BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480184
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05620.1 | Symbols: PGR5 | proton gradient regulation 5 | ch... 1125 0.0
> AT2G05620.1 | Symbols: PGR5 | proton gradient regulation 5 |
chr2:2081009-2081858 REVERSE LENGTH=768
Length=768
Score = 1125 bits (609), Expect = 0.0
Identities = 723/773 (94%), Gaps = 28/773 (4%)
Strand=Plus/Plus
Query 1 AGAATCATATTTGTGGCTCTGGTTTCTCCATCCAAACCAAAACAACACCCAAACCTTGTC 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 AGAATCATATTTGTGGCTCTGGTTTCTCCATCCAAACAAAAACAACACCCAAACCTTGTC 60
Query 61 CACACCAAAATGTTAAACTCAAAATCCAACCACACACACTCAATTTCTCTTCCTCTCTAC 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CACACCAAAATGTTAAACTCAAAATCCAACCACACACACACAATTTCTCTTCCTCTCTAC 120
Query 121 CATT-A-A-C-ATC------A---A-AGAGCGA--GAGAAGCTGATTGATTATGGCTGCT 164
|||| | | | ||| | | |||| || |||||||||||||||||||||||||
Sbjct 121 CATTAACATCGATCAGAAAGACCGAGAGAGAGAGGGAGAAGCTGATTGATTATGGCTGCT 180
Query 165 GCTTCGATTTCTGCAACT-GGATGTAATCAAACTTTGCTCA-GAACTTCCTTCTATGGAG 222
|||||||||||||||| | |||||||||||||||||| | | ||||||||||||||||||
Sbjct 181 GCTTCGATTTCTGCAA-TAGGATGTAATCAAACTTTGAT-AGGAACTTCCTTCTATGGAG 238
Query 223 GTTGGGGAAGTTCCATCTCCGGAGAAGATTACCAAACCATGCTCTCCAAGACAGTTGCGC 282
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GATGGGGAAGTTCCATCTCCGGAGAAGATTACCAAACCATGCTCTCCAAGACAGTTGCGC 298
Query 283 CACCGCAACAAGCTAGAGTCTCACGTAAAGCAATCAGAGCAGTACCTATGATGAAGAATG 342
||||||||||||| ||||||||| | ||||||||||||||||| || |||||||||||||
Sbjct 299 CACCGCAACAAGCCAGAGTCTCAAGGAAAGCAATCAGAGCAGTTCCAATGATGAAGAATG 358
Query 343 TCAATGAAGGCAAAGGCTTATTTGCACCACTTGTCGTTGTCACACGCAACATAGTAGGCA 402
|||||||||||||||||||||||||||| || || ||||||||||||||| |||||||||
Sbjct 359 TCAATGAAGGCAAAGGCTTATTTGCACCTCTAGTTGTTGTCACACGCAACCTAGTAGGCA 418
Query 403 AGAAGAGGTTTAATCAGCTCAGAGGAAAAGCCATTGCCTTACACTCTCAGGTGATCACTG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGAAGAGGTTTAATCAGCTCAGAGGAAAAGCCATTGCCTTACACTCTCAGGTGATCACTG 478
Query 463 AGTTTTGCAAATCGATTGGAGCTGATGCAAAACAGAGACAAGGGCTTATCAGGCTTGCTA 522
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 AGTTTTGCAAATCGATTGGAGCAGATGCAAAACAGAGACAAGGGCTTATCAGGCTTGCTA 538
Query 523 AGAAGAATGGAGAGAGGCTTGGCTTCCTTGCTTAGGTTTTAAAAAGAACAAATCTTTCTC 582
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 539 AGAAGAATGGAGAGAGGCTTGGTTTCCTTGCTTAGGTCTTAAAAAGAACAAATCTTTCTC 598
Query 583 TCTGCTTTTGTCTG-TATA--CACTCACT-CTCCTCTTGTTGTTCTTGTCTAGATGTATT 638
||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 599 TCTGCTTGTGTCTGATATATACACTCACAACTCCTCTTGTTGTTCTTGTCTAGATGTATT 658
Query 639 TTGTCCAAACCTATAATCTTGATTTTTGTTACATTGCCTTTTGAGGGTTACTCAA-CACA 697
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 659 TTGTCCAAACCTATAATCTTGATTTTTGTTACATTGCCTTT-GAGGGTTACTCAAACACA 717
Query 698 CATTACTGCTTCCATTCTCATCTGAAAGTTGTTGTTCAATAAGGTCTTAGCTG 750
||| |||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 718 CATAACTGCTGCCATTCTCATCTGAAAA--GTTGTTCAATAAGGTCTTAGCTG 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5