BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480216
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06050.2 | Symbols: OPR3 | oxophytodienoate-reductase 3 | ch... 1980 0.0
> AT2G06050.2 | Symbols: OPR3 | oxophytodienoate-reductase 3 |
chr2:2359115-2362180 REVERSE LENGTH=1510
Length=1510
Score = 1980 bits (1072), Expect = 0.0
Identities = 1242/1327 (94%), Gaps = 0/1327 (0%)
Strand=Plus/Plus
Query 140 TCTTCTTCTCCCAGATCGGTGGAGACATGACGGCGGGACAAAAGAACTCTAACGAGACTC 199
||| ||||| ||||||||| |||||||||||||||| |||| |||||||||||||||||
Sbjct 184 TCTCCTTCTTCCAGATCGGCGGAGACATGACGGCGGCACAAGGGAACTCTAACGAGACTC 243
Query 200 TGTTTTCTTCTTACAAGATGGGAAGATTCGATCTCTCTCATCGAGTGGTTCTGGCGCCGA 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TGTTTTCTTCTTACAAGATGGGAAGATTCGATCTCTCTCATCGAGTGGTTCTGGCGCCGA 303
Query 260 TGACGCGGTGCAGGGCGTTGAACGGAGTTCCAAACGCGGCGTTGGCGGAGTATTACGCTC 319
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 304 TGACGCGGTGCAGGGCGTTGAACGGAGTACCAAACGCGGCGTTGGCAGAGTATTATGCTC 363
Query 320 AACGCACCACTCCCGGCGGCTTTCTCATCTCCGAAGGCACCATGGTCTCTCCAGGATCCG 379
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 364 AACGGACCACTCCCGGCGGTTTTCTCATCTCCGAAGGCACCATGGTCTCTCCCGGATCCG 423
Query 380 CAGGGTTCCCACATGTGCCTGGAATCTATTCGGATGAACAAGTAGAGGCATGGAAGCAAG 439
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 424 CAGGGTTCCCACATGTGCCTGGAATCTATTCAGATGAACAAGTAGAAGCATGGAAGCAAG 483
Query 440 TTGTGGATGCAGTTCACGCTAAGGGAGGTTTCATCTTTTGTCAGTTATGGCATGTTGGAC 499
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 484 TTGTGGAAGCAGTTCACGCTAAGGGAGGTTTCATCTTTTGTCAATTATGGCATGTTGGAC 543
Query 500 GTGCTTCTCATCCAGTGTATCAACCTAATGGAGGGTCGCCGATATCTTCAACGAACATAC 559
||||||||||| |||||||||||||||||||||| || || ||||| |||||||||| ||
Sbjct 544 GTGCTTCTCATGCAGTGTATCAACCTAATGGAGGATCACCAATATCGTCAACGAACAAAC 603
Query 560 CCATCTCAGAAAAAAGGTGGCGAGTTTTGTTGCCTGATGGATCCTACGCGAAGTACCCGA 619
| ||||| ||||| |||||||||||||||||||| ||||| ||| ||| |||||||||||
Sbjct 604 CAATCTCGGAAAACAGGTGGCGAGTTTTGTTGCCCGATGGTTCCCACGTGAAGTACCCGA 663
Query 620 AACCCCGGGCTTTAGAAGCTTCCGAGATACCTCGAGTGGTGGAAGATTATTGCCGCTCTG 679
|||| ||||||||||||||||||||||||||||| |||||||| |||||||||| ||||
Sbjct 664 AACCTCGGGCTTTAGAAGCTTCCGAGATACCTCGGGTGGTGGAGGATTATTGCCTTTCTG 723
Query 680 CTTTGAATGCTATCCGAGCTGGTTTCGATGGGATTGAGATCCATGGGGCGCACGGTTACC 739
|||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 724 CTTTGAATGCGATTCGAGCTGGTTTCGATGGGATTGAGATCCACGGGGCGCATGGTTACC 783
Query 740 TCATTGATCAGTTTTTGAAAGACGGGATCAATGACCGCACTGACCAATATGGAGGCTCCT 799
| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||
Sbjct 784 TTATTGATCAGTTTTTGAAAGATGGGATCAATGACCGTACTGACCAATACGGAGGATCCA 843
Query 800 TTGCAAACCGTTGTAGATTCTTGAAACAAGTAGTGGAAGGTGTAGTTTCAGCGATAGGAG 859
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 844 TTGCAAACCGTTGTAGATTCTTGAAACAAGTAGTGGAAGGTGTAGTTTCAGCCATAGGAG 903
Query 860 CTAGTAAAGTTGGTGTGAGGGTATCTCCAGCGATAGACCACTTGGACGCAACTGATTCTG 919
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 904 CTAGTAAAGTTGGTGTGAGGGTATCTCCGGCTATAGATCACTTGGACGCAACTGATTCTG 963
Query 920 ACCCATTATCCCTCGGGCTAGCCGTGGTTGATTTGCTCAATAAGTTACAAGATGTTAATG 979
||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 964 ACCCACTATCACTCGGGCTAGCCGTGGTTGGCATGCTCAATAAGTTACAAGGTGTTAATG 1023
Query 980 GCTCAAAGCTCGCTTACCTTCATGTAACGCAGCCTCGTTACCACGCCTACGGGCAAACAG 1039
|||||||||||||||||||||| || || || ||||| ||||||||||||||||||||||
Sbjct 1024 GCTCAAAGCTCGCTTACCTTCACGTTACACAACCTCGCTACCACGCCTACGGGCAAACAG 1083
Query 1040 AGTCTGGAAGGCAAGGGAGTGATGAGGAAGAAGCTAAGCTAATGAGGAGCTTGAGAATGG 1099
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1084 AGTCTGGAAGGCAAGGGAGTGATGAGGAAGAAGCTAAGCTAATGAAGAGCTTGAGGATGG 1143
Query 1100 CTTACAATGGAACCTTTATGTCCAGTGGAGGATTCAATAAGGAACTAGGCATGAAAGCTA 1159
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 1144 CTTATAATGGAACCTTTATGTCTAGTGGAGGATTCAATAAGGAACTAGGTATGCAAGCTG 1203
Query 1160 TTCAACAAGGTGATGCTGATTTGGTTTCATACGGCAGGCTTTTTATTGCAAACCCGGATT 1219
||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||
Sbjct 1204 TTCAACAAGGTGATGCTGATTTGGTTTCATATGGCAGACTGTTTATCGCAAACCCGGATT 1263
Query 1220 TGGTTTTGCGATTCAAGATTGATGCAAAGTTGAATAAATATAATAGGAAGACGTTTTACA 1279
|||||| ||| ||||||||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 1264 TGGTTTCGCGGTTCAAGATTGATGGAGAGTTGAATAAATATAATCGGAAGACGTTTTACA 1323
Query 1280 CTCAAGATCCTGTTGTTGGCTACACGGATTATCCTTTCTTGGCTCCTTTTTCCCGCCTCT 1339
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 CTCAAGATCCAGTTGTTGGCTACACGGATTATCCTTTCTTGGCTCCTTTTTCCCGCCTCT 1383
Query 1340 GAGTTTGATAATCGAGGAGAAGATATATTGACAATATATTGATATGTAAAATGACAATGG 1399
||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 1384 GAGTTTGATAATCGAGGAGAAAATGTATTGACAATACATTGATATGTAAAATGACAATGT 1443
Query 1400 TATTGTTATCCACTTAATAAATAGTCGTGTATCTTATTGTTTATCTACTTAAAATCTTCA 1459
||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1444 TATTGTTATCCACTTAATATTTAGTCATGTATCTTGTTGTTTATCTAGTTAAAATCTTCA 1503
Query 1460 TGGCATT 1466
|||||||
Sbjct 1504 TGGCATT 1510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72288784800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5