BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479925
Length=2001
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24080.1 | Symbols: | KRR1 family protein | chr3:8694961-86... 2377 0.0
> AT3G24080.1 | Symbols: | KRR1 family protein | chr3:8694961-8697124
REVERSE LENGTH=2164
Length=2164
Score = 2377 bits (1287), Expect = 0.0
Identities = 1731/1936 (89%), Gaps = 67/1936 (3%)
Strand=Plus/Plus
Query 1 CATGATGGGGCGGCTGAAAGCGATACCAGATGCTGACGACGGCGACGAGCTTCCACAGTT 60
|||||||||||||| ||||||||||||||||| |||||||||||| | ||| |||||||
Sbjct 17 CATGATGGGGCGGCCGAAAGCGATACCAGATGATGACGACGGCGA--A-CTTTCACAGTT 73
Query 61 CACAGGCTTCGA-GCTCGATGGA-GAATAC-ATGAAGAGATTGGAGCACAACAA-GAACC 116
|| ||| ||||| | ||||| | || | | | ||||||||| ||||||||| ||| |
Sbjct 74 CAAAGGTTTCGATG-TCGAT-AACGATTTCGCT-AAGAGATTGTTGCACAACAAGGAA-C 129
Query 117 GCGAGGCTCTCCAGCGACATGAGGAGCGGAAGAAG-AGAGGTCTCATCGA-CGATTCCGA 174
|||||| ||| |||||| | || ||| ||| ||| | ||||||| || | ||| |||||
Sbjct 130 GCGAGGATCTTCAGCGATACGAAGAGAAGAATAAGCA-AGGTCTCTTC-AGCGAGTCCGA 187
Query 175 GGAAGATTCTGAGCCGGAGTCTGAGCCGGATTCTGATCTTGGAAATCCAGAAAGCGATCT 234
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 188 GGAAGAGCCTGAGACGGAGTCTGAGCCGGATTCTGATCTTGGAAATCCAGAAAGCAATCT 247
Query 235 CAAATTCGTTGATTTGTTGCTTAAGGTAAAGAAAAAGGATCCTATTATTAAGAACAAAGA 294
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 248 CAAATTCGTTGATTTGTTGATTAAGGTAAAGAAAAAGGATCCTATTATTAAGGACAAAGA 307
Query 295 TGCTAAGTTCTTTGAGTCTGATGATGAGAGTAGTgaagaagaagatggggttgataagaa 354
||||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||
Sbjct 308 TGCTAAGTTCTATGAGTATGATGATGAGAGTAGT---GAAGAAGATGAGGTTGATAAGAA 364
Query 355 ggat------aagaaaaagaagacgaagaagatgtatttgaaagatGTTCAAGCACAGCA 408
|||| ||||| ||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 365 GGATACGAAAAAGAAGAAGAAGAAGAAGAAGATGTATTTGAAAGATGTTCAGGCACAGCA 424
Query 409 TTTGCTTGAGGAAGGTCCTGAGTATGTTGAGGAAGATGAGAATAGGAAGGTTAGGACTTA 468
||||||||||| ||||||||||| |||||||||||||||| | ||||| |||||||||||
Sbjct 425 TTTGCTTGAGGGAGGTCCTGAGTTTGTTGAGGAAGATGAGGAGAGGAAAGTTAGGACTTA 484
Query 469 CGCTGAGCAGCAGGGAGAGATGAGGAGAGCTGTTACGGATGCTTTGG-AAGCTGGAGGGA 527
||||||| ||||| ||| | ||||| |||||| || ||||| |||| |||||| |||||
Sbjct 485 CGCTGAGGAGCAGAAAGAAACGAGGAAAGCTGTGACTGATGC-TTGGAAAGCTGAAGGGA 543
Query 528 ATGAGAGTGATGGAGATGATGATTTTTTGAGAGTTGTGGAGAAGGAAGGAGAAGATGATG 587
| ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 544 ACGAGAGTGGTGAAGATGATGATTTTTTGAGAGTTGTGGAGAAGGAAGGAGATGATGATG 603
Query 588 TGGAGGTTGATGAGGAGTTAGCTAAGAAAATTGATGAGTATTTTGGTGAAGAAGCTGAGG 647
||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 604 TGGAGGTTGATGAGGAGTTAGCTAAGAAAATGGATGAGTATTATGGTGATGAAGCTGAGG 663
Query 648 TTGTTGAGAATCAGTTTTTGAAAGATTATTTGGTGAAACAGTTGTGGAAGGAGAAAGAGG 707
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 664 CTACTGAGAATCAGTTTTTGAAAGATTACTTGGTGAAACAGTTGTGGAAGGAGAAAGAGG 723
Query 708 AGAATATTGTAGATAAAGCAGAGTTGAGGGAGTTGAGTGATGATGAGCATGCTGTTTGGG 767
||| || || | ||| |||||||| |||||||||||| ||||| || | |||||||
Sbjct 724 AGAGGGTTCCAGGTGAAGAAGAGTTGAAGGAGTTGAGTGAGGATGATCACGAGGTTTGGG 783
Query 768 ATCAGGAGGATTTTGAGGCAGGAAGACCGTTGGA--GA-GCAGCTATAGGCATG-A-A-G 821
|||||||||||||||||||||||||||||||||| | | ||||||||||| | | |
Sbjct 784 ATCAGGAGGATTTTGAGGCAGGAAGACCGTTGGATTTATTAAACTATAGGCATGAAGATG 843
Query 822 AGAATGCTGGAGACATTGTTATGGGTCAGTCTAGGGTTGTGGAAGGGTCGGTGAGGAAGA 881
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 AGAATGCTGGGGACACTGTTATGGGTCAGTCTAGGGTTGTGGAAGGGTCGGTGAGGAAGA 903
Query 882 AGGATAATGCGAGGAAGGCGCAGAGGAAGAGTAAAGAGGAGAGGATGAAGTTGGCTGA-G 940
|||||||||||||||||||||||||||||| |||||| |||||||||||| || || |
Sbjct 904 AGGATAATGCGAGGAAGGCGCAGAGGAAGAATAAAGACGAGAGGATGAAGAAGGAGGATG 963
Query 941 ATggagaggaaagaagatttgaagcagttgaagaatgttaagaagaaggagatgaaggaa 1000
||| ||||||||| || ||||||| ||||||||||||||||||||||||||| |||||
Sbjct 964 ATGT-GAGGAAAGAGGAGTTGAAGCGGTTGAAGAATGTTAAGAAGAAGGAGATTAAGGAG 1022
Query 1001 aagatgaagaagGTGCTTTCTGTTGCTGGTTTTAAGGATGGAGAAGAGTGTCCGTTAGAT 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 AAGATGAAGAAGGTGCTTTCTGTTGCTGGTTTTAAGGATGGAGAAGAGTGTCCGTTAGAT 1082
Query 1061 GCGAAAGATTTTGATGATGAGTTTGATCCGGAGGAGTATGATAAGATGATGAAAGCTGCG 1120
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1083 GCCAAAGATTTTGATGATGAGTTTGATCCTGAGGAGTATGATAAGATGATGAAAGCTGCG 1142
Query 1121 TTTGATGATAAGTATTATGGTGCGGAGGATTCGGATTTGAATAGTGATGAGGATGATGAT 1180
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1143 TTTGATGATAAGTACTATGGTGAGGAGGATTCGGATTTGAATAGTGATGAGGATGATGAT 1202
Query 1181 GGAGAGAAACCAGATTTTGACAAAGAAGATGAATTGCTTGGACTTCCCAAAGATTGGGAT 1240
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1203 GGAGAGAAACCAGATTTTGACAAGGAAGATGAATTGCTTGGACTTCCTAAAGATTGGGAT 1262
Query 1241 GTGACTAAAGGTGGGGATGTTTTTACAGCCGCTAGAGAAAAGGGTTTGAAGCACAAGGGG 1300
|||||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||
Sbjct 1263 GTGACTAAAGGTGGGGATGTTTTTGCAGCCGCAAGAGAAAAGGTTTTGAAGCATAAGGAA 1322
Query 1301 AACGTTTTGGGtgat-gatgaagaagaagaggaagaagaagtag-atgatgaagaagaag 1358
||| | |||||| || |||||||||||||| ||||| |||| || | || ||||| ||||
Sbjct 1323 AACATGTTGGGT-ATTGATGAAGAAGAAGAAGAAGATGAAG-AGGAAGAGGAAGACGAAG 1380
Query 1359 aggaagaagaagtagatgaggagaaggaggcagagggtaagaggaagagaaagCGAAAAA 1418
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AAGAAGAGGAAGTAGATGAGGAGAAGGAGGCAGAGGGTAAGAGGAAGAGAAAGCGAAAAA 1440
Query 1419 CGTCACTTGTACAAAGAGCC-AAAGAAGCTTTGATGGAGGAGTACTACAAGTTAGACTAT 1477
|||| |||||||||| || | |||||||||||||||||||||||||||||| |||| |||
Sbjct 1441 CGTCTCTTGTACAAA-AGACGAAAGAAGCTTTGATGGAGGAGTACTACAAGCTAGATTAT 1499
Query 1478 GAGGATACAATTGGAGATTTGAAAACAAGGTTCAAGTATGCGAAAGTACAACCAAACAGA 1537
||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1500 GAGGATACAATTGGAGAATTGAGAACAAGGTTTAAGTATGCGAAAGTACAACCAAACAGA 1559
Query 1538 TTCGAACTGGATACAGGAGAGATACTCACCTTAGATGACACAGACCTGAACCAATATGTG 1597
|| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 1560 TTTGAACTGGATACAGGAGAGATACTTACCTTAGATGACGCAGAGCTGAACCAATATGTG 1619
Query 1598 CCGTTGAAGAAGATGGCTCCTTATGTGGAAAAGGATTGGGAGGTGAATAAGCACAAGGTT 1657
|| |||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1620 CCATTGAAGAAAATGGCTCCTTATGTGGAAAAGGATTGGGAGGTGAATAGGCATAAGGTC 1679
Query 1658 AAGGAGCAGAAACTTAAGATCAGGGAGTTGTGGGAGGGTAAACACAATGAGAAGAAAAAC 1717
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1680 AAGGAGCAGAAACGTAAGATCAGGGAGTTGTGGGAGGGTAAACACGATGAGAAGAAAAGC 1739
Query 1718 AAGAAGAGGAAGAAGACTGATGTTGCTGAGACGAAACCAACACCGAAAG---C--AG--- 1769
|||||||||||||||| |||||||| |||||| |||||||||||||||| | ||
Sbjct 1740 AAGAAGAGGAAGAAGAATGATGTTGTTGAGACCAAACCAACACCGAAAGAGGCTGAGGCT 1799
Query 1770 -A---TGAGG---A-----AGGC-GAGGCTGAGGCTGAGGCT-A----AA-CTATCAAGA 1810
| ||||| | |||| |||||||||||||||||| | || ||||| |||
Sbjct 1800 GAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTAAACTATCGAGA 1859
Query 1811 AAGGCGAAGAGAAGAAGGCGTCAAGCAGAGAAGAAGCTTCCTGCTAGCAGAATGGCTGCT 1870
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1860 AAGGCCAAGAGAAGAAGGCGTCAAGCAGAGAAGAAGCTTCCTCCTAGCAGAATGGCTGCG 1919
Query 1871 TATGGGAAGGCATAAT 1886
|||||||| |||||||
Sbjct 1920 TATGGGAAAGCATAAT 1935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99146076375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5