BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479967 Length=2274 Score E Sequences producing significant alignments: (Bits) Value AT3G24550.1 | Symbols: ATPERK1, PERK1 | proline extensin-like r... 3293 0.0 AT3G24540.1 | Symbols: | Protein kinase superfamily protein | ... 878 0.0 AT3G24400.1 | Symbols: | pseudogene, protein kinase family, co... 135 1e-30 > AT3G24550.1 | Symbols: ATPERK1, PERK1 | proline extensin-like receptor kinase 1 | chr3:8960258-8963568 FORWARD LENGTH=2377 Length=2377 Score = 3293 bits (1783), Expect = 0.0 Identities = 2090/2233 (94%), Gaps = 41/2233 (2%) Strand=Plus/Plus Query 1 CCATTGTCCAAATTCCTTA-C--CAAAAAACTCTACTCTCGGTGGCACCAGATCActcct 57 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1 CCATTGTCCAAATTCCTTATCAAAAAAAAACTCTACTCTCGGTGGCACCAGATCACTCCT 60 Query 58 cctctctcttctcctacctttttcacattctcttcttcttctctttctc-tcGTG----A 112 |||||||||||||||||||||||||||||||||||||| | || ||||| | | | | Sbjct 61 CCTCTCTCTTCTCCTACCTTTTTCACATTCTCTTCTTC-T-TC-TTCTCGT-GAGAAAAA 116 Query 113 -AAA-AGAGATTCTTTATTCATTAGATCGAAGAAGCAAAAATGTCCACAGCGCCGTCTCC 170 ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 117 GAAAGAGAGATTCTTTATTCATTAGATC---GAAGCAAAAATGTCCACAGCGCCGTCTCC 173 Query 171 AGGCACTActccat---ca---cca---tctcctcccacaaactcaacaaccaccactcc 221 |||||||||||||| || ||| ||||||||||||||||| |||||||||||||| Sbjct 174 AGGCACTACTCCATCACCATCTCCACCGTCTCCTCCCACAAACTCGACAACCACCACTCC 233 Query 222 tcct-c--catcttcctctcctcctcccaccacaactccttcttctcctccGCCGCCGCC 278 |||| | || | || ||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 234 TCCTCCAGCAGCCTCTTCTCCTCCTCCCACCACAACTCCTTCTTCTCCTCCTCCGTCGCC 293 Query 279 GTCAACTAATTCAACCActcctcctccttcttctcctttacctccttctcttcctcctcc 338 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 294 GTCAACTAATTCAACCTCTCCTCCTCCTTCTTCTCCTTTACCTCCTTCTCTTCCTCCTCC 353 Query 339 atctcctcctggatcttccactcctcctcttcctcaaccttctccctccgctcccatcac 398 ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 354 ATCTCCTCCTGGATCTTTAACTCCTCCTCTTCCTCAACCTTCCCCCTCCGCTCCCATCAC 413 Query 399 tccatctccaccgtctccttccactcctGGATCAAACCCTCGAAGCCCTCCATCTCCTAA 458 ||| |||||||||||||| |||| || ||||||||||||||||||||||||||||| Sbjct 414 TCCTTCTCCACCGTCTCCCACCACACC---CTCAAACCCTCGAAGCCCTCCATCTCCTAA 470 Query 459 CCAAGGACCACCAAACACTCCCTCAGGACCTACTCCTCGAACTCCATCTAACGCTAATCC 518 |||||||||||||||||||||||||||| |||||||| |||||||||| ||| |||| || Sbjct 471 CCAAGGACCACCAAACACTCCCTCAGGATCTACTCCTAGAACTCCATCAAACACTAAACC 530 Query 519 TTCGCCGCCGTCTGGTTCTTCCGATGGATTATCTACAGGAGTGGTCGTTGGAATCGCCAT 578 ||||||||||||| ||||||||||||||| ||||| ||||| || || ||||||||||| Sbjct 531 GTCGCCGCCGTCTGATTCTTCCGATGGATTGTCTACCGGAGTTGTGGTAGGAATCGCCAT 590 Query 579 TGGAGGAGTTGTTGCCCTTGTTGTATTGACTCTGATTTGTCTTCTCTGTAAGAAGAAACG 638 ||||||||| | | |||||| || |||||||||||||||||||||||||||||||||| Sbjct 591 TGGAGGAGTCGCTATTCTTGTTATACTGACTCTGATTTGTCTTCTCTGTAAGAAGAAACG 650 Query 639 AAGAAGAAGACATGACGATGAAGCTGCTTACTATGTTCCTCCTCCACCTCCTCCTTCTGG 698 |||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 651 AAGAAGAAGACACGACGATGAAGCTGCTTACTATGTTCCTCCT---CCTCCTCCATCTGG 707 Query 699 TCCCAAAGCTGGAGGACCTTACGGTGGACAACAACAGTATTGGCAACAACAAAACGCATC 758 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 708 TCCCAAAGCTGGAGGACCTTACGGTGGTCAACAACAGTATTGGCAACAACAAAACGCGTC 767 Query 759 ACGACCGTCAGATAATCACGTAGTGACGTCATTGCCACCACCTAAGCCTCCATCTCCACC 818 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 768 ACGGCCGTCAGATAATCATGTAGTGACGTCATTGCCACCACCTAAGCCTCCATCTCCACC 827 Query 819 ACGAAAACCTCCACCGCCTCCTCCACCACCGGCATTCATGAGCAGCAGTGGCGGTTCTGA 878 |||||||||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||| Sbjct 828 ACGAAAACCTCCTCCGCCACCTCCACCACCAGCATTCATGAGTAGCAGTGGTGGTTCTGA 887 Query 879 CTATTCGGATCTTCCGGTTCTTCCTCCACCATCTCCAGGGCTTGTGTTAGGATTTTCTAA 938 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 888 CTATTCGGATCTTCCGGTTCTTCCTCCACCATCTCCAGGGCTTGTGTTAGGCTTTTCTAA 947 Query 939 AAGCACTTTCACTTATGAGGAGCTGTCAAGAGCTACTAATGGCTTCTCTGAGGCTAATTT 998 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 948 AAGCACTTTCACTTATGAGGAGTTGTCGAGAGCTACTAATGGCTTCTCTGAGGCTAATTT 1007 Query 999 GTTGGGACAAGGCGGGTTTGGTTATGTGCATAAAGGTATATTGCCTAGTGGGAAAGAAGT 1058 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1008 GTTAGGACAAGGAGGGTTTGGTTATGTGCATAAAGGTATATTGCCTAGTGGGAAAGAAGT 1067 Query 1059 TGCTGTGAAACAGTTGAAAGCTGGAAGTGGTCAGGGAGAGAGAGAGTTTCAGGCTGAGGT 1118 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1068 TGCTGTGAAACAGTTGAAAGCTGGTAGTGGTCAGGGAGAGAGAGAGTTTCAGGCTGAGGT 1127 Query 1119 CGAGATTATTAGCAGAGTTCATCACAGGCATTTGGTTTCTCTTATTGGTTATTGTATGGC 1178 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1128 TGAGATCATTAGCAGAGTTCATCACAGGCATTTGGTTTCTCTTATTGGTTATTGTATGGC 1187 Query 1179 CGGTGTTCAGAGATTGCTTGTCTATGAGTTTGTCCCCAACAACAATCTTGAGTTTCACCT 1238 ||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1188 CGGTGTTCAAAGATTACTTGTCTATGAGTTTGTTCCAAACAACAATCTTGAGTTTCACCT 1247 Query 1239 CCATGGGAAGGGACGACCTACGATGGAATGGAGTACTAGATTGAAGATTGCTCTTGGATC 1298 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1248 CCATGGTAAGGGACGGCCTACGATGGAATGGAGTACTAGATTGAAGATTGCTCTTGGATC 1307 Query 1299 TGCTAAAGGACTTTCATATCTTCATGAAGACTGCAATCCGAAAATCATTCACCGTGATAT 1358 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1308 TGCTAAAGGACTTTCATATCTTCATGAAGATTGCAATCCGAAAATCATTCACCGTGATAT 1367 Query 1359 TAAGGCGGCAAATATACTTG-TAGATTTCAAGTTTGAAGCTAAGGTTGCTGATTTTGGTC 1417 ||||||| |||| ||| ||| | |||||||| |||||||||||||||||||| ||||||| Sbjct 1368 TAAGGCGTCAAACATA-TTGATTGATTTCAAATTTGAAGCTAAGGTTGCTGACTTTGGTC 1426 Query 1418 TTGCCAAGATTGCTTCTGATACAAACACTCATGTATCTACACGCGTGATGGGAACCTTTG 1477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1427 TTGCCAAGATTGCTTCTGATACAAACACTCATGTATCTACACGCGTGATGGGAACCTTTG 1486 Query 1478 GGTATTTGGCTCCAGAATATGCTGCAAGCGGAAAGCTCACAGAAAAGTCTGACGTTTTCT 1537 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1487 GGTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTCACAGAAAAGTCTGACGTTTTCT 1546 Query 1538 CATTTGGTGTTGTACTTTTGGAGCTTATAACCGGGAGGCGCCCTGTTGATGCAAACAATG 1597 ||||||| |||||||||||||| ||||| || |||||||||||||||||||| ||||||| Sbjct 1547 CATTTGGCGTTGTACTTTTGGAACTTATTACTGGGAGGCGCCCTGTTGATGCGAACAATG 1606 Query 1598 TCTATGTAGATGACAGCTTAGTTGACTGGGCACGTCCCTTACTTAACCGAGCATCTGAGG 1657 |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| Sbjct 1607 TCTATGTAGATGACAGCTTAGTTGACTGGGCACGACCATTGCTTAACCGAGCATCTGAGG 1666 Query 1658 AAGGAGATTTTGAGGGTTTGGCTGATTCAAAGATGGGTAACGAGTATGACAGAGAGGAAA 1717 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1667 AAGGAGATTTTGAGGGTTTGGCTGATTCAAAGATGGGTAATGAGTATGACAGAGAGGAGA 1726 Query 1718 TGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTC 1777 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 1727 TGGCTCGCATGGTTGCTTGCGCTGCGGCTTGTGTTCGCCATTCAGCTCGCCGCAGACCTC 1786 Query 1778 GCATGAGCCAGATAGTACGCGCCTTAGAAGGAAATGTATCGCTGTCTGATCTTAACGAAG 1837 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1787 GCATGAGCCAGATAGTACGGGCGTTAGAAGGAAATGTATCGCTGTCTGATCTTAACGAAG 1846 Query 1838 GGATGAGACCAGGTCACAGCAACGTCTACAGCTCATATGGAGGAAGCACAGACTATGACA 1897 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1847 GGATGAGACCGGGTCACAGCAACGTATACAGCTCATATGGAGGAAGCACAGACTATGACA 1906 Query 1898 CAAGCCAATACAACGACGACATGAAAAAGTTTAGGAAAATGGCACTAGGAACTCAAGAAT 1957 | |||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| Sbjct 1907 CGAGCCAATACAACGACGACATGATAAAGTTTAGGAAAATGGCTCTTGGAACTCAAGAAT 1966 Query 1958 ACGGCACAACCGGCGAGTACAGTAATCCAACAAGTGACTACGGACTGTACCCATCTGGTT 2017 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1967 ACGGCACAACCGGCGAGTACAGTAATCCAACCAGTGACTACGGACTGTACCCGTCTGGTT 2026 Query 2018 CGAGCAGCGAGGGTCAAGCCACACGAGAAATGGAGATGGGGAAGATTaaaaaaaCTGGTC 2077 | ||||| || ||||||||||||||||||||||||||||| |||||||| ||||| |||| Sbjct 2027 CAAGCAGTGAAGGTCAAGCCACACGAGAAATGGAGATGGGAAAGATTAAGAAAACCGGTC 2086 Query 2078 AAGGTTATAGTGGACCTTCTCTTTAAACCACAAGAGATG-AGAAAATTGCAGGGGTTTTT 2136 |||||||||||||||| ||||||||||||| ||||| || ||||| ||||||| ||||| Sbjct 2087 AAGGTTATAGTGGACCCTCTCTTTAAACCATAAGAG-TGGAGAAA-TTGCAGGTTTTTTT 2144 Query 2137 -GGATTCTTTTTCTTATTAACTGTAAAGATTTGAGGAAATTGCCTTACTCTCTAATTGAT 2195 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2145 TGGATTCTTTTTCTTATTAACTGTAAAGATTTGAGGAAATTGCCTTACTCTCTAATTGAT 2204 Query 2196 CTACTACGATATA 2208 |||||||||||| Sbjct 2205 TTACTACGATATA 2217 > AT3G24540.1 | Symbols: | Protein kinase superfamily protein | chr3:8952903-8955621 FORWARD LENGTH=1530 Length=1530 Score = 878 bits (475), Expect = 0.0 Identities = 790/939 (84%), Gaps = 34/939 (4%) Strand=Plus/Plus Query 938 AAAGCACTTTCACTTATGAGGAGCT-GTCAAGAGCTACTAATGGCTTCTCTGAGGCTAAT 996 |||||||||||||||| | |||||| | | ||||| || ||| ||||||||||| ||| Sbjct 491 AAAGCACTTTCACTTACGGGGAGCTAG-CTAGAGCCACCAATAAATTCTCTGAGGCCAAT 549 Query 997 TTGTTGGGACAAGGCGGGTTTGG-TTATGTGCATAAAGGTATATTGCCTAGTGGGAAA-G 1054 ||||| ||| | || || ||||| || || | |||||||||||| || | ||||| | Sbjct 550 TTGTTAGGAGAGGGTGGATTTGGATT-CGTATACAAAGGTATATTGAATAAT-GGAAATG 607 Query 1055 AAGTTGCTGTGAAACAGTTGAAAGCT-GGAAGTGGTCAGGGAGAGAGAGAGTTTCAGGCT 1113 ||||||| || ||||||||||||| | || |||| |||||| |||| ||||||||||||| Sbjct 608 AAGTTGCAGTTAAACAGTTGAAAG-TAGGGAGTGCTCAGGGTGAGAAAGAGTTTCAGGCT 666 Query 1114 GAGGTCGAGATTATTAG-CAGAGTTCATCACAGGCATTTGGTTTCTCTTATTGGTTATTG 1172 ||||| | |||||||| || | |||| || ||| |||||||||| ||| | |||||||| Sbjct 667 GAGGTTAATATTATTAGCCA-AATTCACCATAGGAATTTGGTTTCCCTTGTCGGTTATTG 725 Query 1173 TATGGCCGGTGTTCAGAGATTGCTTGTCTATGAGTTTGTCCCCAACAACAATCTTGAGTT 1232 || || |||| ||| ||||||||||||||||||||||| |||||||||| ||| ||||| Sbjct 726 CATCGCTGGTGCTCAAAGATTGCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGAGTT 785 Query 1233 TCACCTCCATGGGAAGGGACGACCTACGATGGAATGGAGTACT-AGATTGAAGATTGCTC 1291 ||||||||||||||| ||||| |||||||||||||||||| | ||||| ||||||||| Sbjct 786 TCACCTCCATGGGAAAGGACGGCCTACGATGGAATGGAGT-TTAAGATTAAAGATTGCTG 844 Query 1292 TTGGATCTGCTAAAGGACTT-TCATATCTTCATGAAGACTGCAATCCGAAAATCATTCAC 1350 | | ||| | |||||| || || |||||||||||| | |||||||| |||||||| ||| Sbjct 845 TCAGTTCTTCCAAAGGA-TTGTCTTATCTTCATGAAAATTGCAATCCTAAAATCATCCAC 903 Query 1351 CGTGATATTAAGGCGGCAAATATACTTG-TAGATTTCAAGTTTGAAGCTAAGGTTGCTGA 1409 |||||||| ||||||||||| ||| ||| | |||||||| |||||||| ||||||||||| Sbjct 904 CGTGATATCAAGGCGGCAAACATA-TTGATTGATTTCAAATTTGAAGCAAAGGTTGCTGA 962 Query 1410 TTTTGGTCTTGCCAAGATTGCTTCT-GATACAAACACTCATGTATCTACACGCGTGATGG 1468 ||||||||| ||||||||||||| | |||||||||||||||||||||||||| || |||| Sbjct 963 TTTTGGTCTCGCCAAGATTGCTT-TGGATACAAACACTCATGTATCTACACGTGTTATGG 1021 Query 1469 GAACCTTTGGGTATTTGGCTCCAGAATATGCTGCAAGCGGAAAGCTCACAGAAAAGTCTG 1528 |||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||| Sbjct 1022 GAACCTTTGGGTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTTACTGAAAAGTCTG 1081 Query 1529 ACGTTTTCTCATTTGGTGTTGTACTTTTGGAGCTTATAACCGGGA-GGCGCCCTGTTGAT 1587 | |||| |||||| || ||||||||||||||||| |||| ||||| | |||||||||||| Sbjct 1082 ATGTTTACTCATTCGGCGTTGTACTTTTGGAGCTAATAA-CGGGACGTCGCCCTGTTGAT 1140 Query 1588 GCAAACAATGTCTATGTAGATGACAGCTTAGTTGACTGGGCACGTCCCTTACTT-AACCG 1646 |||||||||||||||| ||||||||||| ||||| |||||||| || || ||| | | Sbjct 1141 GCAAACAATGTCTATGCGGATGACAGCTTGGTTGATTGGGCACGACCATTGCTTGTA-CA 1199 Query 1647 AGCATC-TG-AGGAAGGAGATTTTGAGGGTTTGGCTGAT-TCAAAGATGGGTAACGAGTA 1703 |||| | || || ||| | | ||||| |||||||||||| | |||| || ||| ||||| Sbjct 1200 AGCA-CTTGAAGAAAGTA-ACTTTGAAGGTTTGGCTGATAT-AAAGCTGAATAATGAGTA 1256 Query 1704 TGACAGAGAGGAAATGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGTTCGCCATTCAGC 1763 ||| ||||| || ||||||||||||||||||||||||||||||||||| ||| || |||| Sbjct 1257 TGATAGAGAAGAGATGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGTCCGCTATACAGC 1316 Query 1764 TCGCCGCAGACCTCGCATG-AGCCAGATAGTACGCGC-CTTAGAAGGAAATGTATCGCTG 1821 |||||| |||||||||||| | |||| | || || | || ||||||||| |||||| | Sbjct 1317 TCGCCGAAGACCTCGCATGGA-CCAGGTTGTGCGTGTGCT-AGAAGGAAACATATCGCCG 1374 Query 1822 TCTGATCTTAA-CGAAGGGATGAGACCAGGTCACAGCAA 1859 || ||||| || | ||||||| | ||| ||||||||||| Sbjct 1375 TCAGATCTGAATC-AAGGGATAACACCCGGTCACAGCAA 1412 > AT3G24400.1 | Symbols: | pseudogene, protein kinase family, contains Pfam PF00069: Protein kinase domain; blastp match of 72% identity and 1.7e-148 P-value to GP|13397640|emb|CAC34703.1||AX088876 unnamed protein product {Brassica napus} | chr3:8858484-8861822 REVERSE LENGTH=3339 Length=3339 Score = 135 bits (73), Expect = 1e-30 Identities = 79/82 (96%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1400 AGGTTGCTGATTTTGGTCTTGCCAAGATTGCTTCTGATACAAACACTCATGTATCTACAC 1459 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2079 AGGTTGCTGATTTTGGTCTTGCCAAGATTGCTTCTGATACAAATACTCATGTATCTACAC 2138 Query 1460 GCGTGATGGGAACCTTTGGGTA 1481 | ||||||||||| |||||||| Sbjct 2139 GTGTGATGGGAACTTTTGGGTA 2160 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 112850825160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5