BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480375 Length=816 Score E Sequences producing significant alignments: (Bits) Value AT2G14890.1 | Symbols: AGP9 | arabinogalactan protein 9 | chr2:... 1195 0.0 > AT2G14890.1 | Symbols: AGP9 | arabinogalactan protein 9 | chr2:6399621-6401059 FORWARD LENGTH=938 Length=938 Score = 1195 bits (647), Expect = 0.0 Identities = 780/840 (93%), Gaps = 26/840 (3%) Strand=Plus/Plus Query 1 ACATTTCCTCACTCAACTCTCTCATTCTCACTAACAGAGAG--aaa--aaaagcaaaaaT 56 ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1 ACATTTCCTCACTCAACTCTCTCATTCTCACTAACAGAGAGAAAAAGCAAAAGCAAAAAT 60 Query 57 GGCTCGATCTTTCGCTATCGCTGTGATCTGTATCGTTCTCGTCGCCGGCGTTACTGGTCA 116 |||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| Sbjct 61 GGCTCGATCTTTCGCTATTGCTGTGATCTGTATCGTCCTCATCGCCGGCGTTACTGGTCA 120 Query 117 AGCTCCGACTTCACCACCAACCGCTACACCAGCTCCACCAACTCCAACAActcctccacc 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGCTCCGACTTCACCACCAACCGCTACACCAGCTCCACCAACTCCAACAACTCCTCCACC 180 Query 177 agcagctactcctcctccagtctcagcaccacctccagtcacaacctctcctcctccggt 236 |||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||| || Sbjct 181 AGCAGCAACTCCTCCTCCTGTCTCAGCACCACCACCAGTCACAACATCTCCTCCTCCAGT 240 Query 237 caccac--c-gctcctccAGCAAACCCACCGCCACCAGcctcatctcctcctcctgcttc 293 |||||| | ||||||||||||| ||||| ||||||| ||| ||||||||||||||||| Sbjct 241 CACCACTGCTCCTCCTCCAGCAAATCCACCACCACCAGTCTCTTCTCCTCCTCCTGCTTC 300 Query 294 tcctccaccagctactcctcctccagtcgcttctcctcctcctcccg-t-c-gct--t-- 346 ||||||||||||||||||||||||||||||||||||||||||||||| | | || | Sbjct 301 TCCTCCACCAGCTACTCCTCCTCCAGTCGCTTCTCCTCCTCCTCCCGTTGCTTCTCCTCC 360 Query 347 --------ctcctcctcccgtcgcaactcctccaccagctcctcTAGCTTCACCTCCAGC 398 |||||||||||||||| |||||||| ||||||||||||||||| ||||| || Sbjct 361 ACCAGCAACTCCTCCTCCCGTCGCTACTCCTCCCCCAGCTCCTCTAGCTTCCCCTCCTGC 420 Query 399 TCAAGTTCCGGCTCCAGCACCGACCAAGAAGCCAGATTCTCCATCTCCATCGCCGTCTTC 458 ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| || Sbjct 421 TCAAGTTCCAGCTCCAGCACCGACCACGAAGCCAGATTCTCCATCTCCATCTCCGTCATC 480 Query 459 TAGCCCACCTATTCCATCGAGCGACGCTCCTGGACCTAGCACCGATTCTATCTCTCCTGC 518 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TAGCCCACCTCTTCCATCAAGCGACGCTCCTGGACCTAGCACCGATTCTATCTCTCCTGC 540 Query 519 TCCTAGCCCCACCGGTGTGAACGACCAGAATGGAGCTAGCAAGATGGTTTCGAGCTTAGT 578 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TCCTAGCCCCACTGATGTGAACGACCAGAATGGAGCTAGCAAGATGGTTTCGAGCTTAGT 600 Query 579 ACTTGGATCTGTTCTCGGT-TGGTTTATGATCTAAGTGTCGTCTTTTGT-ACCGGTGTTA 636 | |||||||||||||| || |||||||||||||||||| |||||||| | | |||||| Sbjct 601 ATTTGGATCTGTTCTC-GTCTGGTTTATGATCTAAGTGGAATCTTTTGTGA-CTGTGTTA 658 Query 637 CTTGCATTTATTATTATGTCGTCTTTGTTTGTTCCACTGTATTGCTTGGGACTGAATTCT 696 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 CTTGCATTTATTTTTATGTCGTCTTTGTTTGTTCCACTGTATTGCTTGGGACTGAATTCT 718 Query 697 TTTGGGATTTATTATCTTTCGGAGAGGATACTATTGAGAGCTTGAGATGGAGATAGCAGG 756 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TTTGGGATTTATTATCTTTCGGAGAGGATACTATTGAGAGCTTGAGATGGAGATAGCAGG 778 Query 757 ATATTTTGTTTGCAGATACTTTTGTGGCTTCCTTTCTCATTCCATTTGATTATTAGTGTA 816 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 779 ATATTTTGATTGCAGATACTTTTGTGGCTTCATTTCTCATTCCATTTGATTATTAGTGTA 838 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39735210277 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5