BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480447
Length=1354
Score E
Sequences producing significant alignments: (Bits) Value
AT2G20230.1 | Symbols: | Tetraspanin family protein | chr2:872... 1940 0.0
AT2G20240.1 | Symbols: | Protein of unknown function (DUF3741)... 167 3e-40
> AT2G20230.1 | Symbols: | Tetraspanin family protein | chr2:8725541-8727742
FORWARD LENGTH=1388
Length=1388
Score = 1940 bits (1050), Expect = 0.0
Identities = 1247/1337 (93%), Gaps = 34/1337 (3%)
Strand=Plus/Plus
Query 37 TGAGATATTTTATAAGAAAACAAAAACAATAATTATCGAACAACGGCGACACCTTTAGA- 95
||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 67 TGAAATATTTTATAAGAAAACAAAAACAATAATTAACAAACAAAGGCGACACCTTTAGAT 126
Query 96 --GACAAGACGACCATCGTT-G--AAAGCTTCTCAGATTTTCTCCTTATCCCCAAAAATT 150
|||||||||||||| || | ||||||||||| ||| ||||||||||||||||||||
Sbjct 127 TCGACAAGACGACCAT-TTTAGAAAAAGCTTCTCAAATTCTCTCCTTATCCCCAAAAATT 185
Query 151 CAAGC-TTTTTCTCTTTTGGAAAAATTCTGA-GCAAAAATGCGGCGTAATTGCTGCCATG 208
||| | |||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 186 CAAACTTTTTTCTC-TTTGG-AAAATTCTGAGGCAAAAATGCGGCGTAATTGCTGCCATG 243
Query 209 TTTCGTTTGCTACAACTCTCAAGATCCTCAATTTTGTTCAAGCTTTCATCGGTGTTTCCA 268
|||| |||||| |||| ||||||||||| |||||||| ||||||||||| |||||||| |
Sbjct 244 TTTCATTTGCTTCAACCCTCAAGATCCTTAATTTTGTCCAAGCTTTCATTGGTGTTTCGA 303
Query 269 TCATTATCTACTCCATTTGGATGCTCCATGAATACAACCGTCACCTTCCCGTCGACCCGC 328
|||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 304 TCATTATCTACTCCATATGGATGCTCCATGAATACAGCCGTCACCTTCCCGTGGACCCGC 363
Query 329 CTCCGGCAGCTTCATCAAGCTCCGGAACCGAGATCGCTACTAGTGTATCTGAGCCCTTGA 388
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CTCCGTCAGCTTCATCAAGCTCCGGAACCGAGATCGCTACTAGTGTATCTGAGCCCTTGA 423
Query 389 AGAATCCTATTGATTTCATGGCGAGTATCGTTCTCGGGTCTAATGGTGGTGATCATGGGT 448
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 424 AGAATCCTATTGATTTTGTGGCGAGTATCATTCTCGGGTCTAATGGTGGTGATCATGGGT 483
Query 449 TTAATCTACGCTCTTTGGATCTTCCTGCTCCATGGTTCATCTACTCTTTCATGGCTGTTG 508
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 484 TTAACCTACGCTCGTTGGACCTTCCTGCTCCATGGTTCATCTACTCTTTCATGGCGGTTG 543
Query 509 GTATATTGGTCTGTATTGTTACCTTCATTGGTTTCATAGCAGCTGAAGCAATCAATGGCT 568
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GTATATTGGTCTGCATTGTTACCTTCATTGGTTTCATAGCAGCTGAAGCAATCAATGGCT 603
Query 569 GTTGCTTGTGTTTTTACTCTATTCTCAAAACTCTGCTCATTCTCCTCGAAGCTGCACTTG 628
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 604 GTTGCTTGTGTTTTTACTCTATTCTCAAAACTCTGCTCATTCTACTTGAAGCTGCACTTG 663
Query 629 TTGCATACATCGCTATTGACCGTCACTGGGAAAAGGATCTTCCGTATGATCCAACTGGAG 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTGCATACATCGCTATTGACCGTCACTGGGAAAAGGATCTTCCGTATGATCCAACTGGAG 723
Query 689 AACTCAGTAGTCTTAGGGCCTTCATTGAAGAAAACATCGATATATGCAAATGGGTCGGGA 748
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 724 AACTTAGTAGTCTTAGGGCTTTCATTGAAGAAAACATCGATATATGCAAATGGGTGGGGA 783
Query 749 TTGCTGTTGTAGCAGTCCAGCTACTGTCGTTGCTACTCGCCATGGTTCTCAGAGCTATGG 808
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 784 TTGCTGTGGTAGCAGTCCAGCTACTGTCATTGCTACTAGCCATGGTTCTCAGAGCGATGG 843
Query 809 TTTCAACCCCGAAACCCGAACTTGACGAAGAGGAAGACT-ATGAGAACCCGAGGAGTAGA 867
||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 844 TTTCAACCCCGAAACCCGAACTTGACGAAGAGGAAGA-TGATGAGAACCCAAGGAGTAGA 902
Query 868 ACTTGGGACCCACTTCTTGGTTCGCAAGGAAACCAAGCGCCTGCTGGGTCAAGCAAAATT 927
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||
Sbjct 903 ACTTGGGACCCACTTCTTGGTCCGCAAGGAAACCAAGCGCCTGCTGGCTCAAGCAAGATT 962
Query 928 GAAAACTGGAGCTCCCGAATCAGAGAAAGGTATGGTTTGAACCAGAGTCCACCGGTGAAC 987
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 963 GAAAACTGGAGCTCCCGAATCAGAGAAAAGTATGGTTTGAACCAGAGTCCACCGGTGAAC 1022
Query 988 CCGAAAGGTTGATGAAGCCAAATTAA-CATGTTTCTAAAACTGCATGTGTCCATATGGTC 1046
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1023 CCGAAAGGTTGATGAAGCCAAAT-AATCATGTTTCTAAAACTGCATGTGTCCATATGGTC 1081
Query 1047 TCTCTCTGAAGCTCTCTTTCTCTATGTTT-GCTCTTTGCGACTTCTCGAGTGTGCATAAC 1105
||| | |||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1082 TCTGT--GAAGCTCTCTTTCTCTATGTTTTGCTCTTTGCAACTTCTCGAGTGTGCATAA- 1138
Query 1106 ATTAAACATTTACTCAAAACGGTGCCGTCTTGTGTTTACACA-------TAAGCATCTTC 1158
| |||||||||||||| |||| || ||||||||||||| |||||||||||
Sbjct 1139 A-----CATTTACTCAAAACAGTGCTGTATTGTGTTTACACAAACGGCATAAGCATCTTC 1193
Query 1159 GTTTGTGTGTTTGCTTGTATAAACAATCCTGTGAACAGTTTGAAATTAGCATTTCCACTA 1218
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1194 GTTTGTGTGTTTGCTTGTACAAACAATCCTGTGAACAGTTTGAAGTTAGCATTTCCACTA 1253
Query 1219 GAAAGTTTCGATTCAATTTATAATGaaaaaaaGCAAAACTAAAATTTGAATTGGACATCA 1278
|| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||
Sbjct 1254 TAACGTTTCGATTCAATTTATAATGAAGAAAA-CAAAACTAAAAATTGAATTGGACATCA 1312
Query 1279 GAAACAGATTAAAGTAAA-TATATAATATAGGTTAAACTCTTTCTTAGATTATATCATCT 1337
||||||||||| ||||| | |||| | ||||||||||||||||||||||||||||||||
Sbjct 1313 TAAACAGATTAATGTAAAATGTATA-TGTAGGTTAAACTCTTTCTTAGATTATATCATCT 1371
Query 1338 ATATATGTTTCATTATT 1354
|||||||||||||||||
Sbjct 1372 ATATATGTTTCATTATT 1388
> AT2G20240.1 | Symbols: | Protein of unknown function (DUF3741)
| chr2:8727626-8730500 REVERSE LENGTH=2463
Length=2463
Score = 167 bits (90), Expect = 3e-40
Identities = 110/119 (92%), Gaps = 3/119 (3%)
Strand=Plus/Minus
Query 1237 TATAATGaaaaaaaGCAAAACTAAAATTTGAATTGGACATCAGAAACAGATTAAAGT-AA 1295
||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||| || ||
Sbjct 2463 TATAATGAAGAAAA-CAAAACTAAAAATTGAATTGGACATCATAAACAGATTAATGTAAA 2405
Query 1296 ATATATAATATAGGTTAAACTCTTTCTTAGATTATATCATCTATATATGTTTCATTATT 1354
|| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2404 ATGTAT-ATGTAGGTTAAACTCTTTCTTAGATTATATCATCTATATATGTTTCATTATT 2347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66666323760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5