BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480170
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05520.1 | Symbols: GRP-3, ATGRP-3, GRP3, ATGRP3 | glycine-r... 754 0.0
> AT2G05520.1 | Symbols: GRP-3, ATGRP-3, GRP3, ATGRP3 | glycine-rich
protein 3 | chr2:2026162-2027099 FORWARD LENGTH=710
Length=710
Score = 754 bits (408), Expect = 0.0
Identities = 622/716 (87%), Gaps = 52/716 (7%)
Strand=Plus/Plus
Query 1 CATCACTTGTCTT-TCCATAATAAGAGAGTTTTAAGAAGTTG------AAAAAATGGCTT 53
|||||||||| || |||||||||||||||||||||| | ||| ||||||||||||
Sbjct 4 CATCACTTGT-TTCTCCATAATAAGAGAGTTTTAAGCATTTGAAACAAAAAAAATGGCTT 62
Query 54 CCAAGGTTTTGGTTCTGTTGGGTCTCTTTGCTGTTCTTCTCGTTGTCTCGGAAATGGCCG 113
|||||| |||||||||||||||||||||||||||||||||||| ||||| ||| | ||||
Sbjct 63 CCAAGGCTTTGGTTCTGTTGGGTCTCTTTGCTGTTCTTCTCGTCGTCTCAGAAGTAGCCG 122
Query 114 CGGCATCATCAGGCACAGTGAAGTCGGAGAGTAAGGAAACTGTGAAACCTGATCAACGTG 173
||||||| || | ||||||||| || |||||||||||||||||||||||||||||||
Sbjct 123 CGGCATCTTCTGCCACAGTGAATTCAGAGAGTAAGGAAACTGTGAAACCTGATCAAC--- 179
Query 174 GTGGTGGCTACGGTGGCAATGGAGGAAATTATAATAACggaggaggttaccaaggaggag 233
|||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 180 ---GTGGCTACGGTGACAATGGAGGAAATTACAATAACGGAGGAGGTTACCAGGGAGGAG 236
Query 234 gagg--a-taccaaggaggaggagg--aggacacaa--cggaggagg---ttaccaagga 283
| || | ||||||||||||||||| | || ||| |||||||| ||||||||||
Sbjct 237 GGGGTAATTACCAAGGAGGAGGAGGTAATTAC-CAAGGAGGAGGAGGTAATTACCAAGGA 295
Query 284 ggagga-g--gataccaaggaggaggagga-gg-acacaa--cggagga-g--gatacca 333
|||||| | |||||||||||||||||||| || || ||| |||||| | |||||||
Sbjct 296 GGAGGAGGAAGATACCAAGGAGGAGGAGGACGGTAC-CAAGGAGGAGGAGGACGATACCA 354
Query 334 aggaggagg-aggc--c-a--cggaggggg-a------g--gTTACTGCCGCTACGGCTG 378
|||||| || ||| | | |||||||| | | ||||||||||| |||||||
Sbjct 355 AGGAGGCGGTGGGCGACAAGGAGGAGGGGGAAGTGGGGGAAGTTACTGCCGCCACGGCTG 414
Query 379 CTGCTACAGAGGTTACCGTGGCTGCTCAAGGTGCTGCTCGTATGCCGGAGAAGCTGTTCA 438
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 415 CTGCTACAGAGGTTACAACGGCTGCTCAAGATGCTGCTCGTATGCCGGAGAAGCTGTTCA 474
Query 439 GACTCAGCCCGGTCACTAAAACAATATATTCACCAATAACCACCATGCATG-ATTGCATT 497
|||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 475 GACTCAGCCCGGTCACTAAAACAATATATTAACCAATCACCACCATGCATGTATTGCATT 534
Query 498 ATGTGTGTGTGATTTTAAGTAAACCATGGTGCGTTTGTAATGAAGTGCCTCAAGTTTTTG 557
|||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 535 ATGTATGTATGATTTTAAGTAAACCATGGTGCGTTTGTAATGAACTGCCTCAAGTTTTTG 594
Query 558 AGGCAATATAGATTAAGAAGAAAACTATGGGAATAAAGTTTGATGATGTCATGTTTTATG 617
||||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||||||
Sbjct 595 AGGCACTATAGATTAAGAAGAGAACTATGGGAATAAAGTTTGATTATGTAATGTTTTATG 654
Query 618 TAGTTTGAGTTGTAATCCCTGTTGTTTGCATAATAAAATCGTTAGTAGTTTATGTT 673
| |||||||||||||| | || ||||||||||||||||||||| ||||||||||||
Sbjct 655 TGGTTTGAGTTGTAATACTTGCTGTTTGCATAATAAAATCGTTTGTAGTTTATGTT 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32702429697
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5