BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480058 Length=713 Score E Sequences producing significant alignments: (Bits) Value AT2G04039.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1018 0.0 > AT2G04039.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2996 (InterPro:IPR021374); Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:1333262-1334566 FORWARD LENGTH=932 Length=932 Score = 1018 bits (551), Expect = 0.0 Identities = 672/728 (92%), Gaps = 18/728 (2%) Strand=Plus/Plus Query 1 ATGGAGAAAAACTGAGAA-TTTGAGAATAACGAATCTTGTTATCGTTGAAGAAACTCAAT 59 |||||||||||||||||| |||||||| |||||||||||| |||||||||||| |||||| Sbjct 119 ATGGAGAAAAACTGAGAATTTTGAGAACAACGAATCTTGTAATCGTTGAAGAAGCTCAAT 178 Query 60 TACAGTTTCTATTTCTTCCTGAA-TATGGCAGCAATAGCAGGAGGATCATTTGGAGTCCC 118 |||||||||| ||||||||| || ||||||| |||||||||||||||||||||||||||| Sbjct 179 TACAGTTTCTGTTTCTTCCT-AATTATGGCAACAATAGCAGGAGGATCATTTGGAGTCCC 237 Query 119 AAGCTCTCGTATCTCTATAGCCACTCCAACTCTCTCTTCCTCTTCTTTGCTTCCACCACT 178 ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| Sbjct 238 AAGCTCTCGTATCTCTATAACAACACCAACTCTCTCTTCCTCTTCTTTGCTTCCACCACT 297 Query 179 AACATTGCAATCAGGTACTAGAAAGGACAACCAATTGCGGTGTGCCGTGCAAGAGTCTTC 238 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 298 AACATTGCAATCAGGTACTAGAAAGGACAACCTTTTGCGGTGTGCCTTGCAAGAGTCTTC 357 Query 239 CACTTCTGCTGTCACTACTGAGAAGAAAGATAAAGAAG-ACAAAAATGAGTCAACAGTGG 297 ||||||||||| ||||||| |||||| | ||||||| | | || ||||||||||||| Sbjct 358 AACTTCTGCTGTTGCTACTGAAAAGAAAAACAAAGAAGAAGGAGAA-GAGTCAACAGTGG 416 Query 298 CGGTTCCGGCAAAGAAACCTAAACCCGCAGCT------GC-G--GTGGCGAAACCGCTGA 348 |||||||||||||||||||||||||||||||| || | |||||||||||||||| Sbjct 417 CGGTTCCGGCAAAGAAACCTAAACCCGCAGCTAAAGCGGCTGCAGTGGCGAAACCGCTGA 476 Query 349 GACAAATGATGGAAGAAGATGTGATTCCTCCTTTAAAAGCCATTCTTGAATCTCAAGATG 408 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 477 GACAAATGATGGAAGAAGACGTGATTCCTCCTTTACAAGCCATTCTTGAATCTCAAGATG 536 Query 409 ATATCTCTGAGATCGATTTATCTTACCAAGACGATAAGTTGGAAGGTTTTTTCTTGAAGA 468 |||||||||| || |||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 537 ATATCTCTGACATAGATTTATCTTTCCAAGACGATAAGTTGGAAGGTTTTTTCTTAAAGA 596 Query 469 AAAGTATTCCATATTCCTTTTGGG-CTTTCTTCCCTACTGGAAACCTTACA-G-GAGCAA 525 |||||||||||||||||||||||| |||| ||||||||||||||||||||| | || ||| Sbjct 597 AAAGTATTCCATATTCCTTTTGGGCCTTT-TTCCCTACTGGAAACCTTACAGGTGAACAA 655 Query 526 AAGGATTTTCAATTTCCTCACACGGGTCAGGTCCGAGCACCGTGGAGCCGTTTCTCGTTG 585 |||||||||||||||||||||||||||||||||||||||||||||| || ||||| || | Sbjct 656 AAGGATTTTCAATTTCCTCACACGGGTCAGGTCCGAGCACCGTGGAACCATTTCTTGTCG 715 Query 586 ACGAGAGGAAACCAACCGCAAACCACGTTGTGTTTTGGGTCGAGAAGCGCCTCGCTGCAC 645 |||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||| Sbjct 716 ACGAGAGGAAACCAACTGCGAACCACGTTGTGTTTTGGGTCGAGAAGCGTCTTGCTGCAC 775 Query 646 AAGGGATCATTCCTGTTTGGAACCAATGAGGTTTTTATTCACTTGTAATTATTACATTTG 705 |||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 776 AAGGGATCATCCCCGTTTGGAACCAATGAGGTTTTTGTTCACTTGTAATTATTACATTTG 835 Query 706 TATACCAA 713 |||||||| Sbjct 836 TATACCAA 843 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34561093136 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5