BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480395
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15290.1 | Symbols: ATTIC21, TIC21, CIA5, PIC1 | translocon ... 1607 0.0
> AT2G15290.1 | Symbols: ATTIC21, TIC21, CIA5, PIC1 | translocon
at inner membrane of chloroplasts 21 | chr2:6642300-6644037
REVERSE LENGTH=1129
Length=1129
Score = 1607 bits (870), Expect = 0.0
Identities = 999/1062 (94%), Gaps = 5/1062 (0%)
Strand=Plus/Plus
Query 1 AAAATATGCAGTCACTACTCTTACCGCCGGCGAGCTCCTCCGGCGTATCCGCGGTTGCGC 60
|||||||||| ||||||||||| ||||||||||| ||||||||||||||||| || ||||
Sbjct 22 AAAATATGCAATCACTACTCTTGCCGCCGGCGAGTTCCTCCGGCGTATCCGCCGTCGCGC 81
Query 61 TACGACCAGGTGTCCAGCACTCATTCAACCACCAAAGCCTCTCTACTCGCTCCCAGCCAT 120
|||| |||||| ||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 82 TACGGCCAGGTTTCCAGCACTCATTTAACCACCAAAGCCTCTCTACTCGCTCCCTGCCAT 141
Query 121 CGCTTAATCCACTTCTCTTCGCTCCGAAGAGGAAAGCCACCATCTCCTCATACCAATCGC 180
| |||||||||||||||| |||||||||| |||| |||||||||||||||| |||||||
Sbjct 142 TGTTTAATCCACTTCTCTTAGCTCCGAAGAAGAAAACCACCATCTCCTCATATCAATCGC 201
Query 181 CACCGTCTTTGTCCGTCTACGGTTTCCAAATCGGAGGATCTAAACCTAGTTTCGCACCAT 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 202 CACCGTCTCTGTCCGTCTACGGTTTCCAAATCGGAGGATCTAAACCTAGTTTCACACCAT 261
Query 241 CCACTGTGGCATTTTCCTCTTCGACGTCTCCTTCTTCCGTTTCCGGTGATAATGAGGTCG 300
|||| ||||||||||| | | |||| ||||| ||||||||| ||||||||||||||||||
Sbjct 262 CCACGGTGGCATTTTCATATCCGACTTCTCCGTCTTCCGTTCCCGGTGATAATGAGGTCG 321
Query 301 ACAAAGCAAAACTCGCTCAGGTTGCAAAGAGATTGGAGAAGACTTCTAGGTACTTTAAGA 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 322 ACAAAGCAAAACTCGCTCAGGTTGCAAAGAGATTGGAGAAGACTTCAAGGTACTTTAAGA 381
Query 361 GGCTGGGGAGTATTGGTTTTTGGGGGCAGCTTGTGTCAACTGTTGTGGCGGCGGTGATTC 420
| || |||||||||||||| ||||||||||||||||||||||| || || || |||||||
Sbjct 382 GACTAGGGAGTATTGGTTTCTGGGGGCAGCTTGTGTCAACTGTGGTTGCAGCTGTGATTC 441
Query 421 TATCCTTCTCAATTGTTGTAACTGGGAAACCTACTTCACCTGCTACTTTCTATGCTACTG 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TATCCTTCTCCATTGTTGTAACTGGGAAACCTACTTCACCTGCTACTTTCTATGCTACTG 501
Query 481 CAAGTGGGATTGCTGCTTCGTTTGTCTCGGTTTTCTGGTCGTTTGGGTATATTCGGCTCT 540
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 CTAGTGGGATTGCTGCTGCGTTTGTCTCGGTTTTCTGGTCGTTTGGGTATATTCGGCTCT 561
Query 541 CAGAGAGGCTCCGTCGAACTTCCATCGACCCTGCCAAGGTAACCCCTCCTCGTGCTGATG 600
| ||||||||||||||||||||||||||||||||||||| | || ||||| |||||||
Sbjct 562 CCGAGAGGCTCCGTCGAACTTCCATCGACCCTGCCAAGG---CGCCGCCTCGCGCTGATG 618
Query 601 TTGTGAAAGGTTTGAGGAGCGGGATTATGGTAAATATTTTGGGAATGGGGGCAGCACTTC 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 619 TTGTGAAAGGTTTGAGGAGCGGGATTATGGTAAATATTTTGGGAATGGGATCAGCACTAC 678
Query 661 TCGGGATGCAAGCAACGGTTGGATTTTTAGTTGCAAAGGCTTTAACAACTTCAGCAAACC 720
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TCGGGATGCAAGCAACAGTTGGATTTTTAGTTGCAAAGGCTTTAACAACTTCAGCAAACC 738
Query 721 CTTTCTACCAGGGAGTCTCTCAGGGATACAGCCCCGTTCTTGCTCTTGATGTCTTCCTAG 780
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 739 CTTTCTACCAAGGAGTCTCTCAGGGATACAGTCCCGTTCTTGCTCTTGATGTCTTCCTAG 798
Query 781 TTCAGGCATCGGCGAACACCTTACTCTCTCATTTCCTTGGCCTTGTTTGCTCATTGGAGC 840
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 799 TTCAGGCATCGGCGAACACCTTACTCTCTCATTTCCTTGGTCTTGTTTGCTCGTTGGAGC 858
Query 841 TGTTGCGGTCTGTGACAGTGCCCAATTCGGAATCTGTTGTAGTTCCTAAGGTTGCTTGAG 900
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 859 TGTTGCGGTCTGTGACAGTGCCCAATTCGGAATCTGTCGTAGTTCCTAAGGTTGCTTGAG 918
Query 901 TTTCTGCCTTTTTCGGCCTCACTTCATGTATTCATAAACGTTGAAAGCTGGGGCT-T-GT 958
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 919 TTTCTGCCTTTTTCAGCCTCACTTCATGTATTCATAAACGTTGAAAGCTGGGGCTGTTGT 978
Query 959 TTCCTTTTATAACCGAGAACCAACCATTGCGGACTCAATGGCTTTATTAGCAGCATTACT 1018
|||||||||||||||||||||||| |||||||| ||||||||||| |||||| ||||| |
Sbjct 979 TTCCTTTTATAACCGAGAACCAACGATTGCGGATTCAATGGCTTTGTTAGCAACATTATT 1038
Query 1019 GAACTACAAAACTAAAAATCACAATTCCACATAAGAGGATAA 1060
|||||||| |||| ||||||||||||| |||||||| |||||
Sbjct 1039 GAACTACATAACTCAAAATCACAATTCAACATAAGAAGATAA 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51907363530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5