BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480276
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
AT2G10940.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 1118 0.0
> AT2G10940.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr2:4310412-4312103
REVERSE LENGTH=1338
Length=1338
Score = 1118 bits (605), Expect = 0.0
Identities = 818/914 (89%), Gaps = 42/914 (5%)
Strand=Plus/Plus
Query 1 ATGGACTCCTCTAAACTCTCATCTCTCTCT-TTCTGCCTCTTCCTCATCTGCATTATCTA 59
||||||||||| |||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 69 ATGGACTCCTCCAAACTCTCATCTCTCTCTCTT-TGCCTCTTCCTCATTTGCATTATCTA 127
Query 60 TTTTCCCCAACATTCCCTCTCATGCGGTTCATGTAACCCCA-GGAAGGGTGGAAAGCCCT 118
| | ||||||||||| ||| ||||||| || || || |||| ||||||| ||||||| ||
Sbjct 128 TCTCCCCCAACATTCTCTCGCATGCGGCTCTTGCAA-CCCACGGAAGGGCGGAAAGCACT 186
Query 119 CCCCTAAACCCCCGGTACACATTCCCAAACTACCAGTTCCTCCGGTGACCGTCCCTAAGC 178
|||||||| | | | || || |||||||||||||||||||||||||||||||
Sbjct 187 CCCCTAAA------G--C-C---CCTAAGCTACCAGTTCCTCCGGTGACCGTCCCTAAGC 234
Query 179 TACCGGTTCCTCCAGTGACTGTCCCTAAGCTACCCGTTCCTCCAGTGACTGTACCC-AAG 237
|||| |||||||| ||||| |||||||||||||| || ||||| ||||| || ||| |||
Sbjct 235 TACCAGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTCCCTCCGGTGACCGT-CCCTAAG 293
Query 238 CTACCGGTTCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCAGTGACTGTACCTAAG 297
||||| |||||||| |||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 294 CTACCCGTTCCTCCTGTGACCATCCCTAAGCTACCCGTTCCACCAGTGACTGTACCTAAG 353
Query 298 CTACCGGTTCCTCCGGTGACCGTACCTAAGCTACCAGTTCCTCCAGTGACCGTTCCCAAG 357
||||| |||||||| |||||||| || |||||||| ||||||||||||||||| ||||||
Sbjct 354 CTACCCGTTCCTCCTGTGACCGTCCCCAAGCTACCCGTTCCTCCAGTGACCGTCCCCAAG 413
Query 358 CTACCCGTTCCTCCGGTCACCGTCCCAAAGCTACCCGTTCCCCCGGTAACTGTCCCTAAG 417
|||||||||||||| || || ||||| |||||||||||||||||||||||||| ||||||
Sbjct 414 CTACCCGTTCCTCCAGTGACAGTCCCTAAGCTACCCGTTCCCCCGGTAACTGTACCTAAG 473
Query 418 CTACCCGTTCCTCCGGTGACCGTCCCTAAGCTACC----------A-----G---TACC- 458
|||||||||||||| |||||||||||||||||||| | | ||||
Sbjct 474 CTACCCGTTCCTCCAGTGACCGTCCCTAAGCTACCCCTTCCTCCGATTTCAGGGCTACCC 533
Query 459 -T-CC---AGTGGTAGGTCCCAACCTGCCATTGCCACCTTTGCCAATTGTGGGTCCTATT 513
| || ||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 534 ATACCTCCAGTGGTAGGTCCCAATCTGCCATTGCCGCCTTTGCCAATTGTAGGTCCTATT 593
Query 514 CTACCACCGGGAACAAACCCACCTGCCACAGGAGGGAAGGATTGTCCTCCACCGCCAGGG 573
|| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 594 CTTCCACCGGGAACAACCCCACCAGCCACAGGAGGGAAGGACTGTCCTCCACCGCCAGGG 653
Query 574 AGCGGGAAGCCACCATCAGGGAGCGGGAAGGCGACATGTCCCATAGACACGCTGAAGTTG 633
|||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 654 AGCGTAAAGCCACCATCAGGGGGCGGGAAGGCGACATGTCCAATAGACACGCTGAAGTTA 713
Query 634 GGTGCGTGCGTTGACTTGTTGGGTGGTCTAGTAAAGATAGGGCTTGGGGATCCAGCAGTT 693
||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 714 GGTGCTTGCGTCGACTTGTTGGGAGGTTTAGTAAAGATAGGGCTTGGGGATCCAGCAGTT 773
Query 694 AACAAATGTTGTCCGTTACTTAAAGGCCTCGTTGAAGTCGAAGCCGCGGCTTGTCTTTGC 753
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 774 AACAAATGTTGTCCGTTACTTAAAGGCCTCGTTGAAGTCGAAGCCGCGGCTTGTCTCTGC 833
Query 754 ACTACCCTCAAGCTCAAAGCTCTTGACCTCAATCTTTACGTCCCTGTTGCTCTTCAGCTT 813
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 834 ACTACCCTCAAGCTCAAAGCTCTTGACCTCAATCTTTATGTCCCTGTTGCTCTTCAGCTT 893
Query 814 CTCCTTACCTGTGGCAAAAATCCACCTCCGGGCTACACTTGTTCCATATGATAAACTCAC 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CTCCTTACCTGTGGCAAAAATCCACCTCCGGGCTACACTTGTTCCATATGATAAACTCAC 953
Query 874 TCCACTTATAAAGG 887
||||||||||||||
Sbjct 954 TCCACTTATAAAGG 967
Score = 357 bits (193), Expect = 2e-97
Identities = 262/296 (89%), Gaps = 2/296 (1%)
Strand=Plus/Plus
Query 171 CCCTAAGCTACCGGTTCCTCCAGTGACTGTCCCTAAGCTACCCGTTCCTCCAGTGACTGT 230
|||||||||||| |||||||| ||||| |||||||||||||| |||||||| ||||| ||
Sbjct 197 CCCTAAGCTACCAGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTTCCTCCGGTGACCGT 256
Query 231 ACCC-AAGCTACCGGTTCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCAGTGACTG 289
||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 257 -CCCTAAGCTACCAGTCCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCTGTGACCA 315
Query 290 TACCTAAGCTACCGGTTCCTCCGGTGACCGTACCTAAGCTACCAGTTCCTCCAGTGACCG 349
| ||||||||||| ||||| || ||||| |||||||||||||| |||||||| |||||||
Sbjct 316 TCCCTAAGCTACCCGTTCCACCAGTGACTGTACCTAAGCTACCCGTTCCTCCTGTGACCG 375
Query 350 TTCCCAAGCTACCCGTTCCTCCGGTCACCGTCCCAAAGCTACCCGTTCCCCCGGTAACTG 409
| |||||||||||||||||||| || |||||||| |||||||||||||| || || || |
Sbjct 376 TCCCCAAGCTACCCGTTCCTCCAGTGACCGTCCCCAAGCTACCCGTTCCTCCAGTGACAG 435
Query 410 TCCCTAAGCTACCCGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTACCTCCAGTG 465
||||||||||||||||||| ||||| || || ||||||||||| || |||||||||
Sbjct 436 TCCCTAAGCTACCCGTTCCCCCGGTAACTGTACCTAAGCTACCCGTTCCTCCAGTG 491
Score = 300 bits (162), Expect = 3e-80
Identities = 223/253 (88%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 201 CCCTAAGCTACCCGTTCCTCCAGTGACTGTACCC-AAGCTACCGGTTCCTCCGGTGACCG 259
|||||||||||| |||||||| ||||| || ||| |||||||| ||||||||||||||||
Sbjct 197 CCCTAAGCTACCAGTTCCTCCGGTGACCGT-CCCTAAGCTACCAGTTCCTCCGGTGACCG 255
Query 260 TCCCTAAGCTACCCGTTCCTCCAGTGACTGTACCTAAGCTACCGGTTCCTCCGGTGACCG 319
||||||||||||| || ||||| ||||| || ||||||||||| |||||||| ||||||
Sbjct 256 TCCCTAAGCTACCAGTCCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCTGTGACCA 315
Query 320 TACCTAAGCTACCAGTTCCTCCAGTGACCGTTCCCAAGCTACCCGTTCCTCCGGTCACCG 379
| ||||||||||| ||||| |||||||| || || ||||||||||||||||| || ||||
Sbjct 316 TCCCTAAGCTACCCGTTCCACCAGTGACTGTACCTAAGCTACCCGTTCCTCCTGTGACCG 375
Query 380 TCCCAAAGCTACCCGTTCCCCCGGTAACTGTCCCTAAGCTACCCGTTCCTCCGGTGACCG 439
|||| |||||||||||||| || || || ||||| ||||||||||||||||| ||||| |
Sbjct 376 TCCCCAAGCTACCCGTTCCTCCAGTGACCGTCCCCAAGCTACCCGTTCCTCCAGTGACAG 435
Query 440 TCCCTAAGCTACC 452
|||||||||||||
Sbjct 436 TCCCTAAGCTACC 448
Score = 285 bits (154), Expect = 8e-76
Identities = 182/194 (94%), Gaps = 7/194 (4%)
Strand=Plus/Plus
Query 1199 GATACTTTGGAGACAAAAAAGTGAGAAGAGAATGGCAGAGCTCCAATCTTTCCTG---T- 1254
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 967 GATGCTTTGGAG--AAAAAAGTGAGAAGAGAATGGCAGAGCTCCAATCTTTCCTGTCTTG 1024
Query 1255 GTTTACC-AATATATCATATCAAATCCTATCCCGTTGATTCTTTCCTCTATCGTTCCCTT 1313
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1025 GTTTACCAAATATATCATATCAAATCCTATCCCTTTGATTCTTTCCTCTATCGTTCCCTT 1084
Query 1314 CTGCTTGTATTATTAATTAATGTGTGATTTTTAGATTAATGATTCTTCTCTTGTATTAAA 1373
||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1085 ATGCTTGTATCATTAATTAATGTGTGCTTTTTAGATTAATGATTCTTCTCTTGTATTAAA 1144
Query 1374 GTATGATTTGAAAT 1387
||||||||||||||
Sbjct 1145 GTATGATTTGAAAT 1158
Score = 272 bits (147), Expect = 6e-72
Identities = 207/236 (88%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 232 CCC-AAGCTACCGGTTCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCAGTGACTGT 290
||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 197 CCCTAAGCTACCAGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTTCCTCCGGTGACCGT 256
Query 291 ACCTAAGCTACCGGTTCCTCCGGTGACCGTACCTAAGCTACCAGTTCCTCCAGTGACCGT 350
||||||||||| || |||||||||||||| ||||||||||| |||||||| |||||| |
Sbjct 257 CCCTAAGCTACCAGTCCCTCCGGTGACCGTCCCTAAGCTACCCGTTCCTCCTGTGACCAT 316
Query 351 TCCC-AAGCTACCCGTTCCTCCGGTCACCGTCCCAAAGCTACCCGTTCCCCCGGTAACTG 409
||| |||||||||||||| || || || || || |||||||||||||| || || || |
Sbjct 317 -CCCTAAGCTACCCGTTCCACCAGTGACTGTACCTAAGCTACCCGTTCCTCCTGTGACCG 375
Query 410 TCCCTAAGCTACCCGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTACCTCCAGTG 465
|||| ||||||||||||||||| ||||||||||| |||||||| || |||||||||
Sbjct 376 TCCCCAAGCTACCCGTTCCTCCAGTGACCGTCCCCAAGCTACCCGTTCCTCCAGTG 431
Score = 113 bits (61), Expect = 4e-24
Identities = 77/85 (91%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 381 CCCAAAGCTACCCGTTCCCCCGGTAACTGTCCCTAAGCTACCCGTTCCTCCGGTGACCGT 440
||| |||||||| ||||| ||||| || |||||||||||||| |||||||||||||||||
Sbjct 197 CCCTAAGCTACCAGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTTCCTCCGGTGACCGT 256
Query 441 CCCTAAGCTACCAGTACCTCCAGTG 465
||||||||||||||| ||||| |||
Sbjct 257 CCCTAAGCTACCAGTCCCTCCGGTG 281
Score = 86.1 bits (46), Expect = 8e-16
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 411 CCCTAAGCTACCCGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTACCTCCAGTG 465
|||||||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 197 CCCTAAGCTACCAGTTCCTCCGGTGACCGTCCCTAAGCTACCAGTTCCTCCGGTG 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68322941745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5