BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479960
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24503.1 | Symbols: ALDH2C4, ALDH1A, REF1 | aldehyde dehydro... 2569 0.0
> AT3G24503.1 | Symbols: ALDH2C4, ALDH1A, REF1 | aldehyde dehydrogenase
2C4 | chr3:8919560-8923073 REVERSE LENGTH=1722
Length=1722
Score = 2569 bits (1391), Expect = 0.0
Identities = 1510/1569 (96%), Gaps = 2/1569 (0%)
Strand=Plus/Plus
Query 1 agagagagagagaTATACAAAGAAAAATAAATGGAGAACGGCAAATGCAACGGAGGCACG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 15 AGAGAGAGAGAGAAATACAAAGAAAAATAAATGGAGAACGGCAAATGCAACGGAGCCACG 74
Query 61 ACGGTGAAGTTACCGGAGATCAAATTCACCAAGCTTTTCATCAACGGCCAGTTTC-TTGA 119
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 75 ACGGTGAAGTTACCGGAGATCAAATTCACCAAGCTTTTCATCAACGGCCAG-TTCATTGA 133
Query 120 TGCTGCTTCAGGGAAGACGTTTGAGACAATAGACCCAAGGAACGGTGAAGTGATCGCAAA 179
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 134 TGCTGCTTCAGGGAAGACGTTTGAGACGATAGACCCTAGGAACGGTGAAGTGATCGCAAC 193
Query 180 AATAGCCGAAGGAGATAAAGAAGACGTTGACTTGGCCGTTAAAGCTGCCCGTCACGCCTT 239
||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct 194 AATAGCCGAAGGAGACAAAGAAGACGTTGACTTGGCCGTTAACGCTGCACGTTACGCCTT 253
Query 240 CGACCATGGTCCTTGGCCTCGCATGACCGGCTTCGAAAGGGCAAAGCTTATAAACAAATT 299
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 254 CGACCATGGTCCTTGGCCTCGCATGACCGGCTTCGAGAGGGCAAAGCTTATCAACAAATT 313
Query 300 CGCAGACTTAATAGAGGAAAACATTGAAGAATTGGCTAAACTTGATGCAGTTGACGCCGG 359
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||
Sbjct 314 CGCAGACTTAATAGAGGAAAACATTGAGGAATTGGCTAAACTTGATGCGGTTGACGGTGG 373
Query 360 AAAATTGTTCCAGTTGGGGAAATTTGCTGATATTCCGGCCACAGCCGGTCATTTTCGATA 419
||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 374 AAAATTGTTTCAGTTGGGAAAATATGCTGATATTCCGGCCACAGCCGGTCATTTTCGATA 433
Query 420 CAATGCGGGTGCAGCGGATAAAATCCACGGCGAAACTCTTAAAATGACGCGTCAATCTTT 479
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 434 CAATGCGGGTGCAGCAGATAAAATCCACGGCGAGACTCTTAAAATGACGCGTCAATCTTT 493
Query 480 GTTCGGATACACCCTCAAAGAACCTATTGGAGTGGTTGGTAATATCATCCCTTGGAATTT 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 494 GTTCGGATACACCCTCAAAGAACCAATTGGAGTGGTTGGTAATATCATCCCTTGGAATTT 553
Query 540 CCCAAGCATTATGTTTGCCACAAAAGTGGCTCCGGCTATGGCTGCTGGTTGCACCATGGT 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 554 CCCAAGCATTATGTTTGCCACAAAGGTGGCTCCGGCTATGGCTGCTGGTTGCACCATGGT 613
Query 600 GGTCAAGCCAGCTGAACAGACCTCACTCTCTGCTCTGTTCTATGCCCATCTCTCAAAAGA 659
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 614 GGTCAAGCCAGCTGAACAGACTTCACTCTCTGCTTTGTTCTATGCCCATCTCTCAAAAGA 673
Query 660 AGCAGGAATTCCGGATGGTGTGCTCAACATTGTAACTGGTTTTGGATCAACTGCTGGAGC 719
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 AGCGGGAATTCCTGATGGTGTGCTCAACATTGTAACTGGTTTTGGATCAACTGCTGGAGC 733
Query 720 TGCCATTGCCTCCCATATGGACATAGACAAAGTTAGTTTCACTGGATCAACAGATGTTGG 779
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 734 TGCCATTGCCTCCCATATGGACGTAGACAAAGTTAGTTTCACTGGGTCAACAGATGTTGG 793
Query 780 AAGGAAGATAATGCAAGCCGCAGCCACAAGTAATCTCAAAAAAGTTTCCCTTGAATTGGG 839
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 794 AAGGAAGATAATGCAAGCCGCAGCCGCAAGTAATCTCAAAAAAGTTTCCCTTGAATTAGG 853
Query 840 CGGGAAATCGCCTCTTCTCATATTCGACGACGCTGATATTGATAAAGCCGCTGATCTTGC 899
|||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 854 CGGGAAATCGCCACTTCTCATATTCAACGACGCTGATATTGACAAAGCCGCCGATCTTGC 913
Query 900 GCTTCTCGGTTGCTTCTACAACAAGGGTGAGATTTGCGTGGCGAGCTCTCGTGTGTTTGT 959
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 914 GCTTCTCGGTTGCTTTTACAACAAGGGTGAAATTTGCGTGGCGAGCTCTCGTGTGTTTGT 973
Query 960 TCAAGAAGGTATATACGATAAGGTTGTGGAGAAGTTAGTGGAGAAGGCTAAAGATTGGAC 1019
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 974 TCAAGAAGGTATATACGATAAGGTTGTGGAGAAGTTAGTAGAGAAGGCTAAAGATTGGAC 1033
Query 1020 CGTTGGTGACCCTTTTGATTCCACTGCTCGACAAGGACCTCAAGTGGATAAAAGACAATT 1079
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1034 CGTTGGTGATCCTTTTGATTCCACTGCTCGACAAGGACCTCAAGTGGATAAAAGACAGTT 1093
Query 1080 TGAGAAGATTCTATCTTACATTGAGCACGGTAAAAACGAAGGAGCCACCTTATTAACTGG 1139
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1094 TGAGAAGATTCTATCTTACATTGAGCACGGTAAAAACGAAGGAGCGACCTTATTAACTGG 1153
Query 1140 AGGTAAAGCCATTGGAGACAAAGGATACTTCATCGAACCAACTATATTCGCAGATGTCAC 1199
||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1154 AGGAAAAGCCATTGGAGACAAAGGATATTTCATCCAACCAACTATATTCGCAGATGTCAC 1213
Query 1200 TGAGGATATGAAGATATACCAAGATGAAATCTTTGGACCAGTCATGTCATTGATGAAATT 1259
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1214 TGAGGATATGAAGATATACCAAGATGAAATCTTTGGACCAGTCATGTCACTGATGAAATT 1273
Query 1260 CAAGACGGTAGAAGAAGGGATCAAATGCGCAAACAACACGAAATACGGTCTTGCAGCAGG 1319
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 CAAGACGGTAGAGGAAGGGATCAAATGCGCAAACAACACGAAATACGGTCTTGCAGCAGG 1333
Query 1320 AATACTGAGCCAAAACATAGACTTGATCAACACGGTTTCGAGGTCAATCAAAGCTGGAAT 1379
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 AATACTAAGCCAAGACATAGACTTGATCAACACGGTTTCGAGGTCAATCAAAGCTGGAAT 1393
Query 1380 CATTTGGGTTAATTGCTATTTCGGGTTTGATCTTGATTGTCCTTACGGTGGCTACAAGAT 1439
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1394 CATTTGGGTTAATTGCTACTTCGGGTTTGATCTTGACTGTCCTTATGGTGGCTACAAGAT 1453
Query 1440 GAGTGGCAATTGTCGTGAAAGCGGCATGGATGCTCTTGACAACTATCTACAAACCAAATC 1499
|||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1454 GAGTGGTAATTGTCGTGAAAGTGGCATGGACGCTCTCGACAACTATCTACAAACCAAATC 1513
Query 1500 CGTCGTTATGCCTCTTCACAATTCCCCTTGGATGTAATAAAATTGGCCATAACATATAGA 1559
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1514 CGTCGTTATGCCTCTTCACAATTCCCCTTGGATGTAATAAAATTGTCCATAACACATAGA 1573
Query 1560 AGAAAACtt 1568
| |||||||
Sbjct 1574 AAAAAACTT 1582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80371072545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5