BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479955 Length=1584 Score E Sequences producing significant alignments: (Bits) Value AT3G24460.1 | Symbols: | Serinc-domain containing serine and s... 2383 0.0 > AT3G24460.1 | Symbols: | Serinc-domain containing serine and sphingolipid biosynthesis protein | chr3:8885818-8893050 REVERSE LENGTH=1976 Length=1976 Score = 2383 bits (1290), Expect = 0.0 Identities = 1440/1514 (95%), Gaps = 4/1514 (0%) Strand=Plus/Plus Query 1 TTCTTCCATATAAGAAACTGATTTCTGATGCAAAATTCTCCCATGGAATGAGTGATCTGT 60 ||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 281 TTCTTTCATCTAAGAAACTGATTTCTGATGCAAAATCCTCCCATGGAATGAGTGATCTGT 340 Query 61 TTCTTGAATTTCTTGATCTTCTAATGATATGAAGAGGAGAGCGTC-TGGTAAGTTTAAGG 119 ||||||||||||||||||||||||||| ||||||||||||| ||| |||||| ||||||| Sbjct 341 TTCTTGAATTTCTTGATCTTCTAATGACATGAAGAGGAGAGAGTCTTGGTAACTTTAAGG 400 Query 120 ACTAATGGAGACCGGTACAAGTGTTAGCAACAACAGCGGAAGCATCAGAAACGATAGCTA 179 | ||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| Sbjct 401 AGTAATGGAGACCGGTACAAGCGTTAGCAACAACAACCAAAGCATCAGAAACGATAGCTA 460 Query 180 TGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAATGGTTGCAATCCATGGAT 239 |||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 461 TGAAGCAATCAAGAATGGATCATGGTTTAATCAGTTCCGCAACGGCTGCAATCCCTGGAT 520 Query 240 GGCTAGATATGTATACGGTCTGATATTTCTCATTGCGAATCTACTAGCTTGGGCTGCTCG 299 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 521 GGCTAGATATGTATACGGTCTGATATTCCTCATTGCGAATCTACTAGCTTGGGCTGCTCG 580 Query 300 TGATTATGGTCGGGGTGCCTTAAGAAAAGTAACAAAATTCAAGAACTGTAAAGGCGGGGA 359 |||||||||||||||||||||||||||||| |||| |||||||||||||||||| || || Sbjct 581 TGATTATGGTCGGGGTGCCTTAAGAAAAGTGACAAGATTCAAGAACTGTAAAGGTGGCGA 640 Query 360 AAACTGTTTGGGGACCGAAGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTTGTTCTACTT 419 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 641 AAACTGTTTGGGGACCGACGGTGTCTTAAGAGTTAGCTTGGGATGTTTTTTGTTCTACTT 700 Query 420 TGTTATGTTTCTTTCAACACTTGGCACATCGAAAACACATTCATCAAGAGATAGATGGCA 479 |||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| Sbjct 701 TGTTATGTTTCTTTCAACACTTGGTACGTCGAAAACGCATTCATCAAGAGATAGATGGCA 760 Query 480 TTCTGGATGGTGGTTTGCTAAGCTCATCATGTGGCCTGCCTTAACCATTATCCCCTTCTT 539 ||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| Sbjct 761 TTCTGGATGGTGGTTTGTTAAGCTCATCATGTGGCCTGCCTTAACCATCATTCCCTTCTT 820 Query 540 GCTTCCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTTGGTGCAGGGGTATT 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 821 GCTTCCTTCTTCCATTATTCACCTTTACGGAGAGATTGCCCATTTTGGTGCAGGGGTATT 880 Query 600 TCTTC-TAATACAGCTAATTAGTGTGATCAGTTTCATTCAATGGCTTAACGAATGCTATC 658 || || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 881 TC-TCTTAATACAGCTAATTAGTGTGATCAGTTTCATTCAATGGCTCAACGAATGCTATC 939 Query 659 AGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTACTAGCAACTACTTCAT 718 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 940 AGTCCCAAAAAGATGCAGAAAGATGCCGTGTCTATGTGATGTTACTATCAACTACTTCAT 999 Query 719 ACACAGTTTGCATAATAGGAGTGATTTTGATGTACATTTGGTACGCGCCGGATTCGTCAT 778 |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1000 ACACAGTTTGCATAGTAGGAGTGATTTTGATGTACATTTGGTACGCGCCTGATTCTTCAT 1059 Query 779 GCCTTCTCAATATATTCTTCATAACATGGACTTTGTTCCTTATCCAACTTATGACAAGCA 838 | ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| Sbjct 1060 GTCTTCTCAATATATTCTTTATAACATGGACTTTGTTCCTCATCCAACTCATGACAAGCA 1119 Query 839 TAGCTCTCCATCCTAAGGTGAATGCTGGATACTTGACTCCAGCTCTTATGGGACTCTATG 898 | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1120 TCGCTCTCCATCCTAAAGTTAATGCTGGATACTTGACTCCAGCTCTTATGGGACTCTATG 1179 Query 899 TTGTGTTCATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGGAGAAAGTTGCAATAGAA 958 ||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 1180 TTGTGTTTATATGCTGGTGTGCCATTCGAAGTGAACCAGTGGGCGAAAGTTGTAATAGAA 1239 Query 959 AAGCAGCAGCTTCGAACAGAACGGACTGGCTTACCATCATTAGCTTTGTGGTTGCGCTAC 1018 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1240 AAGCAGCAGCTTCAAACAGAACAGACTGGCTTACCATCATTAGCTTTGTGGTTGCGCTAC 1299 Query 1019 TCGCAATGGTTATTGCCACATTTTCTACAGGAATAGACTCCCAATGTTTCCAATTCAAGA 1078 | || |||||||| || |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1300 TTGCGATGGTTATCGCGACATTTTCGACAGGAATAGACTCCCAATGTTTCCAATTTAAGA 1359 Query 1079 AAGATGAGAACGATCAAGAAGAAGAAGAGGAAGATGGTGTTCCATATGGATATGGATTCT 1138 ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||| Sbjct 1360 AAGATGAGAACGATCAAGAAGAAGAAGCTGAAGATGATGTTCCATATGGCTATGGATTCT 1419 Query 1139 TCCATTTTGTATTTGCAACAGGAGCAATGTACTTCGCTATGCTACTCATCGGTTGGAACA 1198 | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1420 TTCATTTTGTGTTTGCCACAGGAGCAATGTACTTCGCTATGCTACTCATCGGTTGGAACA 1479 Query 1199 CTCATCACCCCATGAAAAAGTGGACGATTGACGTGGGATGGACGAGTACTTGGGTAAGGG 1258 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1480 CTCATCATCCCATGAAAAAGTGGACGATTGACGTGGGATGGACAAGTACTTGGGTAAGGG 1539 Query 1259 TTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATGTTGGTGGCTCCTCTCATAC 1318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1540 TTGTGAACGAGTGGCTTGCGGTTTGCGTATACATTTGGATGTTGGTGGCTCCTCTCATAC 1599 Query 1319 TAAAGAGCAGAAGACAAACAACAAGTGGGACATGAGAGGTAAGGAGATTTTGGGAAACGA 1378 ||||||||||||||||||| ||| |||||| ||| |||||| |||| ||||||||||| Sbjct 1600 TAAAGAGCAGAAGACAAACGCCAACTGGGACTTGATAGGTAAAGAGAGATTGGGAAACGA 1659 Query 1379 CAAAGAACTTTGTCGTTTTGGATCTCTTTTCTCCATGGGATAGAACTAAACCACCTTTTT 1438 ||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| Sbjct 1660 CAAAGAACTTTGTCGTTTTGGATCTCTTTTCACCTTGGGATAGAACTAAACCACGTTTTT 1719 Query 1439 CACCTACGACCAAGATGGAAGTTGCGGTGGCAAAGCAAACATGCTCTCATGGGTTTGGTG 1498 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1720 CACCTACGACCAAGATGGAAGTTGCGGTAGCAAAGCAAACATGCTCTCATGGGTTTGGTG 1779 Query 1499 GGAAAATAGTTATT 1512 |||||||||| ||| Sbjct 1780 GGAAAATAGT-ATT 1792 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78212449110 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5