BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479952
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24430.1 | Symbols: HCF101 | ATP binding | chr3:8868583-8872... 2553 0.0
AT1G36272.1 | Symbols: | unknown protein; Has 30201 Blast hits... 156 7e-37
> AT3G24430.1 | Symbols: HCF101 | ATP binding | chr3:8868583-8872201
REVERSE LENGTH=1794
Length=1794
Score = 2553 bits (1382), Expect = 0.0
Identities = 1528/1599 (96%), Gaps = 7/1599 (0%)
Strand=Plus/Plus
Query 1 ATGCCGCTTCTCCATCCTCAGTCGTTGAGGCATGCTTGTTTCGAGTTTCAGACTC--A-A 57
||||||||||| ||||| ||||||||| ||||| ||| ||||||| ||||||| | | |
Sbjct 48 ATGCCGCTTCTTCATCCACAGTCGTTGCGGCATCCTTCTTTCGAGATTCAGACCCAAAGA 107
Query 58 AGAAGCAATTCTACAAAAAGATTGCTTCTTTCTCACAAGTTTCTCCAATCTCAATCTTCC 117
||||||||||| |||| |||||||||||||||||||||||||||||| |||||| |||||
Sbjct 108 AGAAGCAATTCCACAACAAGATTGCTTCTTTCTCACAAGTTTCTCCATTCTCAAGCTTCC 167
Query 118 ATTATCTCAATCTCCAGGACAAGAATCCTCAAACGGGTCTCTCAGAAACTCTCTATAGCT 177
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 168 ATTATCTCAATCTCCAGGACAAGAATCCTCAAACGGGTCTCTCAGAATCTCTCTGTAGCT 227
Query 178 AAAGCTGCTTCAGCTCAAGCTAGTAGTAGTGTTGGTGAGAGTGTTGAC-AAAACATCAGA 236
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 228 AAAGCTGCTTCAGCTCAAGCTAGTAGTAGTGTTGGTGAGAGTGTTG-CTCAAACATCAGA 286
Query 237 AAAAGATGTGTTGAAGGCGT-TGTCTCAGATTATTGATCCTGATTTTGGGACAGATATTG 295
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 287 AAAAGATGTGTTGAAGGC-TCTGTCTCAGATTATTGATCCTGATTTTGGGACAGATATTG 345
Query 296 TTTCTTGTGGTTTTGTGAAAGATTTGGGGATTGATGAAGCTTTGGGTGAGGTTTCGTTCC 355
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 346 TTTCTTGTGGTTTTGTGAAAGATTTGGGGATTAATGAAGCTTTGGGTGAGGTTTCGTTCC 405
Query 356 GGTTGGAGCTGACAACACCAGCATGTCCTGTCAAGGACATGTTTGAGAACAAGGCAAATG 415
| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 406 GTTTGGAGCTGACAACACCCGCATGTCCAGTCAAAGACATGTTTGAGAACAAGGCAAATG 465
Query 416 AGGTAGTTGCAGCGCTTCCTTGGGTGAAGAAGGTCAATGTGACAATGTCAGCACAACCAG 475
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 466 AGGTAGTTGCAGCCCTTCCATGGGTGAAGAAGGTAAATGTGACAATGTCAGCACAACCAG 525
Query 476 CCAAACCAATATTTGCAGGACAGCTTCCCTTTGGATTATCAAGAATTTCGAACATTATCG 535
|||| || || |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 526 CCAAGCCCATTTTTGCAGGGCAGCTTCCCTTTGGATTATCAAGAATTTCGAACATCATCG 585
Query 536 CTGTTTCTAGTTGCAAGGGTGGTGTTGGAAAATCAACAGTAGCTGTAAATCTTGCTTATA 595
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 586 CTGTTTCTAGTTGCAAGGGTGGTGTTGGGAAATCAACAGTAGCTGTAAATCTTGCTTATA 645
Query 596 CATTAGCTGGTATGGGTGCTAGAGTTGGTATCTTTGATGCTGATGTCTATGGTCCAAGTC 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 CATTAGCTGGTATGGGTGCTAGAGTTGGTATCTTTGATGCTGATGTCTATGGTCCAAGTC 705
Query 656 TACCAACCATGGTGAATCCTGAGAGCCGTATATTGGAAATGAACCCGGAGAAGAAGACCA 715
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TACCAACCATGGTCAATCCTGAGAGCCGTATATTGGAAATGAACCCGGAGAAGAAGACCA 765
Query 716 TCATTCCAACAGAATACATGGGGGTCAAACTAGTCTCATTTGGATTTGCAGGACAAGGAC 775
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 766 TCATTCCAACAGAATACATGGGCGTCAAGCTAGTCTCATTTGGATTTGCAGGACAAGGGC 825
Query 776 GTGCTATAATGAGAGGTCCTATGGTGTCTGGTGTTATAAACCAACTCCTTACAACAACTG 835
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 GTGCCATTATGAGAGGTCCTATGGTGTCTGGTGTTATAAACCAACTCCTTACAACAACTG 885
Query 836 AATGGGGAGAGTTGGATTATCTTGTTATCGACATGCCTCCTGGAACTGGTGATATTCAAC 895
||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 886 AATGGGGAGAGCTGGACTATCTTGTTATCGACATGCCTCCTGGAACTGGTGATATACAAC 945
Query 896 TGACCTTATGCCAGGTTGCGCCATTGACAGCAGCGGTAATTGTCACCACCCCACAAAAGT 955
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 946 TGACCTTATGCCAGGTTGCGCCATTGACAGCAGCGGTAATTGTCACCACCCCTCAAAAGT 1005
Query 956 TGGCGTTTATTGATGTTGCGAAAGGTGTACGAATGTTCTCAAAACTGAAGGTGCCTTGTG 1015
||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||| |
Sbjct 1006 TGGCGTTTATTGATGTTGCAAAAGGTGTAAGGATGTTCTCAAAACTTAAGGTGCCTTGCG 1065
Query 1016 TTGCTGTTGTGGAGAATATGTGCCACTTTGACGCTGATGGGAAACGTTATTACCCTTTTG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 TTGCTGTTGTGGAGAATATGTGCCACTTTGACGCTGATGGGAAACGTTATTACCCTTTTG 1125
Query 1076 GGAAAGGTTCAGGTTCTGAGGTTGTCAAGCAATTCGGCATACCTCACCTCTTTGACCTCC 1135
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1126 GGAAAGGTTCAGGTTCTGAGGTGGTCAAGCAATTCGGCATACCTCACCTCTTTGACCTCC 1185
Query 1136 CCATTAGACCGACGTTATCTGCTTCGGGGGATAGCGGAACTCCTGAAGTGGTGTCGGACC 1195
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1186 CCATTAGACCAACGTTATCTGCTTCGGGGGATAGCGGAACTCCTGAAGTAGTGTCGGATC 1245
Query 1196 CTCTAAGTGACGTTGCCAGAACGTTCCAGGATCTTGGTGTATGTGTAGTGCAACAATGCG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CTCTAAGTGACGTTGCCAGAACGTTCCAGGATCTTGGTGTATGTGTAGTGCAACAATGCG 1305
Query 1256 CCAAGATACGTCAGCAAGTATCGACGGCTGTGACATACGACAAATATCTCAAGGCAATTA 1315
|||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1306 CCAAGATACGCCAGCAAGTATCAACGGCCGTGACATACGACAAGTATCTCAAGGCAATTA 1365
Query 1316 GAGTAAAGGTACCAAACTCAGACGAAGAATTCTTACTGCACCCTGCAACCGTCAGAAGAA 1375
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1366 GAGTGAAGGTACCAAACTCAGACGAAGAGTTCTTACTGCACCCTGCAACCGTCAGAAGAA 1425
Query 1376 ATGATCGATCTGCACAAAGCGTGGACGAGTGGACTGGGGAGCAAAAGGTTCTATATGGGG 1435
||||| ||||||||||||| ||||| || |||||||| |||||||| ||||||||||| |
Sbjct 1426 ATGATAGATCTGCACAAAGTGTGGATGAATGGACTGGAGAGCAAAAAGTTCTATATGGCG 1485
Query 1436 ATGTAGCAGAAGATATCGAACCTGAGGACATACGACCAATGGGAAACTACGCTGTCTCGA 1495
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 ATGTAGCGGAAGATATCGAACCTGAGGACATACGACCAATGGGAAACTACGCTGTCTCGA 1545
Query 1496 TAACCTGGCCAGACGGGTTTAGCCAGATTGCTCCATATGACCAGTTGGAAGAAATTGAAC 1555
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1546 TAACCTGGCCCGACGGGTTTAGCCAGATTGCTCCATATGACCAGTTGGAAGAAATTGAAA 1605
Query 1556 GGCTAGTAGATGTTCCTCCATTGTCTCCGGTCGAAGTCT 1594
|||||||||||||||||||||||||||| ||||||||||
Sbjct 1606 GGCTAGTAGATGTTCCTCCATTGTCTCCAGTCGAAGTCT 1644
> AT1G36272.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:13635336-13635521
REVERSE LENGTH=186
Length=186
Score = 156 bits (84), Expect = 7e-37
Identities = 120/137 (88%), Gaps = 4/137 (3%)
Strand=Plus/Minus
Query 396 GTTTGAGAACAAGGCAAATGAGGTAGTTGCAGCGCTTCCTTGGGTGAAGAAGGTCAATGT 455
||||||||| |||||||||| |||||||| |||||||| | ||||||| |||| |||||
Sbjct 138 GTTTGAGAATGAGGCAAATGATGTAGTTGCGGCGCTTCCATAGGTGAAGCAGGTTAATGT 79
Query 456 GACAATGTCAGCACAACCAGCCAAA-CCAATATTTGCAGGACAGCTTCCCTTTGGATTAT 514
|||||||||||||||||||||||| ||| |||||||||| || |||||||||||| ||
Sbjct 78 GACAATGTCAGCACAACCAGCCAAGTCCA-TATTTGCAGGGCAACTTCCCTTTGGACTA- 21
Query 515 CAA-GAATTTCGAACAT 530
||| ||||||| |||||
Sbjct 20 CAAAGAATTTCAAACAT 4
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5