BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479940
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23920.1 | Symbols: BAM1, BMY7, TR-BAMY | beta-amylase 1 | c... 2950 0.0
> AT3G23920.1 | Symbols: BAM1, BMY7, TR-BAMY | beta-amylase 1 |
chr3:8641569-8644449 FORWARD LENGTH=2131
Length=2131
Score = 2950 bits (1597), Expect = 0.0
Identities = 1806/1907 (95%), Gaps = 14/1907 (1%)
Strand=Plus/Plus
Query 1 AAAATGGCGCTTAATTTATCGCATCAGCTCGGAGTACTCGCCGGAACTCCGATCAAATCC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 151 AAAATGGCGCTTAATTTATCGCATCAGCTAGGAGTACTCGCCGGAACTCCGATCAAATCC 210
Query 61 GGTGAAATAACCGATTCATC---GTTATCAATTTCACCACCATCAGCGAGGATGATGACA 117
|||||||| || |||||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct 211 GGTGAAATGACAGATTCATCGTTGTTATCAATTTCACCACCATCGGCGAGAATGATGACA 270
Query 118 CCTAAAGCAATGAATCGAAACTACAAAGCTCATGGAACAGATCCATCACCACCGATGAGT 177
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 271 CCTAAAGCAATGAATCGAAACTACAAGGCTCACGGAACAGATCCATCACCGCCGATGAGT 330
Query 178 CCAATTTTAGGGGGGACGCGTGCGGATCTGTCGGTGGCGTGTAAAGCTTTCGCGGTGGAG 237
||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 CCAATTTTAGGTGCGACACGTGCGGATCTGTCGGTGGCGTGTAAAGCTTTCGCGGTGGAG 390
Query 238 AATGGAGTCGAAACCATTGAAGAACAGAGAACGTATAAAGAAGGAGGGATTGGTGG--AG 295
|||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 391 AATGGAATCGGGACCATTGAAGAACAGAGAACGTATAGAGAAGGAGGGATTGGTGGAAAG 450
Query 296 -AAGAAGGA-GA--AGGTGTTCCTGTGTTTGTGATGATGCCGCTTGATAGTGTTACGATG 351
|||||||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 451 AAAGAAGGAGGAGGAGGTGTTCCTGTGTTTGTGATGATGCCGCTTGATAGTGTTACCATG 510
Query 352 GGGAACACGGTGAATCGGAGGAAGGCGATGAAAGCGAGTTTGCAAGCGTTGAAGAGTGCT 411
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 511 GGGAACACGGTGAATCGAAGAAAGGCGATGAAAGCGAGTTTGCAAGCGTTGAAGAGTGCT 570
Query 412 GGTGTTGAAGGGATTATGATTGATGTATGGTGGGGTTTGGTGGAGAAGGAATCTCCGGGA 471
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 571 GGTGTTGAAGGGATTATGATTGATGTGTGGTGGGGTTTGGTTGAGAAGGAATCTCCTGGA 630
Query 472 AGTTATAATTGGGGAGGTTATAATGAATTGCTTGAAATGGCTAAGAAGCTTGGACTTAAG 531
| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 631 ACTTATAATTGGGGAGGTTATAATGAATTGCTTGAGCTGGCTAAGAAGCTTGGTCTTAAG 690
Query 532 GTTCAAGCTGTGATGTCGTTTCATCAGTGTGGTGGTAACGTTGGTGATTCTGTCACTATT 591
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 691 GTTCAAGCTGTTATGTCGTTTCATCAGTGTGGTGGCAACGTTGGTGACTCTGTCACTATT 750
Query 592 CCTCTGCCTCAGTGGGTTATTGAAGAGGTTGACAAGGACCCAGACCTTGCGTATACTGAT 651
|||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 751 CCTCTGCCTCAGTGGGTTGTTGAAGAGGTTGACAAGGATCCAGACCTTGCATACACTGAT 810
Query 652 CAGTGGGGAAGAAGGAATTGTGAGTATGTATCACTTGGCGCTGATACACTTCCGGTTCTC 711
||||||||||||||||| ||||||| |||||||||||||||||||||| || ||||||
Sbjct 811 CAGTGGGGAAGAAGGAACCATGAGTATATATCACTTGGCGCTGATACACTCCCTGTTCTC 870
Query 712 AAAGGTAGAACACCTGTGCAATGCTATGCGGATTTCATGCGAGCTTTCAGAGACAACTTC 771
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 871 AAAGGTAGAACACCTGTGCAATGCTATGCGGATTTCATGCGTGCTTTTAGAGACAACTTC 930
Query 772 AAGCATCTTCTTGGAGAGACCATTGTGGAAATCCAAGTGGGAATGGGACCTGCCGGAGAG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 931 AAGCATCTTCTTGGAGAGACCATTGTGGAAATCCAAGTGGGAATGGGACCTGCAGGAGAG 990
Query 832 CTGCGTTATCCTTCGTACCCCGAGCAAGAGGGGACATGGAAGTTCCCAGGGATTGGAGCC 891
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 991 CTGCGTTACCCTTCGTACCCCGAGCAAGAAGGGACATGGAAGTTCCCAGGGATTGGAGCC 1050
Query 892 TTCCAGTGCTATGATAAGTACTCATTAAGCAGCTTGAAAGCAGCAGCTGAGGCTTATGGG 951
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1051 TTCCAGTGCTATGATAAGTACTCGTTAAGCAGCTTGAAAGCAGCAGCTGAGACTTATGGG 1110
Query 952 AAGCCAGAATGGGGCAGTACTGGCCCAACCGATGCTGGTCACTACAATAACTGGCCAGAA 1011
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAGCCAGAGTGGGGCAGTACTGGCCCAACCGATGCTGGTCACTACAATAACTGGCCAGAA 1170
Query 1012 GACACTCAGTTCTTCAAAAAAGAAGGTGGCGGTTGGAACACGGAGTATGGAGATTTCTTC 1071
||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 1171 GACACCCAGTTCTTCAAAAAAGAAGGTGGTGGTTGGAACTCAGAGTATGGAGATTTCTTC 1230
Query 1072 CTCTCATGGTACTCCCAGATGCTGTTGGATCACGGCGAGCGGATCCTATCCTCAGCCAAA 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 CTCTCATGGTACTCCCAGATGCTGTTGGATCACGGCGAGCGGATCCTATCCTCAGCCAAA 1290
Query 1132 TCAATCTTCGAAAACACCGGTGTCAAAATATCGGTCAAAATCGCAGGAATCCACTGGCAC 1191
||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1291 TCAATATTCGAAAACATGGGTGTCAAAATATCGGTCAAAATCGCTGGAATCCACTGGCAC 1350
Query 1192 TATGGGACCCGTTCTCACGCTCCTGAGCTCACAGCAGGATACTACAACACAAGGTTCAGA 1251
|| |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1351 TACGGGACCCGCTCTCACGCGCCTGAGCTCACAGCAGGGTACTACAACACAAGGTTCAGA 1410
Query 1252 GACGGATACCTCCCGATCGCCCAAATGTTAGCCAGACACAATGCCATATTCAACTTCACA 1311
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 GACGGGTACCTCCCGATCGCCCAAATGTTAGCCAGACACAATGCCATATTCAACTTCACA 1470
Query 1312 TGTATTGAGATGAGAGATCACGAGCAACCTCAAGACGCACTTTGTGCACCAGAGAAGCTA 1371
||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1471 TGTATCGAGATGAGGGATCACGAACAGCCTCAAGACGCACTTTGTGCACCAGAGAAGCTA 1530
Query 1372 GTTAACCAGGTGGCTCTAGCCACGCTGGCTGCAGAAGTTCCTCTAGCTGGTGAAAACGCA 1431
|||||||| || ||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1531 GTTAACCAAGTTGCTCTAGCCACTCTAGCCGCAGAAGTTCCTCTAGCTGGTGAAAACGCA 1590
Query 1432 TTGCCTAGGTACGACGACTACGCGCACGAGCAGATTCTCAAGGCCTCCGCGCTGAACCTA 1491
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1591 TTGCCTAGGTACGACGACTATGCACACGAGCAGATTCTCAAGGCCTCCGCGCTGAACCTT 1650
Query 1492 GATCAAAACAACGAGGGAGAACCCCGAGAGATGTGTGCATTTACTTACCTAAGGATGAAC 1551
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1651 GATCAAAACAATGAGGGAGAACCTCGAGAGATGTGTGCATTTACTTACCTAAGGATGAAT 1710
Query 1552 CCGGAGTTGTTTCAAGCAGATAACTGGGGGAAATTCGTAGCGTTTGTGAAGAAAATGGGT 1611
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1711 CCGGAGTTGTTTCAGGCGGATAACTGGGGAAAATTCGTAGCGTTTGTGAAGAAAATGGGT 1770
Query 1612 GAAGGGAGAGACTC-CAATAGGTG-CTGGGAAGAAGTTGAGCGTGAGGCTGAGCATTTTG 1669
|||||||||||||| || ||| || | |||||||||||||||||||||||||||||||||
Sbjct 1771 GAAGGGAGAGACTCACA-TAGATGTC-GGGAAGAAGTTGAGCGTGAGGCTGAGCATTTTG 1828
Query 1670 TGCATGTTACTCAGCCGCTGGTTCAAGAAGCTGCAGTGGCTCTCACTCACTAGAGAGATA 1729
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1829 TGCACGTTACTCAGCCGCTGGTTCAAGAAGCTGCAGTGGCTCTCACTCACTAGAGAGATA 1888
Query 1730 GATTGTGGCATGGTTCGATGGTTTATGTTTGTATGCGATTATAATGAAATGGTTTATATG 1789
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1889 GATTGTGGCATGGTTCTATGGTTTATGTTTGTATGCGATTATAATGAAATGGTT-ATATG 1947
Query 1790 ATGATGCCGAAAAAGATGTTTAGGCTTGTTGGAGTTTGTGTATGTATTGTTAGTAAAAAT 1849
| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1948 ACAATGCCAAAAAAGATGTTTAGGCTTGTTGGAGCTTGTGTATGTATTGTTAGTAAAACT 2007
Query 1850 GAAATGTATGCCACAGCTCTGGTTTTTGTCTGGTCAGGTTGTGGCAT 1896
||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2008 GAAATGTATGCCACAGCTCTGGTTTTTTTCCGGTCAGGTTGTGGCAT 2054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93875019150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5