BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg480385 Length=1628 Score E Sequences producing significant alignments: (Bits) Value AT2G15020.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2523 0.0 > AT2G15020.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64190.1); Has 72 Blast hits to 72 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:6491434-6493352 REVERSE LENGTH=1919 Length=1919 Score = 2523 bits (1366), Expect = 0.0 Identities = 1546/1634 (95%), Gaps = 7/1634 (0%) Strand=Plus/Plus Query 1 AAACACACATTTTCCTT--aaaaa-aaa-TAA-ACCAAGAAAATGGACCCTTGGTCATGG 55 ||||||||||||||||| ||||| ||| || |||||||||||||||| ||||||||| Sbjct 25 AAACACACATTTTCCTTAGAAAAATAAACCAAGTCCAAGAAAATGGACCCATGGTCATGG 84 Query 56 ATATGCGACCTTCCCGAAGCTCCCGAGTTCAGCGAGTCTGATTCACACGCAGTGTTTCAG 115 ||||| || ||||| |||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 85 ATATGTGAGCTTCCAGAAGATCCTGAGTTCAGCGAGTCTGATTCACACGCAGTGTTTCAG 144 Query 116 CTCGCAGGCGATTTGACACGTTCGATCAAACTTAGAGCCGAAAGGGCTTCGGGTTCTGAC 175 ||||| |||||||||||||||||||||||||||||||||||| || ||| |||||||||| Sbjct 145 CTCGCTGGCGATTTGACACGTTCGATCAAACTTAGAGCCGAACGGACTTTGGGTTCTGAC 204 Query 176 CTAGAATCTCAGTCTCTCACCTTCAAAGTGGTAGCAGAGGGTTTTAACCTCCTTAAGTCG 235 | ||||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||| Sbjct 205 CAAGAATCTCACTCTCTCACCTTTACAGTTGTAGCAGAGGGTTTTAACCTCCTTAAGTCG 264 Query 236 TCGACCATTTGGGTCTCGGACACATGTCCCTTGTCGTCGGAGAAACCGTTCCTCCCTCTT 295 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 265 TCGACCATTTGGGTCTCCAACACATGTCCCTTGTCGTCGGAGAAACCGTTCCTCCCTCTT 324 Query 296 GTTCTCCAGCTTCTTCAAGAACTAATCACCCATTCCCCTACCTCACGCGACGGCGCGTGC 355 ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| Sbjct 325 GTTCTCCAGCTTCTTCAAGAACTAATCACCCGTTCCCCTACCACACACGACGGCGCGTGC 384 Query 356 ACAAAGTTTGAACAACTTGAAATCAAACCAGGTCCGGTTAGCTGGGTCATGGACTCTCAC 415 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 385 ACAAAGTTTGAACAACTTGAAATCAAACCAAGTCCAGTTAGCTGGGTCATGGACTCTCAC 444 Query 416 TCACCTGAATCCTTCTCATCAGTCTTTAATCTAATCCTCCTCACGCGCCTCTTCTGGTTG 475 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 445 TCACCTGAATCCTTCTCATCAGTCTTTAATCTAATCCTCCTCACACGCCTCTTCTGGTTG 504 Query 476 TGTGTATTTGACGCGCCTAGCGAAGTAGGCTCTTTCTTCTTCCAACATC-TACTAGGTCC 534 ||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||| Sbjct 505 TGTGTGTTTGACGCGCCAAGCGAAGTAGGCTCTTTCTTCTTCCAACA-CTTACTAGGTCC 563 Query 535 ACACGTGAACGCGCTTACATGTCAACACGCACCTGTGTTACGAACGTTTCTCGTCTCACT 594 ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| || Sbjct 564 ACACGTGAACGCGCTTACATGTCAACATGCACCTGTCTTACGGACGTTTCTCGTCTCTCT 623 Query 595 TGGTGTAGACGCCGAGCTGTGTATTGTACGAGCCGCTTCTTACGCCTTATCCAAATGGAT 654 ||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||| Sbjct 624 CGGTGTAGACGCCGAGCTTTGTATTGTACGAGCTGCTTCGTATGCCTTATCCAAATGGAT 683 Query 655 GATCTCTAAAGAGATAGGACTTGGGAATCTCGGGTTGAAACAGTTAAGTAGCAGCCTCAT 714 |||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| Sbjct 684 GATCTCTAAAGAGATAGGACTTGGGAATCTTGGTTTGAAACAGTTCAGTAGCAGCCTCAT 743 Query 715 GCCTCGTCATTCATTGGGATTTTCGTATGCCACAGAAGCTCATGGGCTTTGGATCTTGAA 774 ||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 744 GCCACGTCATTCGTTGGGGTTTTCGTATGCCACAGAAGCTCATGGTCTTTGGATCTTGAA 803 Query 775 AGGCTATTTCCCAATCTTGTCAATGAACGTCACAAATAATAGCTCTAACGAGGTTCACAA 834 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 804 AGGTTATTTCCCAATCTTGTCAATGAACGTCACAAATAATAGCTCTAACGAGGTTCACAA 863 Query 835 CAAGATCATCAAGTTTCCATTCGTGGAGCCTAAAGAAGCTGTCCTACGTTACGCTTTGTC 894 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 864 CAAGATCGTCAAGTTTCCATTCGTAGAGCCTAAAGAAGCTGTCCTACGTTACGCTTTGTC 923 Query 895 GCATCAACAAGCGGAAATACTAGTACAGTTTGAATACTCCGTTAGGTTTTACGAGAACTA 954 |||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||| Sbjct 924 GCATCAACAAGCTGAAATACTAGTACAGTTTGAATACTCCGTTAAGTTCTATGAGAACTA 983 Query 955 CATAAAAGTGAACGCACGTGTAGATAACATACGCATCCACGTATCAAAGTTAGGGTTTCA 1014 ||||||||| |||||||||||||| ||||||||||||||||| || ||| |||||||||| Sbjct 984 CATAAAAGTAAACGCACGTGTAGACAACATACGCATCCACGTCTCGAAGCTAGGGTTTCA 1043 Query 1015 CAAAGGAGGAGTTGGCGTGGAGAATCAGATAGCGGATTGTTACTCGGAGGAGAGGTACTT 1074 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1044 CAAAGGAGGAGTTGGCGTGGAGAATCAGATAGCGGATTGTTACTCCGAGGAGAGGTACTT 1103 Query 1075 CCCGTCACGGGTACGGGTCTGGCTTGGGCCAGAAATCGGGTCGAGCCACGTATCGGGGCT 1134 ||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| Sbjct 1104 CCCATCACGGGTACGGGTCTGGCTCGGGCCAGAACTCGGGTCCAGCCACGTATCGGGGCT 1163 Query 1135 AAGCCTAGGAAGGTCAACGAAGAACGAAGAGAGAGATATTGAGGTGACTAGGGTGCTAAA 1194 ||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 1164 AAGTCTAGGAAGGTCAACGAAGAACGAGGAGAGAGATATCGAGGTGACTAGAGTGCTAAA 1223 Query 1195 GGGAAATTTCGGAAAAGGTAAAGTGGCTCCAAGAGTCAAGGCAAGAGCAAGAATGTCAAC 1254 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 1224 GGGAAATTTCGGAAAAGGTAAAGTGGCTCCGAGAGTCAAGGCAAGAGCAAGAATGGCAAC 1283 Query 1255 GAAGAGGAAGGTTAAAGATTGGAGAATCGAGCAGGAGAGTGAAGGAAACGCTGCTGTTTT 1314 |||||||||||||||||||||||||| |||||||| || |||||||||||||| ||||| Sbjct 1284 AAAGAGGAAGGTTAAAGATTGGAGAATAGAGCAGGAAAGCGAAGGAAACGCTGCCGTTTT 1343 Query 1315 CGATGCAGTGTTGTACGATAGAGAGAGCGGCCAAGAAGTGACAACGGTTATGCCGAAGCC 1374 ||||| ||||||||||||||||||||||| |||||||||||||| |||| ||||||||| Sbjct 1344 TGATGCGGTGTTGTACGATAGAGAGAGCGGTCAAGAAGTGACAACCGTTAAGCCGAAGCC 1403 Query 1375 AAACCAAGAGGGTTTAAAGAATGTGTTTACGAAGAGTGGAGGGATGGTGTTTGGAAGGGA 1434 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1404 AAACCAAGAGGGTTTAAAGAATGTGTTTACGAAGAGTGGGGGGATGGTGTTTGGAAGGGA 1463 Query 1435 TGAGTATGGAGATGAAGTTGGGTGGAGAGTTGGGAGAGAGATGGAAGGAAGTGTGTTGAA 1494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1464 TGAGTATGGAGATGAAGTTGGGTGGAGAGTTGGGAGAGAGATGGAAGGAAGTGTGTTGAA 1523 Query 1495 GTGGAGAATGGGTGGCAAAATTTGGCTAACTTATTGGCCAAACAAGTTGAACACTTTGTT 1554 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1524 GTGGAGACTGGGTGGCAAAATTTGGCTAACTTATTGGCCAAACAAGTTGAACACTTTGTT 1583 Query 1555 TTATGAGACTAGATGTGTAGAGTGGTGTGATGAGGTTGATTTGCCTTTGCTTCCCACTTG 1614 ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1584 TTATGAGACTAGATGTGTAGAGTGGTGTGATGAGGTTGATTTGCCGTTGCTTCCTACTTC 1643 Query 1615 TTAGAGTCGCAAAT 1628 |||||||||||||| Sbjct 1644 TTAGAGTCGCAAAT 1657 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80421273090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5