BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480193
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
AT2G05790.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2638 0.0
> AT2G05790.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr2:2199219-2201486 FORWARD LENGTH=1843
Length=1843
Score = 2638 bits (1428), Expect = 0.0
Identities = 1696/1821 (93%), Gaps = 35/1821 (2%)
Strand=Plus/Plus
Query 1 AAGGTGATGCAAATTATTTGACATGTCACATGTG----AAAATAAATCTCAATACTAAAA 56
||| |||| || |||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 16 AAGATGATACACATTATTTGACATGTCACATGTGAAAAAAAAAAAATCTCAATACTAAAA 75
Query 57 TAAGAACCTAAT-AATTTATTCACTTATTGATTCCCTT-TGGATAATAATAAGACACAGT 114
|||| ||||||| || ||||||||||||| ||| ||| |||||||||||||||| ||||
Sbjct 76 TAAGTACCTAATCAA-TTATTCACTTATTAATT-TCTTCTGGATAATAATAAGACCCAGT 133
Query 115 CTTCTTTAccactctccacaacaccactctctctttctctgtatttccttaaaatctcca 174
|||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||
Sbjct 134 CTTCTTTACCACTCTCCACAACACCACTCTCTCTTTCTCTGTGTCTCCTTCAAATCTTCA 193
Query 175 tctctctctccaactctcttct-cACCAGAAGCTGAGTATGGATCTCCTCACACCTCTCA 233
|||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 194 TCTCTCTCTCCATCTCTCTTCTCCACAAGAAGCTGAGTATGGATCTCCTCACACCACTCA 253
Query 234 TCTTCCTCATCCTTCTCTTCttttttttttttCT-TACAGAAGCTGGTTCCATCGGAGTA 292
|||||||| |||| ||| ||| |||| || | |||| ||||||||||||||||||
Sbjct 254 TCTTCCTCCTCCTCCTCCTCTCACCATTTTCACTCT-CAGATGCTGGTTCCATCGGAGTA 312
Query 293 AACTACGGTCGTATCTCAGACGAACTACCATCAGCATTCAAAGTAGTCCAACTCCTAAAA 352
|||||||| || ||||| |||||||| || || |||||||||||||||||||| ||||||
Sbjct 313 AACTACGGCCGAATCTCCGACGAACTCCCCTCCGCATTCAAAGTAGTCCAACTACTAAAA 372
Query 353 TCTCAAGGAATCAAC-CGAGTCAAAATCTTCGACGCAGACCCATCAGTTCTCAAAGCTTT 411
|| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 373 TCCCAAGGAATC-ACGCGAGTCAAAATCTTCGACGCAGACCCATCAGTTCTCAAAGCATT 431
Query 412 ATCTGGATCTGGAATCAAAGTCACCGTAGATCTCCCCAACGAGTTACTCTTCTCCGCCGC 471
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 ATCCGGATCTGGAATCAAAGTCACCGTAGATCTCCCCAACGAGTTACTCTTCTCCGCCGC 491
Query 472 CAAAAGAACTTCCTTCGCCGTCTCATGGGTCAAACGTAATGTAGCTGCTTATCATCCTTC 531
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 492 CAAAAGAACTTCCTTCGCCGTCTCATGGGTCAAACGCAACGTAGCAGCTTATCATCCTTC 551
Query 532 AACACAGATCGAATCAATCGCTGTTGGTAACGAAGTCTTTGTTGATACACACAACACTAC 591
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 552 AACACAGATCGAATCAATAGCTGTTGGTAACGAAGTCTTCGTTGATACACACAACACTAC 611
Query 592 AAGCTTCTTGATCCCTGCAATGAGAAACATTCACAAAGCTCTTATGAGTTTCAATCTCCA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 AAGCTTCTTGATCCCTGCAATGAGAAACATTCACAAAGCTCTTATGAGTTTCAATCTCCA 671
Query 652 CTCTGACATCAAAATCTCTTCTCCTCTTGCTTTAAGCGCTCTTCAAAACTCTTACCCTTC 711
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 CTCCGACATTAAAATCTCTTCTCCTCTTGCTTTAAGCGCTCTTCAAAACTCTTACCCTTC 731
Query 712 TTCCTCTGGATCTTTCCGACCAGAACTTGTTGACTCTGTTATCAAACCGATGCTTGACTT 771
|||||| || |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 732 TTCCTCCGGTTCTTTCCGACCAGAACTTATTGACTCTGTTATCAAACCAATGCTTGACTT 791
Query 772 CTTACGTGAAACTGGTTCAAGACTTATGATCAATGTGTATCCTTTCTTTGCTTACGAAGG 831
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 792 CTTACGTGAAACTGGTTCAAGACTTATGATCAATGTCTATCCTTTCTTTGCTTATGAAGG 851
Query 832 AAACTCTGACGTCATTCCTTTAGACTACGCTTTGCTTAGAGAGAATCCAGGAATGGTTGA 891
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 852 AAACTCTGACGTCATTCCTTTAGATTATGCTTTGCTTAGAGAGAATCCAGGAATGGTTGA 911
Query 892 TTCAGGCAATGGTTTAAGGTACTTTAATCTCTTTGACGCTCAAATCGACGCCGTTTTCGC 951
||| || |||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 912 TTCTGGTAATGGTTTGAGATACTTTAATCTCTTCGACGCTCAAATCGACGCCGTTTTCGC 971
Query 952 AGCAATGTCGGCTTTAAAATACGATGATATCGAAATCATTGTGACGGAAACTGGTTGGCC 1011
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 972 AGCAATGTCGGCTTTAAAGTACGATGATATCGAAATCATTGTCACGGAAACTGGTTGGCC 1031
Query 1012 GTCGAAAGGAGATGAGAATGAAGTCGGAGCTACTTTAGCAAACGCAGCTTCTTACAACGG 1071
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1032 GTCGAAAGGAGATGAGAATGAAGTCGGAGCTACTCTAGCTAACGCAGCTTCTTACAACGG 1091
Query 1072 AAACTTAATCCGTCGGATCTTGACACGTGGAGGTACACCGTTACGTCCTAAAGCAGATCT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AAACTTAATCCGTCGGATCTTGACACGTGGAGGTACACCGTTACGTCCTAAAGCAGATCT 1151
Query 1132 GACAGTGTATCTCTTT-GCTCTGTTCAACGAGAACAAGAAGTTAGGTCCAACGTCGGAGA 1190
|| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 AACGGTCTATCT-TTTCGCTCTGTTCAACGAGAACAAGAAGTTAGGTCCAACGTCGGAGA 1210
Query 1191 GAAACTATGGTCTCTTCTTCCCTGATGAGAAGAAAGTCTACGACATTCCTTTCACAACAG 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 GAAACTATGGTCTCTTCTTCCCTGATGAGAAGAAAGTCTACGACATTCCTTTCACAACAG 1270
Query 1251 AAGGGCTT-AAACATTACCGTGACGGTGGTCATACTCCGGTCACCGGAGGAGATCAGACC 1309
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1271 -AGGGGTTGAAACATTACCGTGACGGTGGTCATACTCCGGTCACTGGAGGAGATCAGGTT 1329
Query 1310 ACCACGAAGCCTCCAATGAGCGGAGGTGTGTCGAAGAGTTTAAATGGTCATACTTGGTGT 1369
| || |||||||| ||||| ||||| |||||||||||||| |||||| |||||||||||
Sbjct 1330 A-CA--AAGCCTCCGATGAGTGGAGGCGTGTCGAAGAGTTTGAATGGTTATACTTGGTGT 1386
Query 1370 GTAGCTAATGGTGATGCTGGTGAAGAAAGGTTACAAGGTGGTTTAGATTATGCTTGTGGT 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GTAGCTAATGGTGATGCTGGTGAAGAAAGGTTACAAGGTGGTTTAGATTATGCTTGTGGT 1446
Query 1430 GAAGGTGGTGCTGATTG-CAGTTCGATTCAACCTGGTGCTAACTGTTACAGTCCTGATAC 1488
||||||||||||||||| | || | ||||||||||||||||||||||| |||||||||||
Sbjct 1447 GAAGGTGGTGCTGATTGTC-GTCCTATTCAACCTGGTGCTAACTGTTATAGTCCTGATAC 1505
Query 1489 ACTTGAGGCTCACGCTTCGTTTGCTTTCAATAGTTATTATCAGAAGAAGGGTCGTGCCGG 1548
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1506 ACTTGAGGCTCACGCTTCGTTTGCTTTCAATAGTTATTACCAGAAGAAGGGTCGTGCCGG 1565
Query 1549 TGGGAGTTGTTACTTCGGCGGCGCCGCTTACGTCGTTAGCCAACCACCGAAGTATGGAAG 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 TGGGAGTTGTTACTTCGGCGGCGCCGCTTACGTCGTTAGCCAACCACCGAAGTATGGAAG 1625
Query 1609 ATGCGAGTTTCCGACAGGATATTAAGGAAGAAGAAGATTTGAGTTTAGATTAATTTCTGC 1668
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1626 ATGCGAGTTTCCGACAGGATATTAAGGAAGAAGAAGATTTAAGTTTAGATTAATTTCTGC 1685
Query 1669 TATATAATATATTCGTATTTTGATGttttttttttGTT---AATTTTT-GT-AAGTTCTG 1723
|||||||||||||||| ||||||||| |||| |||| | || |||| || || || ||
Sbjct 1686 TATATAATATATTCGTTTTTTGATGTATTTTGTTTGGTGGGAAGTTTTAGTTAATTTTTG 1745
Query 1724 -A-CA----CTTT--AATGTTATGTTGTTAATATCAACTGAGACGATGTTCTTGATATTT 1775
| || |||| |||||| ||||||||||| ||||| |||||||||| |||||||||
Sbjct 1746 TAACAATGACTTTTTAATGTTGTGTTGTTAATACCAACTTAGACGATGTTATTGATATTT 1805
Query 1776 AATATTTAGGTAATGAAATTA 1796
||||||||||||||||||||
Sbjct 1806 GATATTTAGGTAATGAAATTA 1826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88854964650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5