BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg480475
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT2G22870.1 | Symbols: EMB2001 | P-loop containing nucleoside t... 1485 0.0
> AT2G22870.1 | Symbols: EMB2001 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein | chr2:9739457-9741104
FORWARD LENGTH=1105
Length=1105
Score = 1485 bits (804), Expect = 0.0
Identities = 878/914 (96%), Gaps = 3/914 (0%)
Strand=Plus/Plus
Query 1 aaaa-aaaaTGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCCCACTCCTTTAA 59
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 12 AAAACAAAATGGTGCTACTTCTCCGATATCGATCCTTAACGATAAATCTCACTCCTCTAA 71
Query 60 TACCAAAATCTCACAAATTCCACACCCTCCAATCATTTCGTAACCCTAATTTCATCTCCA 119
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 72 TACCCAAATCTCAAAAATTCCACACTCTCCAATCATTTCGTAACCCTAATTTCATCTCCA 131
Query 120 CCCCAAAAGTCTCAGCCTCTTCGAACAATCCAACACCAACAACGAATCGTTCGATCTCCG 179
||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||||
Sbjct 132 TCCCAAAAATCTCAGCCTCCACGAACAATCCAACAACAACAACGAATCGGTCGATCTCCG 191
Query 180 ACGCGGCCAAATTCGCTAAGTCAGTGTTATTCATACCTCCTGGTGTAGAGATTGAGGAAC 239
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 ACGCGACTAAATTCGCTAAGTCAGTGTTATTCATACCTCCTGGTGTAGAGATTGAGGAAC 251
Query 240 TAACAGATGATATGGTTCTTCCGGGCTCCAATATCGTAATCGGACCTTTTGCAGGTCATT 299
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 252 TAACAGATGATATGGTTCTTCCGGGTTCAAATATCGTAATCGGACCTTTTGCGGGTCATT 311
Query 300 CTCAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGAGCTAGAGATTG-CACTAAA 358
| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||
Sbjct 312 CACAAATCAAAGAAGTTGAATTTGTTAAAAGTAGTGCTCGTGCTAGAGATTGTC-CTAAA 370
Query 359 GATGATCGTCCTGAGATTGCTATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATC 418
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 371 GATGATCGTCCTGAGATTGCGATTTTGGGTCGTTCTAATGTTGGCAAGTCTTCGCTTATC 430
Query 419 AACTGTTTGGTTCGTAAGAAGGAAGTTGCTCTTACCTCTAAGAAACCTGGGAAGACTCAG 478
|| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 431 AATTGTTTGGTTCGTAAGAAAGAAGTTGCTCTTACTTCTAAGAAACCTGGGAAGACTCAG 490
Query 479 CTTATAAATCACTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CTTATAAATCACTTCTTGGTGAATAAGAGTTGGTACATTGTGGATTTGCCTGGTTATGGA 550
Query 539 TTTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TTTGCTAAAGTTTCAGATGCTGCGAAAACAGATTGGTCTGCGTTTACTAAAGGTTACTTC 610
Query 599 TTGAATAGAGACACTCTTGTATGTGTTCTACTTCTGATCGATGCAAGTGTTCCTCCTCAG 658
||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 611 TTGAATAGAGACAGTCTTGTTTGTGTTCTACTTCTCATCGATGCAAGTGTTCCTCCTCAG 670
Query 659 AAGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACAGATGACTTTTGTG 718
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 671 AAGATTGATCTTGATTGTGCTAATTGGCTTGGTCGCAACAATGTACCGATGACTTTCGTG 730
Query 719 TTTACGAAATGCGATAAAATGAAAGCAACGAAAGGGAAAAGACCTGATGAGAACATCAAA 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 731 TTTACGAAATGCGATAAAATGAAAGCAACGAAAGGGAAAAGACCTGATGAGAACATTAAA 790
Query 779 GCTTTCCAACAAATCATTAGAGAGAACTTCAAAGTACATCCTCCTTGGATTTTGACGAGT 838
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 791 GCTTTCCAACAAATCATTAGAGAGAATTTTAAAGTACATCCTCCTTGGATTTTGACGAGT 850
Query 839 AGTGTATCGGGTTTGGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTAAGAAACTAC 898
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 851 AGTGTATCTGGTTTAGGCAGAGACGAGCTTCTTCTTCACATGTCGCAGCTGAGAAACTAC 910
Query 899 TGGGATCAATAGGT 912
||||||||||||||
Sbjct 911 TGGGATCAATAGGT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5