BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479971
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24570.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 1343 0.0
AT3G24560.2 | Symbols: RSY3 | Adenine nucleotide alpha hydrolas... 143 3e-33
> AT3G24570.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22)
family protein | chr3:8966521-8968657 REVERSE LENGTH=989
Length=989
Score = 1343 bits (727), Expect = 0.0
Identities = 906/983 (92%), Gaps = 50/983 (5%)
Strand=Plus/Plus
Query 1 CTGTGTCAACCTCTTTCTTTTAACCAATCACAATCGCCTTCTTCCACGGCGG-T-T-C-T 56
|||| |||||||||||||| |||||||||||||||||||||||||||||||| | | | |
Sbjct 8 CTGTATCAACCTCTTTCTTCTAACCAATCACAATCGCCTTCTTCCACGGCGGCTCTCCGT 67
Query 57 C-C--GTCACAGGTCCCAA--------TCT--CGGCGACGGCGAAGACGACTGGTACATT 103
| | || ||||||||||| ||| ||||||||||||| ||| |||||||||
Sbjct 68 CACAGGTGACAGGTCCCAATCTCTCTCTCTCGCGGCGACGGCGAATACGGCTGGTACATA 127
Query 104 ATGTCGAAGCTTTGGAGATGGTATCAGCGATGCCTGACGGTTCATCCGGTGAAAACTCAG 163
|||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 128 ATGTTGAAGCTTTGGAGATGGTACCAGCGATGCCTGACGGTTCATCCTGTGAAAACTCAG 187
Query 164 GTCATCAGTTCTGGATTTCTTTGGGGATTTGGCGATGTCACCGCTCAATACATCACTCAC 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GTCATCAGTTCTGGATTTCTTTGGGGATTTGGCGATGTCACCGCTCAATACATCACTCAT 247
Query 224 TCCACTGCGAAACCTCGTCTTCTTCGTCTCACCGAAACAAATAAAGATGCTGACGCAGAT 283
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 TCCACTGCGAAACGTCGTCTTCTTCGTCTCACCGAAACAAATAAAGATGCTGACGCAGAT 307
Query 284 GCAGAA-TTCAAAGTCAACTGGAAGCGAG-T--AGC-T--A---TCA-C-G-A-GC-A-T 327
|||||| || || ||||| ||||||| || | || | | ||| | | | || | |
Sbjct 308 GCAGAAATT-AAGGTCAAGTGGAAGCAAGATGCAGAATTCAAAGTCAACTGGAAGCGAGT 366
Query 328 -GTT-T---G-G---GTTTGG-TTT--T---GTCGGACCTGTTGGCCACTTCTGGTACGA 372
| | | | | |||||| ||| | |||||||||||||||||||||||||||||
Sbjct 367 AGCTATCACGAGCATGTTTGGATTTGGTTTTGTCGGACCTGTTGGCCACTTCTGGTACGA 426
Query 373 AGGCCTGGATAAATTCATAAAACTGAAGCTTCGATATGTACCAAAGTCAACACGTTTTGT 432
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 AGGCTTGGATAAATTCATAAAACTGAAGCTTCGATATGTACCAAAGTCAACACGTTTTGT 486
Query 433 AGCTGCCAAAGTTGCAATGGATGGTCTTATCTTTGGGCCTATAGATCTACTGGTGTTCTT 492
|||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 487 AGCTGCAAAAGTTGCAATGGATGGTCTTATCTTTGGACCTGTAGATCTACTGGTGTTCTT 546
Query 493 CACATACATGGGATTCGCCACAGGTAAGAACACAGCTGAAGTGAAAGAAGGACTCAAGAG 552
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 547 CACATACATGGGATTCGCCACAGGAAAGAACACAGCTGAAGTGAAAGAAGGACTCAAGAG 606
Query 553 AGATTTTCTTCCGGCTCTAGCTCTTGAAGGCGGAGCATGGCCACTTCTTCAGATTGCAAA 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AGATTTTCTTCCGGCTCTAGCTCTTGAAGGCGGAGCATGGCCACTTCTTCAGATTGCAAA 666
Query 613 CTTCAGATATGTTCCCGTGCAATACCAGTTGCTTTACGTCAACATCTTTTGCCTAGTAGA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTTCAGATATGTTCCCGTGCAATACCAGTTGCTTTACGTCAACATCTTTTGCCTAGTAGA 726
Query 673 CAGTGCCTTCCTCTCATGGGTCGAGCAACAAAAGGACGCAGCTTGGAAGCAATGGTTTAC 732
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 727 CAGTGCCTTCCTCTCATGGGTCGAGCAACAGAAGGACGCAGCTTGGAAGCAATGGTTTAC 786
Query 733 TTCATCATTTCAACCATTAAAAGAACGAGGTGGCCAAGGCGGAGTATGATCGTTTTCCCT 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TTCATCATTTCAACCATTAAAAGAACGAGGTGGCCAAGGCGGAGTATGATCGTTTTCCCT 846
Query 793 GTCATAAACTTTGAATGAAAACAAAAACGAGTGTAATTGGCGATTTTCAATAATGAAAGT 852
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 847 GTCATAAACTTTGAATGAAAACAAAAACGAGTGTAATTGGCGATTTTCAATAACGGAAGT 906
Query 853 TGCCTAGGATACAGATTCTTGA-TCAAATATTATTTTGTTTCACAAGAATTCAGTACAAG 911
|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||
Sbjct 907 TGCCTAGGATACAGATTCTTGAATCAAATATTATTTCGTTTCACGAGAATTCAGTACAAG 966
Query 912 TGAATAAATGTCTGTTAGAATTG 934
|||||||||||||||||| ||||
Sbjct 967 TGAATAAATGTCTGTTAGTATTG 989
> AT3G24560.2 | Symbols: RSY3 | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr3:8963770-8966616 FORWARD
LENGTH=2123
Length=2123
Score = 143 bits (77), Expect = 3e-33
Identities = 90/96 (94%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 840 CAATAATGAAAGTTGCCTAGGATACAGATTCTTG-ATCAAATATTATTTTGTTTCACAAG 898
|||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 2123 CAATAACGGAAGTTGCCTAGGATACAGATTCTTGAATCAAATATTATTTCGTTTCACGAG 2064
Query 899 AATTCAGTACAAGTGAATAAATGTCTGTTAGAATTG 934
||||||||||||||||||||||||||||||| ||||
Sbjct 2063 AATTCAGTACAAGTGAATAAATGTCTGTTAGTATTG 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5