BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479910
Length=2620
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24190.1 | Symbols: | Protein kinase superfamily protein | ... 4224 0.0
> AT3G24190.1 | Symbols: | Protein kinase superfamily protein
| chr3:8743253-8747901 FORWARD LENGTH=2646
Length=2646
Score = 4224 bits (2287), Expect = 0.0
Identities = 2534/2649 (96%), Gaps = 33/2649 (1%)
Strand=Plus/Plus
Query 1 CCGTAGAAGAGCTACTGCTTCATCAACCACAACCACAATCTCCTC-AAA--TCTCTCTAC 57
|||||||||||||||| ||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 1 CCGTAGAAGAGCTACTACTTCATCAACCACAACCACTATCTCCTCAAAATCTCTCTCTAC 60
Query 58 CGATCGATGGAAGCAGCAGTGCCACGACTCGTCTATTGCGGACCGGAGCCAATTCGATTC 117
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 61 CGATCGATGGAAGCAGCAGTGCCACGTCTCGTCAATTGCGGACCGGAGCCAATTCGATTC 120
Query 118 TCCGTCTCCTCACGCCGCTCCTTCGTCTCCGGTATTCCTCACCGTAATAAACGCTCTCGC 177
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TCCGTCTCCTCCCGCCGCTCCTTCGTCTCCGGGATTCCTCACCGTAATAAACGCTCTCGC 180
Query 178 CAGATTCTAGCCGTCGCTACTGATCCTAAACCTACACAGACTAATCCACCCAAGTCCACC 237
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 CAGATTCTAGCCGTCGCTACTGATCCTAAACCTACACAGACTAGTCCACCCAAGTCCACC 240
Query 238 ACCGTCAACGGATCTTCTTCTTCTCCATCGTCTGCGTCAAAAGTAGTCAACAACAATGTT 297
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACCGTAAACGGA---TCTTCTTCTCCATCGTCTGCGTCAAAAGTAGTCAACAACAATGTT 297
Query 298 TCCACAAGAATTAACGATGTATCTAAAGAGATTAAAAGAGTACGAGCTCAAATGGAAGAA 357
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 298 TCCACTAGAATTAACGATGTATCAAAAGAGATTAAAAGAGTACGAGCTCAAATGGAAGAA 357
Query 358 GATGAACAGTTATCTGTGTTAATGAGAGGACTTCGTGGCCAAAATTTGAAGGATTCGGTT 417
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 358 GATGAACAGTTATCTGTGTTGATGAGAGGGCTTCGTGGCCAGAATTTGAAGGATTCGGTT 417
Query 418 TTTGCCGATGATAATATTCAGCTAAGGCTTGTTGAGACTGGTGAAAGCAGTGAGTTCTTA 477
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTTGCTGATGATAATATTCAGCTAAGGCTTGTTGAGACTGGTGAAAGCAGTGAGTTCTTA 477
Query 478 CCTTTGGTATATGATCCGGAGACCATTTCTGCCTATTGGGGGAAACGACCTCGTGCTGTT 537
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 CCTTTGGTATATGATCCGGAGACCATTTCTGCCTATTGGGGGAAACGGCCTCGTGCTGTT 537
Query 538 GCTTCTCGAGTTATCCAGTTGCTTTCGGTCGCAGGAGGGTTTCTCTCGCGTATTGCTGGG 597
||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct 538 GCTTCTCGAGTTATCCAGTTGCTTTCGGTTGCTGGAGGGTTTCTATCGCGTATTGCAGGG 597
Query 598 GATGTAATAAACAAGAAAGTCAAAGAGAATGAGGTTGCTAGGGCAATTGAATTGAGGGAA 657
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 598 GATGTAATAAACAAGAAAGTTAAAGAGAATGAGGTTGCTAGGGCAATTGAATTGAGGGAA 657
Query 658 ATTGTTACTTCCTTGGGTCCGGCGTACATTAAACTTGGGCAAGCTTTGAGTATTCGACCA 717
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 658 ATTGTAACTTCCTTGGGTCCAGCATACATTAAACTTGGGCAAGCTTTGAGTATTCGACCA 717
Query 718 GATATCTTGTCTCCCGCTGCAATGACAGAGCTACAGAAGCTGTGTGATAAGGTGCCTTCA 777
||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 718 GATATATTGTCACCCGCTGCAATGACAGAGCTACAAAAGTTGTGTGATAAGGTCCCTTCA 777
Query 778 TATCCTGATGATGTAGCAATGGCTTTAATTGAGGAGGAGCTTGGGAAGCCATGGTACGAC 837
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 778 TATCCTGATGATGTAGCAATGGCTCTAATTGAGGAGGAGCTTGGGAAGCCATGGTACGAC 837
Query 838 ATTTATTCCGAGCTTTCCCCTTCCCCAATCGCTGCTGCATCCCTGGGACAAGTGTACAAG 897
||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||
Sbjct 838 GTTTATTCCGAGCTCTCTCCTTCCCCAATCGCTGCTGCATCCCTGGGACAAGTTTATAAG 897
Query 898 GGAAGACTAAAGGAAAATGGGGATCTAGTGGCAGTAAAAGTACAGAGGCCTTTCGTTCTT 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GGAAGACTAAAGGAAAATGGGGATCTAGTGGCAGTAAAAGTACAGAGGCCTTTCGTTCTC 957
Query 958 GAGACTGTGACTGTTGACTTGTTTGTAATACGGAATTTAGGTCTATTTCTGCGGAAGTTC 1017
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 958 GAGACTGTGACTGTTGACTTGTTTGTGATACGGAATTTAGGTCTATTTCTGCGGAAGTTC 1017
Query 1018 CCTCAGGTGTCAGTAGATGTTGTTGGACTGGTTGATGAATGGGCTGCTCGCTTTTTTGAG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CCTCAGGTGTCAGTAGATGTTGTTGGACTGGTTGATGAATGGGCTGCTCGCTTTTTTGAG 1077
Query 1078 GAGCTGGATTATGTTAACGAGGGAGAAAATGGAACATATTTTGCAGAAATGATGAAGAAA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GAGCTGGATTATGTTAACGAGGGAGAAAATGGAACATATTTTGCAGAAATGATGAAGAAA 1137
Query 1138 GATCTTCCACAAGTTGTTGTACCTAAAACCTACCAAAAGTACACGTCAAGGAAGGTTCTT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GATCTTCCACAAGTTGTTGTACCTAAAACCTACCAAAAGTACACGTCAAGGAAGGTTCTT 1197
Query 1198 ACAACCTCATGGATTGATGGCGAGAAACTGTCACAAAGTATTGAGAGTGATGTCGGCGAA 1257
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1198 ACAACCTCATGGATTGATGGTGAGAAACTGTCACAAAGTATTGAGAGTGATGTCGGCGAA 1257
Query 1258 CTTGTGAATGTTGGTGTTATTTGTTACCTAAAGCAGTTGCTTGATACTGGGTTTTTCCAT 1317
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1258 CTTGTGAATGTTGGTGTTATTTGTTACCTAAAGCAGTTGCTCGATACTGGGTTTTTCCAT 1317
Query 1318 GCTGACCCTCATCCTGGAAATATGATCCGTACCCCAGATGGGAAACTAGCCATCCTCGAT 1377
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1318 GCTGACCCTCATCCTGGAAATATGATCCGTACCCCAGACGGGAAACTAGCCATCCTCGAT 1377
Query 1378 TTTGGTCTTGTTACCAAGTTGACTGATGATCAGAAGTACGGAATGATTGAAGCCATTGCA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TTTGGTCTTGTTACCAAGTTGACTGATGATCAGAAGTACGGAATGATTGAAGCCATTGCA 1437
Query 1438 CACTTAATTCACCGAGATTATGATGCCATAGTAAAGGATTTTGTCAAACTTGGTTTCATC 1497
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 1438 CACTTAATTCACCGAGATTATGATGCCATAGTAAAAGATTTTGTTAAACTCGGTTTCATC 1497
Query 1498 CCTGATGGGGTCAATCTAGCACCTATATTACCTGTCCTGGCCAAGGTTTTTGATCAGGCG 1557
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CCTGATGGGGTCAATCTGGCTCCTATATTACCTGTCCTGGCCAAGGTTTTTGATCAGGCG 1557
Query 1558 CTCGAAGGTGGCGGAGCAAAAAACATCAACTTTCAAGAGTTGGCAGCAGATTTGGCGCAG 1617
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1558 CTCGAAGGTGGTGGAGCAAAAAACATCAATTTTCAAGAGTTGGCAGCAGATTTGGCACAG 1617
Query 1618 ATAACTTTTGACTATCCTTTCAGAATTCCCCCTTATTTCGCCCTTATAATTAGGGCAATT 1677
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1618 ATAACTTTTGACTATCCTTTCAGAATTCCCCCTTATTTCGCCCTAATTATTAGGGCAATT 1677
Query 1678 GGTGTGCTAGAAGGTATAGCTCTAGTGGGGAATCCTGAATTTGCTATTGTGGACGAGGCT 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1678 GGTGTGCTAGAAGGTATAGCTCTAGTGGGGAATCCTGAATTTGCTATTGTGGATGAGGCT 1737
Query 1738 TATCCTTATATCGCTCAGCGGCTACTTACGGATGAATCACCTCGCCTGAGAGAGGCTTTA 1797
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1738 TATCCTTATATCGCTCAGCGGCTCCTTACGGATGAATCACCTCGCTTGAGAGAGGCTTTA 1797
Query 1798 CGCTACACAATATATGGGAAGACTGGCGTTTTTGATGCTGAAAGATTCATAGATGTGATG 1857
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1798 CGCTACACAATATATGGGAAGACTGGCGTTTTTGATGCTGAAAGATTCATCGATGTGATG 1857
Query 1858 CAAGCCTTTGAGACTTTCATTACAGCAGCCAAAAGTGGAGGAGGGGAAGATATGAATGGA 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 CAAGCCTTTGAGACTTTCATTACAGCAGCCAAAAGTGGAGGAGGGGAAGATATGAATGGA 1917
Query 1918 GGCATGGCGGAGCTGGCTCTTATGCAAAGTAAGACAAGCAGTTTGGTTCCTATGTTTCCA 1977
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 GGCATGGCAGAGATGGCTCTTATGCAAAGTAAGACAAGCAGTTTGGTTCCTATGTTTCCA 1977
Query 1978 GCTAGTGCATCCCAACCGGACCAGCCAGTTCAAACGAGAGTCGCTTTGTCCTTTCTTCTT 2037
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 1978 GCTAGTGCATCCCAACCGGACCAGCCAGTTCAAACAAGAGTCGCTTTGTCTTTTCTGCTT 2037
Query 2038 TCGGAGAAAGGGAACTTCTTCCGCGAGTTTCTATTGGATGAGATAGTAAAAGGCATTGAT 2097
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2038 TCGGAGAAAGGGAACTTCTTCCGCGAGTTTCTATTGGATGAGATAGTAAAAGGTATCGAT 2097
Query 2098 GCAATCACAAGAGAACAGCTGGTGCAAGCAATGGCGGTCTTCGGATTCAGAAACGCAACA 2157
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2098 GCAATCACAAGAGAACAGCTGGTGCAAGCAATGGCGGTATTCGGATTCAGAAACGCGACA 2157
Query 2158 CCAATCTTCGGTATGTTACCACCAACATTGGGACCCTTCAGGCCTGCAGCACTGCTTCCA 2217
||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 2158 CCAATCTTCGGTATGTTACCACCAACACTGGGACCCTTCAAGCCTGCAGCACTTCTTCCA 2217
Query 2218 TCCGTGACGGAAGAAGACAAGGTCATCTTGAACAATGTTCAGAAAGTAATCGAGTTCCTT 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 TCCGTGACGGAAGAAGACAAGGTCATCTTGAACAATGTTCAGAAAGTAATCGAGTTCCTT 2277
Query 2278 ACCTCAAAAAGCTCCATGTCGAATAATCCTGATCAGGTTGTAGATGTATCTCAAGTGGTT 2337
||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 2278 ACCGCAAGAAGCTCCATGTCGAATAATCCTGATCAGGTAGTAGATGTATCTCAAGTTGTT 2337
Query 2338 CGGGAACTGCTTCCCGTGTTGCCTGGAATCTCTGCGACAGTACTGCCTGAGATTTTGAGT 2397
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2338 CGGGAACTGCTTCCAGTGTTGCCTGGAATCTCTGCCACAGTACTGCCTGAGATTTTGAGT 2397
Query 2398 CGGCTCGGGTCAAGAGTAATGGCGAGAATAGTCCGGGATGCGTTTTTGTGAATATTGGGT 2457
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 2398 CGGCTTGGGTCAAGGGTCATGGCGAGAATAGTCCGGGATGCGTTTTTGTGAATATTGGAT 2457
Query 2458 TGAGCTTTGTACAATTGTGCATATACGTTGCATTTTAAAGTTACTACAAAAGAAATATAT 2517
| | ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 2458 TAAACTTTGTACAATTGTGCATATAAGTTGCATTTTAAAGTTACTACAAA-GAAATATAT 2516
Query 2518 AGCTGATTAAGTTGCATTAT-A-CACA-AT----T-G----------CA-A-T-G----G 2552
|||||||||||||||||||| | |||| || | | || | | | |
Sbjct 2517 AGCTGATTAAGTTGCATTATTAACACATATACACTTGATGTTATATACACAGTTGCAATG 2576
Query 2553 -AACAATGACTTTGCCTTCCTAATGTGGCCGTGTTGGACATCAAAATTTAAAGCACAGTA 2611
|||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||
Sbjct 2577 GAACAATGACTTTGCCTTCCTTATGTGGCAGTGTTGGACATCAAAATTTAAATCACAGTA 2636
Query 2612 TTCAAATTT 2620
|||| ||||
Sbjct 2637 TTCACATTT 2645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130082883199
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5