BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480224 Length=982 Score E Sequences producing significant alignments: (Bits) Value AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein | chr2:2588... 1471 0.0 > AT2G06530.1 | Symbols: VPS2.1 | SNF7 family protein | chr2:2588545-2590453 REVERSE LENGTH=1041 Length=1041 Score = 1471 bits (796), Expect = 0.0 Identities = 898/946 (95%), Gaps = 12/946 (1%) Strand=Plus/Plus Query 49 TTTTTCCAGTCCGATCAAAGGTTTTGCTAATTCGTCGGCTTAATTTCGTTCAAGCTTCTG 108 |||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 69 TTTTTCAACTCCGATCAAAGGTTTTGCTAATTCGTCGCCTTAATTTCGTTCAAGCTTCTA 128 Query 109 C-AAATTCCCAGATTTGGT-A-----TT--G-A-AGAATCATGATGAATTCAATCTTCGG 157 | ||| ||||||||||| | | || | | ||||||||||||||||||||||||| Sbjct 129 CAAAAGTCCCAGATTTGTTCACCTTTTTCGGTATTGAATCATGATGAATTCAATCTTCGG 188 Query 158 AAAGCGAAAAACTCCCGCAGAACTTCTGCGGGAAAACAAGCGGATGCTCGATAAGTCTAT 217 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 189 AAAGCGAAAAACTCCCGCAGAACTTCTGCGGGAGAACAAGCGGATGCTGGATAAGTCTAT 248 Query 218 CAGGGAGATAGAGAGGGAGAGACAAGGCCTTCAAACACAAGAAAAGAAACTCATTAACGA 277 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 249 CAGAGAGATAGAGAGGGAGAGACAAGGCCTACAAACACAAGAAAAGAAACTCATTAACGA 308 Query 278 GATTAAAAAGACCGCAAAGCAGGGCCAGATGGGAGCCGTTAAAGTGATGGCAAAGGATCT 337 ||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 309 GATTAAAAAGACCGCAAAGCAAGGCCAAATGGGAGCTGTTAAAGTGATGGCAAAGGATCT 368 Query 338 TATCAGAACGCGGCACCAGATTGAGAAGTTTTACAAGCTTAAATCCCAACTTCAAGGTGT 397 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 369 TATAAGAACGCGGCACCAGATTGAGAAGTTTTACAAGCTTAAATCTCAACTTCAAGGTGT 428 Query 398 ATCTCTCAGGATCCAGACTCTGAAATCTACACAAGCAATGGGTGAGGCGATGAAAGGTGT 457 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 429 ATCTCTCAGGATCCAGACTCTGAAATCTACACAAGCGATGGGTGAGGCGATGAAAGGTGT 488 Query 458 GACTAAAGCAATGGGGCAAATGAACAGGCAGATGAACCTTCCATCTCTGCAGAAAATCAT 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 GACTAAAGCAATGGGGCAAATGAACAGGCAGATGAACCTTCCATCTCTGCAGAAAATCAT 548 Query 518 GCAAGAATTTGAGAGGCAGAACGAGAAAATGGAGATGGTGTCTGAGGTGATGGGAGATGC 577 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 549 GCAAGAATTTGAGAGGCAGAACGAGAAAATGGAGATGGTGTCTGAGGTTATGGGAGATGC 608 Query 578 TATTGATGATGCTTTGGAAGGAGATGAGGAAGAAGAAGAGACTGAAGATCTTGTTAGCCA 637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 TATTGATGATGCTTTGGAAGGAGATGAGGAAGAAGAAGAGACTGAAGATCTTGTTAGCCA 668 Query 638 AGTCCTTGACGAGATTGGTATCGACATCAACCAAGAGCTGGTGAATGCTCCATCTGGTGC 697 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 AGTCCTTGACGAGATCGGTATCGACATCAACCAAGAGCTGGTGAATGCTCCATCTGGTGC 728 Query 698 GGTGGCAGTACCAGCCGCAAAGAACAAGGTGGTGCAAGCTGAAGCGACCGGAGCTGAGGA 757 ||| |||||||| || ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 729 GGTCGCAGTACCCGCAGCAAAGAACAAGGTGGTACAAGCTGAGGCGACCGGAGCTGAGGA 788 Query 758 TAGCGGAGGTATAGATAGTGACCTTCAAGCAAGGTTGGACAACCTTCGAAAAATGTGAAG 817 || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 789 CAGTGGAGGTATAGATAGTGACCTTCAAGCAAGGTTGGATAACCTTAGAAAAATGTGAAG 848 Query 818 CCTTTCCGGTTTCTGTATCATATTATTACTGAGGCTGATCACTTTTCAACTTCAAAGGCA 877 ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 849 CCTTTCCTGTTTCTGTATCATAATATTACTGAGGCTGATCACTTTTCAATTTCAAAGGCA 908 Query 878 AATGTTGCAAACGATATGTTAACGTTTTGGGGGTGGGTTTGTAATAATTTCATAATTTGA 937 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 909 AATGTTGCAAACGATGTGTTAACGTTTTGGGGGTGGGTTTGTAATAAATTCATAATTTGA 968 Query 938 GCCCTAAATTATAAACC-GATTATTGTTCAAACACCTTGTATATAA 982 |||||| |||||||| | ||||||||||||||||| |||||||||| Sbjct 969 GCCCTATATTATAAAACTGATTATTGTTCAAACACTTTGTATATAA 1014 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48074078679 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5