTTGCTCATAAAGGCCTAGAAGCGGTTC 719
Query 715 TTGACACGGTCCATGATGCGATCAGAATCAAATGTGATGCTGTGGTGGTAGGGTCTGGTT 774
||||||||| ||||||||||||||||| |||||||||| |||||| || ||||||||||
Sbjct 720 TTGACACGGAGCATGATGCGATCAGAATAAAATGTGATGTTGTGGTCGTCGGGTCTGGTT 779
Query 775 CAGGGGGAGGCGTGGCGGCTTCTGTTCTAGCGAAATCTGGTTTAAAAGTGGTTGTTCTTG 834
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CAGGAGGAGGCGTAGCAGCTTCTGTTCTAGCGAAATCTGGTTTAAAAGTGGTTGTTCTTG 839
Query 835 AAAAAGGAAGCTACTTTACGCCTTCTGATTATCGTCCTTTCGAGGGTTCTGGCATGGATA 894
|||||||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||
Sbjct 840 AAAAAGGAAGCTACTTTACGCCTTCTGAACATCGTCCTTTCGAAGGTCCTGGCTTGGATA 899
Query 895 AACTGTATGAAAATGGAGGGATTCTCCCGAGCGTTGATGGGAATCTTATGGTGTTGGCTG 954
|||| || || |||||||||||||||||||| |||||||||| | |||||||||||||||
Sbjct 900 AACTCTACGAGAATGGAGGGATTCTCCCGAGTGTTGATGGGAGTTTTATGGTGTTGGCTG 959
Query 955 GAGCAACTGTAGGCGGTGGATCTGCTGTGAACTGGTCTGCGTGTATCAAAACGCCGAAAT 1014
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 960 GAGCAACTGTAGGTGGTGGATCTGCTGTGAACTGGTCTGCGTGTATCAAAACCCCGAAGT 1019
Query 1015 CGGTACTTCAAGAATGGTCAGAGGATCAAAACATACCTCTTTTCGCTACGAAAGAATATG 1074
|||| |||||||||||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct 1020 CGGTTCTTCAAGAATGGTCAGAGGATCAAAATATACCTCTTTTCGGTACTAAAGAATATC 1079
Query 1075 TTTCGGCTATGGAAGTTGTGTGGGAGAGGATGGGTGTCACGGAGAAATGTGAAATGGAGA 1134
| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1080 TAACGGCTATGGAAGTTGTGTGGAAGAGGATGGGTGTCACGGAGAAATGTGAACTGGAGA 1139
Query 1135 GTTTCCAGAATCAGGTTCTGAGAAAAGGTTGCCAAAATCTCGGGGTT-AATGTCGAAAAC 1193
|||| ||||||||| ||||||||||||||||| |||||||| ||||| ||||| ||||||
Sbjct 1140 GTTTTCAGAATCAGATTCTGAGAAAAGGTTGCGAAAATCTC-GGGTTCAATGTTGAAAAC 1198
Query 1194 GTGCCAAGAAACTCCTCTGAGAGTCATTACTGTGGATCTTGCGGGTATGGATGTATACAA 1253
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1199 GTGCCAAGAAACTCCTCGGAGAGTCATTACTGTGGATCTTGCGGGTATGGATGTAGACAA 1258
Query 1254 GGAGACAAGAAAGGAAGCGACCGGACTTGGCTTGTTGACGCGGTTAGTCACGGCGCCGTG 1313
||||||||||||||||| ||||||||||||||||| || ||||| | ||||| ||||||
Sbjct 1259 GGAGACAAGAAAGGAAGTGACCGGACTTGGCTTGTCGATGCGGTGGGGCACGGTGCCGTG 1318
Query 1314 ATTCTAACGGGATGTAAAGCGGAGAGATTCATACTCGAAAAGAACGGTAGTAACAAAGGA 1373
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ATTCTTACTGGATGTAAAGCGGAGAGATTCATACTCGAAAAGAACGGTAGTAACAAAGGA 1378
Query 1374 GGCAAGCAAATGAAATGTTTGGGAGTGATGGTTAAATCTTTAAACGGAAACATAGCAAAG 1433
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1379 GGCAAGCAAATGAAATGTTTGGGAGTGATGGCTAAATCTTTAAACGGAAACATAGCAAAG 1438
Query 1434 ACGCTAAAGATCGAAGCTAAAGTAACGGTTTCAGCAGGGGGTGCTCTTTTAACACCTCCT 1493
| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 ATGTTAAAGATTGAAGCTAAAGTAACGGTTTCAGCAGGGGGTGCTCTTTTAACACCTCCG 1498
Query 1494 TTGATGATCTCAAGCGGGTTGAGAAACCGACACATCGGTAAAAACCTTCACTTACACCCT 1553
|||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1499 TTGATGATATCTAGCGGGTTGAGAAACCGAAACATCGGTAAAAACCTTCACTTACACCCT 1558
Query 1554 GTTCTAATGGCGTGGGGTTACTTCCCGGTGAAGAAATCTTC---CA--A-TTTCAAGGGA 1607
||| |||||||||||||||||||||||| ||| ||||||| || | ||||||||||
Sbjct 1559 GTTTTAATGGCGTGGGGTTACTTCCCGGACAAGGAATCTTCTAACATCAGTTTCAAGGGA 1618
Query 1608 AAGTCATACGAAGGCGGGATCATAACATCAGTGAGCAAAGTGTTATCCGAAGATTCAGGA 1667
|| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 1619 AATTCATATGAAGGCGGGATCATAACATCAGTGAGCAAAGTGTTATCAGAAGATTCTGAA 1678
Query 1668 GTTAGAGCCATCATTGAGACACCGGC-ACTAGGACCAGGTTCATTCTCGGTTTTATGTCC 1726
|| ||||| ||||| |||||||| || ||||||||||||||| ||||| |||||| |||
Sbjct 1679 GTCAGAGCAATCATAGAGACACC-GCAACTAGGACCAGGTTCGTTCTCCGTTTTAACTCC 1737
Query 1727 TTGGACCTCAGGGCTTGACATGAAGAAGCGAATGGCTAGATACTCAAGAACCGCGAGTCT 1786
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1738 TTGGACCTCTGGGCTTGACATGAAGAAAAGAATGGCTAGATACTCAAGAACCGCGAGTCT 1797
Query 1787 CATAACGATAGTTAGAGATCGCGGGTCAGGAGAAGTTAAAACCGAAGGCAGAATAAGCTA 1846
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1798 CATAACCATAGTTAGAGACCGCGGGTCAGGAGAAGTTAAAACCGAAGGCAGAATAAACTA 1857
Query 1847 CGCCGTGGACAAAACCGATAGAGATAATCTCAAAGCCGGGCTTAGACAGTCGTTGAA-GA 1905
| |||||||||||||||| ||||||||||||||||| ||||||||| ||||| | || ||
Sbjct 1858 CACCGTGGACAAAACCGACAGAGATAATCTCAAAGCTGGGCTTAGAGAGTCGCT-AAGGA 1916
Query 1906 TACTAATAGCAGCTGGAGCAGAGGAAGTAGGAACTCACAGAAGCGACGGGCAGAGACTAA 1965
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1917 TACTAATAGCAGCTGGAGCAGAGGAAGTGGGAACTCACAGAAGCGACGGGCAGAGACTAA 1976
Query 1966 TATGCAAAGGTGTCGATAAGAATTCGATCGAAGAGTTTTTGGACTCGGTGAGTACAGAGG 2025
|||||||||||||| || ||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1977 TATGCAAAGGTGTCAATGAGAATTCGATCCAAGAGTTTTTAGACTCGGTGAGTACAGAGG 2036
Query 2026 AAGGACCAAAGGGGATGACTGAGAAATGGAACGTTTATAGCTCAGCTCATCAGATGGGAA 2085
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 AAGGAGCAAAGGGAATGACTGAGAAATGGAACGTTTATAGCTCAGCTCATCAGATGGGAA 2096
Query 2086 GCTGTAGAATTGGAGAAAATGAAAAAGAAGGTGCAATAGATTTAAATGGAGAGAGTTGGG 2145
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2097 GCTGTAGAATTGGAGAAAATGAAAAAGAAGGTGCAATAGATTTGAATGGAGAGAGTTGGG 2156
Query 2146 AAGCAGAGAAGTTGTTTGTGTGTGATGCAAGTGCGTTGCCTAGTGCTGTTGGTGTTAATC 2205
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 2157 AAGCAGAGAAGTTGTTTGTGTGCGATGCAAGTGCGTTGCCTAGTGCTGTTGGTGTTAACC 2216
Query 2206 CTATGATCACAGTCATGTCTACGGCTTATTGTATCTCCACACGGATCGCTAAGTCCATGA 2265
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2217 CTATGATCACAGTCATGTCTACGGCTTATTGTATCTCCACAAGAATCGCTAAGTCCATGA 2276
Query 2266 CCGCAGGCTTATCTCGTTGAAGTAAAATAACGTATA-TTT-TATT 2308
|| | || ||||||| ||||| |||||||||||||| ||| ||||
Sbjct 2277 CCACTGGTTTATCTCATTGAACTAAAATAACGTATACTTTCTATT 2321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117117871485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5