BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480076 Length=702 Score E Sequences producing significant alignments: (Bits) Value AT2G04260.1 | Symbols: | pseudogene, BS1-related mitochondrial... 918 0.0 AT1G43910.1 | Symbols: | P-loop containing nucleoside triphosp... 501 4e-141 > AT2G04260.1 | Symbols: | pseudogene, BS1-related mitochondrial protein, blastp match of 53% identity and 8.5e-45 P-value to GP|17385707|dbj|BAB78658.1||AP003022 P0681B11.25 {Oryza sativa (japonica cultivar-group)} | chr2:1470757-1471477 FORWARD LENGTH=721 Length=721 Score = 918 bits (497), Expect = 0.0 Identities = 642/711 (90%), Gaps = 14/711 (2%) Strand=Plus/Plus Query 1 ATGGTGGCTGCAATAGCTAATCACATGAACTACAATATCTATGATCTCCAGATTCAGAGT 60 ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGTGGCTGCTATAGCTAATCACATGAACTGCAATATCTATGATCTCCAGATTCAGAGC 60 Query 61 GTTAGAGATGATGGTGAGTTGCGGGA-GATTCTTACCGCCACCAAGAACAGGTCAATTCT 119 |||| |||||||| |||||||| ||| | |||| ||||||||||| ||||| |||||||| Sbjct 61 GTTAAAGATGATGCTGAGTTGC-GGAGGGTTCTCACCGCCACCAATAACAGATCAATTCT 119 Query 120 TCTCATTGAAGACATTGATTGTGG-AGCTGATGCATCTCGTAGACGCCAGACCAAAAATG 178 |||||||||||||||||||||||| | ||||| | ||||||||||||||||||||||||| Sbjct 120 TCTCATTGAAGACATTGATTGTGGTA-CTGATTCGTCTCGTAGACGCCAGACCAAAAATG 178 Query 179 AAGAAGATGTTGAGCTCCAAAAGCAAAAGAAGAAGCCTGACCTTGGGGTAAGTTGACAA- 237 ||||||||| | || || ||||| |||| || |||||||||||||||||||||||| || Sbjct 179 AAGAAGATGATAAGGTCAAAAAGAAAAAAAAAAAGCCTGACCTTGGGGTAAGTTGA-AAT 237 Query 238 AATTCCTCTG-tt-t--ttttAATAACCTCTCTGTTTTTGAACCTTATGAATCTTCTTTC 293 ||||||||| || | ||||| |||||||||||||||||||||| |||||||||||||| Sbjct 238 GATTCCTCTGTTTCTAATTTTATTAACCTCTCTGTTTTTGAACCTAATGAATCTTCTTTC 297 Query 294 TTGTGGACAGATATCTTTGTCTGGTCTATTGAACTTTGTAGACGGGCTTTGGTCGAGTTG 353 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 298 TTGTGGACAGATATCTTTGTCTGGTCTATTGAACTTTGTAGACGGTCTTTGGTCGAGCTG 357 Query 354 CGGAGAAGAAAAAATCATAATTTTCACTACTAATCACAAGGAGAAGCTCGACCCGGCGTT 413 |||||||||| ||||||||||||||| || ||| |||||||||||||||||||||| || Sbjct 358 TGGAGAAGAAAGAATCATAATTTTCACAACCAATTACAAGGAGAAGCTCGACCCGGCATT 417 Query 414 ACTTAGACCGGGAAGAATGGATGTTCACATTCTCATGGACAATTGTACTCCCTTTGTGTT 473 || || || |||||||||||||||||||||||||||||| |||| ||||| ||||| || Sbjct 418 GCTGAGGCCCGGAAGAATGGATGTTCACATTCTCATGGACTATTGCACTCCATTTGTCTT 477 Query 474 CAAGAAGCTTGTGGCTATGTACCTTAAAACTGATGACCATGTCCTGTTTGATCCCATCGA 533 ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| || Sbjct 478 GAAGAAGCTTGTGGCTATGTACCTCAAAATTGATGACCATGTCCTGTTTGATCCCATTGA 537 Query 534 GAAACTTGTCATTGATGTGAGTGTAACTCCGGCTGAAGTCACGCAGCAGCTCATGGCGAG 593 ||| |||||| |||| |||||||||||||| ||||||||| ||||||||||||||| ||| Sbjct 538 GAAGCTTGTCCTTGAGGTGAGTGTAACTCCTGCTGAAGTCGCGCAGCAGCTCATGGTGAG 597 Query 594 TAAGAACGCTGATGTCGCGCTTAAAGGTCT-ACTCGAATTCCTCGAAAACAAGAAGAT-G 651 ||||||| ||||| | ||||| |||||||| | |||||||| ||||||| |||||||| | Sbjct 598 TAAGAACACTGATATTGCGCTCAAAGGTCTCA-TCGAATTCATCGAAAAAAAGAAGATAG 656 Query 652 AAGAAGGAAGAAGATGCCAAAGTTGAGGAAGAGGGTGAGATTGAAGATGCT 702 || |||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 657 AA-AAGGAAGAAGTTACCAAAGTTGAGGAAGAGGGTGAGATTGAAGATGCT 706 > AT1G43910.1 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:16655884-16657658 REVERSE LENGTH=1624 Length=1624 Score = 501 bits (271), Expect = 4e-141 Identities = 360/403 (89%), Gaps = 6/403 (1%) Strand=Plus/Plus Query 303 GATATCTTTGTCTGGTCTATTGAACTTTGTAGACGGGCTTTGGTCGAGTTGCGGAGAAGA 362 |||||||||||||||||||||||||||||| || || |||||||| ||||| |||||||| Sbjct 1035 GATATCTTTGTCTGGTCTATTGAACTTTGTTGATGGACTTTGGTCAAGTTGTGGAGAAGA 1094 Query 363 AAAAATCATAATTTTCACTACTAATCACAAGGAGAAGCTCGACCCGGCGTTACTTAGACC 422 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1095 GAAAATCATAATTTTCACTACTAATCACAAGGAGAAGCTCGACCCGGCGTTGCTTAGACC 1154 Query 423 GGGAAGAATGGATGTTCACATTCTCATGGACAATTGTACTCCCTTTGTGTTCAAGAAGCT 482 ||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1155 AGGACGGATGGATGTTCATATTCTCATGGACAATTGTACTCCCTTTGTGTTCAAGAAGCT 1214 Query 483 TGTGGCTATGTACCTTAAAACTGATGACCATGTCCTGTTTGATCCCATCGAGAAACTTGT 542 ||||||| ||||||||||||| ||||| |||||| ||||||||||||| ||||| || | Sbjct 1215 TGTGGCTTTGTACCTTAAAACCGATGAGCATGTCTTGTTTGATCCCATTGAGAAGCTCAT 1274 Query 543 -CATTGATGTGAGTGTA-ACTCCGGCTGAAGTCACGCAGCAGCTCATGGCGAGTAAGAAC 600 | |||| |||||| | ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1275 TC-TTGAAGTGAGT-TCGACTCCCGCTGAAGTCACGCAGCAGCTCATGGCGAGTAAGAAC 1332 Query 601 GCTGATGTCGCGCTTAAAGGTCTA-CTCGAATTCCTCGAAAACAAGAAGATGAAGAAGGA 659 |||||| ||||||||||||| || || |||||| | || ||||||||| |||| |||| Sbjct 1333 GCTGATATCGCGCTTAAAGGCCTTGCT-GAATTCTTGGAGAACAAGAAGTTGAAAAAGGG 1391 Query 660 AGAAGATGCCAAAGTTGAGGAAGAGGGTGAGATTGAAGATGCT 702 ||||||| | | || ||||||||||| ||||||||||||||| Sbjct 1392 AGAAGATTCTAGTGTGGAGGAAGAGGGAGAGATTGAAGATGCT 1434 Score = 215 bits (116), Expect = 5e-55 Identities = 167/191 (87%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 1 ATGGTGGCTGCAATAGCTAATCACATGAACTA-CAATATCTATGATCTCCAGATTCAGAG 59 ||||| ||||| || |||||||| ||||| || | ||||||||||||| |||||||| || Sbjct 793 ATGGTAGCTGCCATTGCTAATCATATGAAGTATC-ATATCTATGATCTTCAGATTCAAAG 851 Query 60 TGTTAGAGATGATGGTGAGTTGCGGGAGATTCTTACCGCCACCAAGAACAGGTCAATTCT 119 |||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||||| Sbjct 852 TGTTAGAGATGATGGTGAGTTGCGGGAGATTCTTACTTCGACCAAGAACCGGTCGATTCT 911 Query 120 TCTCATTGAAGACATTGATTGTGGAGCTGATGCATCTCGTAGACGCCAGACCAA-AA-AT 177 ||| |||||||| |||||||||||||||||||| ||||||||||| |||| || || | Sbjct 912 TCTTATTGAAGATATTGATTGTGGAGCTGATGCTTCTCGTAGACGTCAGAGTAAGAAGAA 971 Query 178 G-AAGAAGATG 187 | ||||||||| Sbjct 972 GGAAGAAGATG 982 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34008517519 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5