BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479964 Length=1661 Score E Sequences producing significant alignments: (Bits) Value AT3G24520.1 | Symbols: AT-HSFC1, HSFC1 | heat shock transcripti... 2002 0.0 AT3G24518.1 | Symbols: | other RNA | chr3:8941129-8942488 REVE... 1253 0.0 > AT3G24520.1 | Symbols: AT-HSFC1, HSFC1 | heat shock transcription factor C1 | chr3:8941066-8942874 FORWARD LENGTH=1725 Length=1725 Score = 2002 bits (1084), Expect = 0.0 Identities = 1241/1314 (94%), Gaps = 21/1314 (2%) Strand=Plus/Plus Query 363 aacaacaacaacaacaacaacGTGATCGCACCTTTCATTGTGAAAACATATCAAATGGTT 422 |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 408 AACAACAACAACAACAACAACGTGATCGCACCTTTCATCGTGAAAACATATCAGATGGTC 467 Query 423 AATGATCCTTTGACCGATTGGCTCATCACTTGGGGACCTGCTCACAACAGTTTCATAGTC 482 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 468 AATGATCCTTCCACCGATTGGCTCATCACTTGGGGACCTGCTCACAACAGTTTCATAGTC 527 Query 483 GTTGATCCACTCGACTTCTCGCAACGGATCTTACCTGCTTATTTCAAACACAACAATTTC 542 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 528 GTTGATCCACTCGACTTCTCGCAACGAATCTTACCTGCTTATTTCAAACACAACAATTTC 587 Query 543 AGCAGCTTCGTTCGTCAACTCAACACCTATGGGTTTAGGAAAGTGGATCCGGACCGGTGG 602 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 AGCAGTTTTGTTCGTCAACTCAACACCTATGGGTTTAGGAAAGTGGATCCGGACCGGTGG 647 Query 603 GAGTTTGCGAACGAGCATTTTCTGAGGGGACAGAAGCACTTGTTGAAGAACATAGCGCGT 662 ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| Sbjct 648 GAGTTTGCGAACGAGCATTTTCTAAGGGGACAGAAGCATTTGTTGAATAACATAGCGCGT 707 Query 663 AGGAAACACGCGCGAGGGATGTACGGTCAAGATTTGGAGGACGGTGAGATTGTGAGAGAG 722 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 708 AGGAAACACGCGCGGGGGATGTACGGTCAAGATTTGGAGGACGGTGAGATTGTGAGGGAG 767 Query 723 ATCGAACGGTTAAAAGAAGAGCAAAGGGAGCTAGAGGCAGAGATTCAGAGGATGAACCAA 782 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 768 ATCGAACGGTTAAAAGAAGAGCAGAGGGAGCTAGAGGCAGAGATTCAGAGGATGAACCGG 827 Query 783 AGGATCGAAGCGACGGAGAAGAGACCGGAGCAGATGATGGCGTTTCTTTACAAAGTCGTT 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 828 AGGATCGAAGCGACGGAGAAGAGACCGGAGCAGATGATGGCGTTTCTTTACAAAGTCGTT 887 Query 843 GAAGATCCTGATCTTCTTCCAAGAATGATGCTTGAGAAAGAACGGACAAAGCAACAA--- 899 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 888 GAAGATCCTGATCTTCTTCCAAGAATGATGCTCGAGAAAGAACGGACAAAGCAACAACAA 947 Query 900 ---GTTTCCGACAAGAAGAAGCGTCGTGTCACGATGTCGACGGTGAAAG-CAGAGGAGGA 955 |||||||||||||||||||||||||||||||||||||||||||| | ||||||| || Sbjct 948 CAAGTTTCCGACAAGAAGAAGCGTCGTGTCACGATGTCGACGGTGAA-GTCAGAGGAAGA 1006 Query 956 AGAAGTTGAAGAAGACGAAGGGAGGGTCTTTAGGGTTATTTCATCATCAACGCCGTCACC 1015 |||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| || Sbjct 1007 AGAAGTGGAAGAAGATGAAGGGAGGGTCTTTAGGGTTATGTCATCATCAACACCGTCGCC 1066 Query 1016 GTCGTCAACGGAGAATCTTTACCGGAATCATTCACCGGATGGGTGGGTTGTTCCCATGAC 1075 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 1067 GTCATCAACGGAGAATCTTTACCGGAATCATTCACCGGATGGGTGGATTGTTCCTATGAC 1126 Query 1076 GCAAGGACAGTTTGGTAATTACGAGACTGGTTTGGTGGCGAACTCGATGCTCTCGAATTC 1135 ||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1127 GCAAGGACAGTTTGGTAGTTACGAGACGGGTTTGGTGGCGAAGTCGATGCTCTCGAATTC 1186 Query 1136 AACGTCTTCGACGTCATCATCGTTGACCTCCACGTTTTCGTTACCGGAGAGTGTTAACgg 1195 |||||| |||||||||||||| ||||| || |||||||| || ||||||||||||||||| Sbjct 1187 AACGTCGTCGACGTCATCATCTTTGACGTCGACGTTTTCTTTGCCGGAGAGTGTTAACGG 1246 Query 1196 aggaggaggaggaggaTGTGGGAATATTCAGGGAGAAAGAAGGTATAAAGAAACGGCGAC 1255 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1247 AGGAGGAGGAGGAGGATGTGGGAGTATTCAGGGAGAAAGAAGGTATAAAGAAACGGCGAC 1306 Query 1256 GTTTGGAGGAGTGGTAGAGTCAAATCCACCAACAACACCGCCTTATCCGTTTTCTCTGTT 1315 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1307 GTTTGGAGGAGTGGTAGAGTCAAATCCACCAACAACACCGCCTTATCCATTTTCTCTGTT 1366 Query 1316 TCGAGGTGGCTTTTAGCGTTTAGCTTCACATGATATATGATCttta---tt-atg---gt 1368 |||||||||||||||||||||||||||||||||||||||||||||| || || || Sbjct 1367 TCGAGGTGGCTTTTAGCGTTTAGCTTCACATGATATATGATCTTTAGACTTTATTATTGT 1426 Query 1369 tctattattattattatttattatttgttt-tttgttcttaattattttatgtatAACCA 1427 | |||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||| Sbjct 1427 TATATTATTATTATTATTTATTTTTTGTGTGTTTGTTCTTAATTATTTTATGTATAACCA 1486 Query 1428 AAAGAAAGaaaaaaaaTAAGGACAGATCGATAGTTGAGTCAGTAGTCATCGTTTATAGAA 1487 ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1487 AAAGAAAGAAAGAAAATAAGGACAGATCCATAGTTGAGTCAGTAGTCATCGTTTGTAGAA 1546 Query 1488 AGTTTTGACAGTATATAATTTCTGATTATATTTGTTAGAAAGTTCATATGTTGACTTTGT 1547 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1547 AGTTTTGACAGTATATAATTTCTGATTATATTTGTTA-AAAGTTCATATGTTGACTTTGT 1605 Query 1548 TATTTGTTTTTAAAAGTATTTTCCAGGTGATTTGTGTAATATATCCATACTTTGTAATAA 1607 | || |||| ||||||| |||| |||||| ||||||||||||| || |||| ||||||| Sbjct 1606 T-TTCCTTTT-AAAAGTACTTTC-AGGTGACTTGTGTAATATATTCACACTT-GTAATAA 1661 Query 1608 CAACAATTTTCATCTTCTTCACTACTTGAGTGTTTTGATTTTTGAATAAAGTAT 1661 |||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct 1662 CAACAATTTTGATCTTCTTCACTACTTCAGTGTTTTGATTTTTGAATAAAGTAT 1715 Score = 363 bits (196), Expect = 4e-99 Identities = 280/316 (89%), Gaps = 23/316 (7%) Strand=Plus/Plus Query 22 ATTAAGAAAAAACACA-GCCT-AATAAT--A-ATA-TGC-AATGGATCAAATAACTTGTC 74 |||||||||||||| | |||| ||| || | ||| | | |||| |||| ||||||||| Sbjct 38 ATTAAGAAAAAACA-ATGCCTAAAT-ATGCATATATTTCAAATGTATCACATAACTTGTG 95 Query 75 ACATAAGAAATATATTAACaaaacaaaaagggcaaaaaaGACCTGAAAGCTTTGAGACAC 134 |||||||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 96 ACATAAGAAA-ATATAAACAAAACAAAAAGGGCAAAAAAGACCTGAAAGCTTAGAGGCAC 154 Query 135 ACCTGCATAGGTCCCACAGTTCACTCGTGACACCGTAAAA-GCAAAAACACGAACCCGCC 193 |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 155 ACCTGCATAGGTCCCACAGTTCACTCGTGACACCGTAAAAGGC-AAAACACGAACCCGCC 213 Query 194 ACGTTA-CACAAAAAGCAAGCCACGTCAATATAGTCTCACTGTCAACTACACTTAACTTA 252 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 214 ACGTTATCACAAAAAGCAAGCCACGTCAATATAGTCTCACTGTCAACTACACTTAACTTA 273 Query 253 CTATTTTCACATTTTATTTCCCTATTTTATTTTGTTTATATAAACC-TACCAGCCTCCTC 311 |||||||||||| | |||| ||||| || | ||||||||| | |||| |||||| Sbjct 274 CTATTTTCACATCTCATTTTCCTATCTT-T-------ATATAAACCCT-CCAGGCTCCTC 324 Query 312 CTTAATTTCTTTACCA 327 ||||||||||||||| Sbjct 325 TTTAATTTCTTTACCA 340 > AT3G24518.1 | Symbols: | other RNA | chr3:8941129-8942488 REVERSE LENGTH=1169 Length=1169 Score = 1253 bits (678), Expect = 0.0 Identities = 833/906 (92%), Gaps = 17/906 (2%) Strand=Plus/Minus Query 394 CTTTCATTGTGAAAACATATCAAATGGTTAATGATCCTTTGACCGATTGGCTCATCACTT 453 ||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||||||| Sbjct 900 CTTTCATCGTGAAAACATATCAGATGGTCAATGATCCTTCCACCGATTGGCTCATCACTT 841 Query 454 GGGGACCTGCTCACAACAGTTTCATAGTCGTTGATCCACTCGACTTCTCGCAACGGATCT 513 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 840 GGGGACCTGCTCACAACAGTTTCATAGTCGTTGATCCACTCGACTTCTCGCAACGAATCT 781 Query 514 TACCTGCTTATTTCAAACACAACAATTTC-AGC--A-GCTTCGTTCGTCAACTCAACACC 569 ||| || | | ||||| ||| | | | | | | | ||| | | | || Sbjct 780 TACATG-AAACTGGAAACA-GGGGATTACGAACTAATGATCCTTTC-TTTA-TTTAC-TT 726 Query 570 TATGGGTTTAGGAAAGTGGATCCGGACCGGTGGGAGTTTGCGAACGAGCATTTTCTGAGG 629 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 725 TAGGGGTTTAGGAAAGTGGATCCGGACCGGTGGGAGTTTGCGAACGAGCATTTTCTAAGG 666 Query 630 GGACAGAAGCACTTGTTGAAGAACATAGCGCGTAGGAAACACGCGCGAGGGATGTACGGT 689 ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 665 GGACAGAAGCATTTGTTGAATAACATAGCGCGTAGGAAACACGCGCGGGGGATGTACGGT 606 Query 690 CAAGATTTGGAGGACGGTGAGATTGTGAGAGAGATCGAACGGTTAAAAGAAGAGCAAAGG 749 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 605 CAAGATTTGGAGGACGGTGAGATTGTGAGGGAGATCGAACGGTTAAAAGAAGAGCAGAGG 546 Query 750 GAGCTAGAGGCAGAGATTCAGAGGATGAACCAAAGGATCGAAGCGACGGAGAAGAGACCG 809 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 545 GAGCTAGAGGCAGAGATTCAGAGGATGAACCGGAGGATCGAAGCGACGGAGAAGAGACCG 486 Query 810 GAGCAGATGATGGCGTTTCTTTACAAAGTCGTTGAAGATCCTGATCTTCTTCCAAGAATG 869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 GAGCAGATGATGGCGTTTCTTTACAAAGTCGTTGAAGATCCTGATCTTCTTCCAAGAATG 426 Query 870 ATGCTTGAGAAAGAACGGACAAAGCAACAA------GTTTCCGACAAGAAGAAGCGTCGT 923 ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 425 ATGCTCGAGAAAGAACGGACAAAGCAACAACAACAAGTTTCCGACAAGAAGAAGCGTCGT 366 Query 924 GTCACGATGTCGACGGTGAAAG-CAGAGGAGGAAGAAGTTGAAGAAGACGAAGGGAGGGT 982 |||||||||||||||||||| | ||||||| |||||||| |||||||| ||||||||||| Sbjct 365 GTCACGATGTCGACGGTGAA-GTCAGAGGAAGAAGAAGTGGAAGAAGATGAAGGGAGGGT 307 Query 983 CTTTAGGGTTATTTCATCATCAACGCCGTCACCGTCGTCAACGGAGAATCTTTACCGGAA 1042 |||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| Sbjct 306 CTTTAGGGTTATGTCATCATCAACACCGTCGCCGTCATCAACGGAGAATCTTTACCGGAA 247 Query 1043 TCATTCACCGGATGGGTGGGTTGTTCCCATGACGCAAGGACAGTTTGGTAATTACGAGAC 1102 ||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| Sbjct 246 TCATTCACCGGATGGGTGGATTGTTCCTATGACGCAAGGACAGTTTGGTAGTTACGAGAC 187 Query 1103 TGGTTTGGTGGCGAACTCGATGCTCTCGAATTCAACGTCTTCGACGTCATCATCGTTGAC 1162 |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 186 GGGTTTGGTGGCGAAGTCGATGCTCTCGAATTCAACGTCGTCGACGTCATCATCTTTGAC 127 Query 1163 CTCCACGTTTTCGTTACCGGAGAGTGTTAACggaggaggaggaggaggaTGTGGGAATAT 1222 || |||||||| || |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 126 GTCGACGTTTTCTTTGCCGGAGAGTGTTAACGGAGGAGGAGGAGGAGGATGTGGGAGTAT 67 Query 1223 TCAGGGAGAAAGAAGGTATAAAGAAACGGCGACGTTTGGAGGAGTGGTAGAGTCAAATCC 1282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66 TCAGGGAGAAAGAAGGTATAAAGAAACGGCGACGTTTGGAGGAGTGGTAGAGTCAAATCC 7 Query 1283 ACCAAC 1288 |||||| Sbjct 6 ACCAAC 1 Score = 346 bits (187), Expect = 4e-94 Identities = 246/272 (90%), Gaps = 14/272 (5%) Strand=Plus/Minus Query 55 AATGGATCAAATAACTTGTCACATAAGAAATATATTAACaaaacaaaaagggcaaaaaaG 114 |||| |||| ||||||||| |||||||||| |||| |||||||||||||||||||||||| Sbjct 1157 AATGTATCACATAACTTGTGACATAAGAAA-ATATAAACAAAACAAAAAGGGCAAAAAAG 1099 Query 115 ACCTGAAAGCTTTGAGACACACCTGCATAGGTCCCACAGTTCACTCGTGACACCGTAAAA 174 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1098 ACCTGAAAGCTTAGAGGCACACCTGCATAGGTCCCACAGTTCACTCGTGACACCGTAAAA 1039 Query 175 -GCAAAAACACGAACCCGCCACGTTA-CACAAAAAGCAAGCCACGTCAATATAGTCTCAC 232 || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1038 GGC-AAAACACGAACCCGCCACGTTATCACAAAAAGCAAGCCACGTCAATATAGTCTCAC 980 Query 233 TGTCAACTACACTTAACTTACTATTTTCACATTTTATTTCCCTATTTTATTTTGTTTATA 292 |||||||||||||||||||||||||||||||| | |||| ||||| || | ||| Sbjct 979 TGTCAACTACACTTAACTTACTATTTTCACATCTCATTTTCCTATCTT-T-------ATA 928 Query 293 TAAACC-TACCAGCCTCCTCCTTAATTTCTTT 323 |||||| | |||| |||||| ||||||||||| Sbjct 927 TAAACCCT-CCAGGCTCCTCTTTAATTTCTTT 897 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82077891075 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5